Mutagenetix > Incidental Mutation

Incidental Mutation 'R7761:Lins1'

597861

Institutional Source

Beutler Lab

Gene Symbol

Lins1

Ensembl Gene

ENSMUSG00000053091

Gene Name

lines homolog 1

Synonyms

2700083B01Rik, Wins2, Lins

MMRRC Submission

045817-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.098) question?

Stock #

R7761 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

66339637-66367004 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 66363853 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 583 (R583*)

Ref Sequence

ENSEMBL: ENSMUSP00000112404 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065323] [ENSMUST00000077967] [ENSMUST00000121777] [ENSMUST00000130161] [ENSMUST00000133771] [ENSMUST00000153773]

AlphaFold

Q3U1D0

Predicted Effect

probably benign
Transcript: ENSMUST00000065323

Predicted Effect

probably null
Transcript: ENSMUST00000077967
AA Change: R578*

SMART Domains

Protein: ENSMUSP00000077117
Gene: ENSMUSG00000053091
AA Change: R578*

Domain	Start	End	E-Value	Type
Pfam:LINES_N	204	554	1.6e-119	PFAM
low complexity region	641	652	N/A	INTRINSIC
low complexity region	684	699	N/A	INTRINSIC
Pfam:LINES_C	717	755	5e-22	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000121777
AA Change: R583*

SMART Domains

Protein: ENSMUSP00000112404
Gene: ENSMUSG00000053091
AA Change: R583*

Domain	Start	End	E-Value	Type
Pfam:LINES_N	210	558	9.5e-150	PFAM
low complexity region	646	657	N/A	INTRINSIC
low complexity region	689	704	N/A	INTRINSIC
Pfam:LINES_C	723	759	2.4e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000130161

Predicted Effect

probably benign
Transcript: ENSMUST00000132351

SMART Domains

Protein: ENSMUSP00000115180
Gene: ENSMUSG00000053091

Domain	Start	End	E-Value	Type
Pfam:LINES_N	155	244	1.1e-26	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000133199

SMART Domains

Protein: ENSMUSP00000115124
Gene: ENSMUSG00000053091

Domain	Start	End	E-Value	Type
Pfam:LINES_N	1	220	3.4e-74	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000133771

