Mutagenetix > Incidental Mutation

Incidental Mutation 'R7749:Caprin1'

597073

Institutional Source

Beutler Lab

Gene Symbol

Caprin1

Ensembl Gene

ENSMUSG00000027184

Gene Name

cell cycle associated protein 1

Synonyms

caprin-1, RNG105, Gpiap1, MMGPIP137

MMRRC Submission

045805-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.591) question?

Stock #

R7749 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

103593292-103627946 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 103602099 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 548 (S548P)

Ref Sequence

ENSEMBL: ENSMUSP00000028607 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028607] [ENSMUST00000111147] [ENSMUST00000145606]

AlphaFold

Q60865

Predicted Effect

probably benign
Transcript: ENSMUST00000028607
AA Change: S548P

PolyPhen 2 Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000028607
Gene: ENSMUSG00000027184
AA Change: S548P

Domain	Start	End	E-Value	Type
low complexity region	2	43	N/A	INTRINSIC
coiled coil region	52	93	N/A	INTRINSIC
low complexity region	176	186	N/A	INTRINSIC
low complexity region	271	280	N/A	INTRINSIC
low complexity region	309	322	N/A	INTRINSIC
low complexity region	326	335	N/A	INTRINSIC
Pfam:Caprin-1_C	365	681	1.4e-173	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000111147
AA Change: S548P

PolyPhen 2 Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000106777
Gene: ENSMUSG00000027184
AA Change: S548P

Domain	Start	End	E-Value	Type
low complexity region	2	43	N/A	INTRINSIC
coiled coil region	52	93	N/A	INTRINSIC
low complexity region	176	186	N/A	INTRINSIC
low complexity region	271	280	N/A	INTRINSIC
low complexity region	309	322	N/A	INTRINSIC
low complexity region	326	335	N/A	INTRINSIC
Pfam:Caprin-1_C	365	680	2.4e-135	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000143188

SMART Domains

Protein: ENSMUSP00000114423
Gene: ENSMUSG00000027184

Domain	Start	End	E-Value	Type
low complexity region	84	93	N/A	INTRINSIC
low complexity region	122	135	N/A	INTRINSIC
low complexity region	139	148	N/A	INTRINSIC
Pfam:Caprin-1_C	178	254	4.2e-22	PFAM

Predicted Effect

SMART Domains

Protein: ENSMUSP00000117733
Gene: ENSMUSG00000027184
AA Change: S69P

Domain	Start	End	E-Value	Type
Pfam:Caprin-1_C	1	202	8.2e-95	PFAM

Predicted Effect

unknown
Transcript: ENSMUST00000145606
AA Change: S14P

SMART Domains

Protein: ENSMUSP00000119327
Gene: ENSMUSG00000027184
AA Change: S14P

Domain	Start	End	E-Value	Type
Pfam:Caprin-1_C	1	33	2.9e-11	PFAM
Pfam:Caprin-1_C	32	82	1.4e-26	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

99% (66/67)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased fetal size, bent posture, cyanosis, respiratory failure, and neonatal lethality with impaired neuronal network development and reduced dendritic localization of sodium potassium ATPase subunit isoform mRNAs. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actr1a	A	T	19: 46,368,186 (GRCm39)	S254T	probably benign	Het
Adam12	G	A	7: 133,826,542 (GRCm39)	A22V	unknown	Het
Adarb2	A	G	13: 8,619,775 (GRCm39)	D87G	possibly damaging	Het
Aldh6a1	A	T	12: 84,488,855 (GRCm39)	I59N	probably benign	Het
Ankrd50	C	T	3: 38,536,870 (GRCm39)	C161Y	probably damaging	Het
Ankrd7	A	G	6: 18,879,515 (GRCm39)		probably null	Het
Anks1	T	A	17: 28,257,115 (GRCm39)	I707N	probably damaging	Het
Atoh1	A	T	6: 64,706,904 (GRCm39)	M200L	possibly damaging	Het
Bmp1	C	T	14: 70,730,284 (GRCm39)	R416H	probably damaging	Het
Ccdc167	T	A	17: 29,924,247 (GRCm39)	Y63F	possibly damaging	Het
Cfap99	T	A	5: 34,465,284 (GRCm39)	D174E	probably benign	Het
Chil3	T	G	3: 106,056,161 (GRCm39)	N331T	probably benign	Het
Chmp5	T	A	4: 40,949,488 (GRCm39)	I35N	probably damaging	Het
Cpt1c	A	T	7: 44,611,689 (GRCm39)	S537T	probably benign	Het
Dctn1	A	T	6: 83,163,123 (GRCm39)		probably benign	Het
Dhx57	T	A	17: 80,546,287 (GRCm39)	M1366L	probably benign	Het
Dnah9	T	A	11: 65,802,656 (GRCm39)	Y3478F	probably damaging	Het
Efna3	A	G	3: 89,223,947 (GRCm39)	Y81H	probably damaging	Het
Eif4enif1	T	C	11: 3,192,608 (GRCm39)	V812A	probably damaging	Het
Erg	A	T	16: 95,178,216 (GRCm39)	I237N	probably benign	Het
Fem1c	G	T	18: 46,657,185 (GRCm39)	N176K	probably damaging	Het
Fgd4	T	C	16: 16,293,018 (GRCm39)	Y233C	probably benign	Het
Foxd2	G	A	4: 114,765,009 (GRCm39)	A337V	unknown	Het
Gsdma2	T	C	11: 98,548,547 (GRCm39)	L433P	unknown	Het
Hmcn2	C	A	2: 31,343,045 (GRCm39)		probably null	Het
Hnrnpul2	T	C	19: 8,797,788 (GRCm39)	V48A	probably benign	Het
Hsf1	T	A	15: 76,383,387 (GRCm39)	S396T	probably benign	Het
Htr5b	G	T	1: 121,455,487 (GRCm39)	N144K	probably damaging	Het
Igkv9-120	T	C	6: 68,027,172 (GRCm39)	S29P	probably damaging	Het
Igsf10	T	A	3: 59,236,549 (GRCm39)	N1211Y	possibly damaging	Het
Kcnh1	A	C	1: 191,959,447 (GRCm39)	I334L	probably benign	Het
Laptm4b	T	C	15: 34,276,346 (GRCm39)	I158T	probably benign	Het
Mgat4f	A	T	1: 134,318,250 (GRCm39)	M341L	probably benign	Het
Muc5ac	G	C	7: 141,363,040 (GRCm39)	G2117A	unknown	Het
Nav3	T	C	10: 109,539,213 (GRCm39)	T2063A	probably damaging	Het
Nceh1	T	A	3: 27,261,531 (GRCm39)	D47E	probably benign	Het
Nckap5	A	G	1: 125,952,383 (GRCm39)	S1390P	probably damaging	Het
Npepps	T	G	11: 97,158,454 (GRCm39)	I104L	probably benign	Het
Numb	A	G	12: 83,848,051 (GRCm39)	S229P	not run	Het
Opn1sw	T	A	6: 29,380,168 (GRCm39)	I83F	probably benign	Het
Or13p4	T	C	4: 118,547,425 (GRCm39)	S75G	probably damaging	Het
Or5b95	A	T	19: 12,657,576 (GRCm39)	I35F	probably benign	Het
Or5l13	G	A	2: 87,779,822 (GRCm39)	H252Y	probably damaging	Het
Pigg	T	G	5: 108,484,162 (GRCm39)	C603G	probably benign	Het
Pkd1l3	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	8: 110,350,827 (GRCm39)		probably benign	Het
Pkhd1l1	C	A	15: 44,391,133 (GRCm39)	H1504N	probably benign	Het
Plcd4	A	G	1: 74,604,292 (GRCm39)	N757D	possibly damaging	Het
Ppia	A	G	11: 6,369,569 (GRCm39)	T152A	probably benign	Het
Psmd8	G	A	7: 28,878,346 (GRCm39)		probably null	Het
Pxn	T	A	5: 115,686,575 (GRCm39)	Y356N	probably benign	Het
Rhoa	G	C	9: 108,213,914 (GRCm39)	C159S	probably damaging	Het
Rictor	C	T	15: 6,801,635 (GRCm39)	S441L	probably benign	Het
Rita1	C	T	5: 120,749,506 (GRCm39)	C69Y	probably benign	Het
Satb1	A	G	17: 52,074,961 (GRCm39)	S512P	possibly damaging	Het
Sectm1b	A	G	11: 120,945,768 (GRCm39)	I191T	possibly damaging	Het
Slc22a6	A	G	19: 8,599,260 (GRCm39)	K297R	possibly damaging	Het
Snrnp48	T	C	13: 38,405,263 (GRCm39)	Y287H	probably benign	Het
Sntg2	A	T	12: 30,276,910 (GRCm39)	C381S	probably benign	Het
Syngap1	T	A	17: 27,178,938 (GRCm39)	M649K	probably damaging	Het
Taf4	G	A	2: 179,573,822 (GRCm39)	T682M	probably damaging	Het
Thap2	T	C	10: 115,212,289 (GRCm39)	I79V	probably damaging	Het
Thap7	T	C	16: 17,346,467 (GRCm39)	N172S	probably benign	Het
Ticrr	A	G	7: 79,328,844 (GRCm39)	Y661C	possibly damaging	Het
Ttn	T	C	2: 76,606,659 (GRCm39)	N18084D	probably damaging	Het
Usp48	A	T	4: 137,377,728 (GRCm39)	K1020M	probably damaging	Het
Vmn2r12	T	C	5: 109,233,920 (GRCm39)	N764S	probably damaging	Het
Vmn2r91	A	G	17: 18,356,540 (GRCm39)	I736V	possibly damaging	Het
Wfdc6b	T	A	2: 164,459,339 (GRCm39)	C134S	probably damaging	Het
Zcchc2	A	T	1: 105,946,003 (GRCm39)	D481V	probably damaging	Het
Zfp949	G	A	9: 88,451,923 (GRCm39)	G498R	probably damaging	Het