Predicted Effect

probably benign
Transcript: ENSMUST00000153773

SMART Domains

Protein: ENSMUSP00000119187
Gene: ENSMUSG00000053091

Domain	Start	End	E-Value	Type
Pfam:LINES_N	75	229	1.3e-40	PFAM

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

96% (72/75)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Drosophila segment polarity gene lin encodes a protein, lines, which plays important roles in development of the epidermis and hindgut. This gene encodes a protein containing a lines-like domain. This gene is located on chromosome 15 and clustered with the gene encoding ankyrin repeat and SOCS box-containing protein 7. [provided by RefSeq, Sep 2010]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca12	C	T	1: 71,369,447 (GRCm39)	C378Y	probably damaging	Het
Adcy6	A	C	15: 98,497,895 (GRCm39)	L421R	probably damaging	Het
AI837181	A	G	19: 5,476,319 (GRCm39)	T161A	probably benign	Het
Ascl2	A	G	7: 142,521,840 (GRCm39)	S203P	possibly damaging	Het
Casq2	G	T	3: 102,052,580 (GRCm39)	W364L	probably damaging	Het
Cdc20	T	C	4: 118,293,186 (GRCm39)	T245A	possibly damaging	Het
Cfap99	C	T	5: 34,480,774 (GRCm39)	Q475*	probably null	Het
Chmp2b	G	A	16: 65,343,745 (GRCm39)	T104I	possibly damaging	Het
Cimap1c	A	G	9: 56,759,822 (GRCm39)	L16P	unknown	Het
Cln3	A	T	7: 126,180,886 (GRCm39)	Y52N	probably damaging	Het
Cpm	A	G	10: 117,519,340 (GRCm39)	Y416C	possibly damaging	Het
Creb3l3	T	C	10: 80,920,833 (GRCm39)	D399G	possibly damaging	Het
Csnk2a1-ps3	A	T	1: 156,352,707 (GRCm39)	K303*	probably null	Het
Dbnl	A	G	11: 5,738,597 (GRCm39)	Q13R	probably benign	Het
Dnah11	T	A	12: 117,987,648 (GRCm39)	Q2418L	probably damaging	Het
Echs1	A	T	7: 139,692,378 (GRCm39)	I123N	probably damaging	Het
Exd2	T	C	12: 80,522,546 (GRCm39)	S2P	probably damaging	Het
F2rl1	A	G	13: 95,650,382 (GRCm39)	F167L	probably damaging	Het
Fam83g	C	A	11: 61,575,584 (GRCm39)	D75E	possibly damaging	Het
Fes	T	C	7: 80,030,615 (GRCm39)	D558G	probably damaging	Het
Ggnbp2	A	T	11: 84,730,803 (GRCm39)		probably null	Het
Gm10283	A	T	8: 60,954,236 (GRCm39)		probably null	Het
Gm14410	T	C	2: 176,885,527 (GRCm39)	N246D	probably benign	Het
Gpr39	A	T	1: 125,605,249 (GRCm39)	Q59L	probably damaging	Het
Hic1	C	T	11: 75,058,200 (GRCm39)	A230T	probably damaging	Het
Hmcn1	A	G	1: 150,598,196 (GRCm39)	L1702P	possibly damaging	Het
Kif13a	A	T	13: 46,951,955 (GRCm39)	Y773N	probably benign	Het
Lrch4	T	A	5: 137,638,025 (GRCm39)	H102Q		Het
Ltn1	T	C	16: 87,208,681 (GRCm39)	T806A	probably benign	Het
Luc7l2	G	A	6: 38,531,999 (GRCm39)		probably null	Het
Mdfic	T	C	6: 15,728,055 (GRCm39)	I25T	unknown	Het
Muc16	G	T	9: 18,491,870 (GRCm39)	T6727N	probably damaging	Het
Nalcn	C	A	14: 123,531,791 (GRCm39)	G1353V	probably damaging	Het
Nalcn	C	G	14: 123,531,792 (GRCm39)	G1353R	probably damaging	Het
Nbeal1	C	T	1: 60,358,500 (GRCm39)	P2476S	probably benign	Het
Nell2	T	C	15: 95,330,550 (GRCm39)	T233A	probably damaging	Het
Nobox	G	A	6: 43,281,125 (GRCm39)	Q450*	probably null	Het
Nostrin	T	G	2: 68,991,466 (GRCm39)	L153R	possibly damaging	Het
Nup160	T	C	2: 90,533,456 (GRCm39)	V635A	probably benign	Het
Opn4	T	A	14: 34,320,809 (GRCm39)	M84L	probably benign	Het
Or4f14	T	A	2: 111,743,222 (GRCm39)	T18S	probably benign	Het
Or4f53	T	C	2: 111,087,519 (GRCm39)	S20P	possibly damaging	Het
Or4k77	C	T	2: 111,199,138 (GRCm39)	H54Y	probably benign	Het
Or56a42-ps1	A	G	7: 104,775,926 (GRCm39)	I184T	probably benign	Het
Papolg	T	C	11: 23,841,884 (GRCm39)	Q13R	probably benign	Het
Pax6	T	G	2: 105,522,036 (GRCm39)	F231C	probably damaging	Het
Pcdha3	T	C	18: 37,079,347 (GRCm39)	Y30H	probably damaging	Het
Pkhd1l1	A	G	15: 44,393,280 (GRCm39)	T1872A	probably benign	Het
Pln	T	C	10: 53,220,005 (GRCm39)	S16P	probably damaging	Het
Ppp4r3a	C	T	12: 101,022,080 (GRCm39)	E308K	probably damaging	Het
Prp2	C	T	6: 132,577,306 (GRCm39)	Q198*	probably null	Het
Ptpn20	T	A	14: 33,344,509 (GRCm39)	S144R	probably benign	Het
Pum3	A	T	19: 27,404,492 (GRCm39)	F10L	probably benign	Het
Rapgefl1	A	T	11: 98,728,485 (GRCm39)	D169V	probably benign	Het
Rbm12b1	T	C	4: 12,146,460 (GRCm39)	Y811H	possibly damaging	Het
Rcor1	T	A	12: 111,076,297 (GRCm39)	F418L		Het
Rsf1	CGGCGGCGG	CGGCGGCGGGGGCGGCGG	7: 97,229,127 (GRCm39)		probably benign	Het
Samd11	T	C	4: 156,332,282 (GRCm39)	T520A	probably benign	Het
Scn3a	T	A	2: 65,359,798 (GRCm39)	T137S	possibly damaging	Het
Sgo2b	T	C	8: 64,379,946 (GRCm39)	N962S	probably benign	Het
Slc39a12	T	A	2: 14,439,141 (GRCm39)	I465N	probably benign	Het
Spcs1	T	A	14: 30,723,607 (GRCm39)		probably benign	Het
Stard9	T	C	2: 120,529,860 (GRCm39)	V2039A	probably benign	Het
Syt11	G	T	3: 88,669,778 (GRCm39)	T38K	possibly damaging	Het
Tcf7l2	T	A	19: 55,914,468 (GRCm39)	C454S	probably damaging	Het
Tfap2a	G	C	13: 40,878,656 (GRCm39)	H155D	probably benign	Het
Trim46	T	C	3: 89,149,565 (GRCm39)	K273R	probably damaging	Het
Trim60	A	T	8: 65,453,964 (GRCm39)	V95E	possibly damaging	Het
Ttc39d	G	A	17: 80,524,741 (GRCm39)	A467T	probably damaging	Het
Ttn	T	C	2: 76,550,274 (GRCm39)	T31636A	probably benign	Het
U2surp	A	G	9: 95,370,814 (GRCm39)	V420A	probably damaging	Het
Vps26b	T	C	9: 26,940,826 (GRCm39)	D31G	probably benign	Het
Vps35	T	C	8: 86,010,707 (GRCm39)	E212G	possibly damaging	Het
Zfp1010	T	C	2: 176,957,310 (GRCm39)	I63V	possibly damaging	Het