Other mutations in Caprin1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01356:Caprin1	APN	2	103,605,801 (GRCm39)	missense	probably benign	0.00
IGL01369:Caprin1	APN	2	103,599,210 (GRCm39)	missense	probably damaging	0.99
IGL02054:Caprin1	APN	2	103,602,143 (GRCm39)	splice site	probably null
IGL02260:Caprin1	APN	2	103,609,714 (GRCm39)	missense	probably damaging	1.00
IGL02526:Caprin1	APN	2	103,605,948 (GRCm39)	unclassified	probably benign
IGL03405:Caprin1	APN	2	103,609,850 (GRCm39)	missense	probably damaging	1.00
R0027:Caprin1	UTSW	2	103,605,925 (GRCm39)	unclassified	probably benign
R0396:Caprin1	UTSW	2	103,599,914 (GRCm39)	missense	probably damaging	0.99
R0603:Caprin1	UTSW	2	103,627,146 (GRCm39)	missense	probably benign	0.01
R1406:Caprin1	UTSW	2	103,606,332 (GRCm39)	missense	probably benign	0.39
R1406:Caprin1	UTSW	2	103,606,332 (GRCm39)	missense	probably benign	0.39
R1558:Caprin1	UTSW	2	103,606,332 (GRCm39)	missense	possibly damaging	0.75
R1657:Caprin1	UTSW	2	103,599,851 (GRCm39)	missense	probably damaging	0.99
R2945:Caprin1	UTSW	2	103,603,154 (GRCm39)	missense	probably benign	0.04
R3946:Caprin1	UTSW	2	103,627,111 (GRCm39)	missense	probably damaging	0.99
R5208:Caprin1	UTSW	2	103,599,778 (GRCm39)	critical splice donor site	probably null
R6108:Caprin1	UTSW	2	103,606,362 (GRCm39)	missense	possibly damaging	0.93
R6603:Caprin1	UTSW	2	103,605,856 (GRCm39)	missense	probably benign	0.01
R7247:Caprin1	UTSW	2	103,609,819 (GRCm39)	missense	possibly damaging	0.63
R7338:Caprin1	UTSW	2	103,609,768 (GRCm39)	missense	probably benign	0.01
R7624:Caprin1	UTSW	2	103,603,022 (GRCm39)	missense	possibly damaging	0.81
R7946:Caprin1	UTSW	2	103,603,093 (GRCm39)	missense	probably damaging	0.99
R8304:Caprin1	UTSW	2	103,599,862 (GRCm39)	missense	probably damaging	1.00
R8324:Caprin1	UTSW	2	103,613,526 (GRCm39)	nonsense	probably null
R8547:Caprin1	UTSW	2	103,599,862 (GRCm39)	missense	probably damaging	1.00
R8549:Caprin1	UTSW	2	103,599,862 (GRCm39)	missense	probably damaging	1.00
R8782:Caprin1	UTSW	2	103,603,133 (GRCm39)	missense	probably benign	0.06
R8946:Caprin1	UTSW	2	103,608,378 (GRCm39)	missense	probably damaging	1.00
R9332:Caprin1	UTSW	2	103,603,390 (GRCm39)	missense	probably benign	0.00
R9758:Caprin1	UTSW	2	103,606,283 (GRCm39)	missense	possibly damaging	0.70
Z1177:Caprin1	UTSW	2	103,606,279 (GRCm39)	missense	probably null	1.00

Predicted Primers

PCR Primer
(F):5'- ATCTCCTTTCTCAGGGTCTAGC -3'
(R):5'- TGAAGGGAAGGCTGAACTGAGATATT -3'

Sequencing Primer
(F):5'- TTGTCTCCTAGAAGCATCAGAAGC -3'
(R):5'- GGCTGAACTGAGATATTGAAGTC -3'

Posted On

2019-11-26