Other mutations in Lins1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00672:Lins1	APN	7	66,364,279 (GRCm39)	nonsense	probably null
IGL01402:Lins1	APN	7	66,363,676 (GRCm39)	missense	probably damaging	0.99
IGL01404:Lins1	APN	7	66,363,676 (GRCm39)	missense	probably damaging	0.99
IGL01887:Lins1	APN	7	66,360,129 (GRCm39)	missense	probably damaging	0.98
IGL02887:Lins1	APN	7	66,363,931 (GRCm39)	missense	probably damaging	0.99
R0089:Lins1	UTSW	7	66,361,796 (GRCm39)	unclassified	probably benign
R1473:Lins1	UTSW	7	66,361,794 (GRCm39)	critical splice donor site	probably null
R1556:Lins1	UTSW	7	66,360,385 (GRCm39)	nonsense	probably null
R1580:Lins1	UTSW	7	66,364,239 (GRCm39)	missense	probably benign	0.10
R1794:Lins1	UTSW	7	66,361,657 (GRCm39)	missense	probably damaging	1.00
R1848:Lins1	UTSW	7	66,364,070 (GRCm39)	missense	probably damaging	0.98
R3969:Lins1	UTSW	7	66,357,946 (GRCm39)	missense	probably benign	0.31
R4760:Lins1	UTSW	7	66,364,435 (GRCm39)	unclassified	probably benign
R4766:Lins1	UTSW	7	66,360,389 (GRCm39)	missense	possibly damaging	0.92
R4811:Lins1	UTSW	7	66,357,898 (GRCm39)	missense	probably benign	0.00
R4941:Lins1	UTSW	7	66,359,198 (GRCm39)	splice site	probably benign
R5419:Lins1	UTSW	7	66,357,843 (GRCm39)	unclassified	probably benign
R6140:Lins1	UTSW	7	66,361,672 (GRCm39)	missense	probably damaging	1.00
R6258:Lins1	UTSW	7	66,360,496 (GRCm39)	critical splice donor site	probably null
R6713:Lins1	UTSW	7	66,358,230 (GRCm39)	missense	probably benign	0.00
R6787:Lins1	UTSW	7	66,363,902 (GRCm39)	missense	probably benign	0.32
R7176:Lins1	UTSW	7	66,363,553 (GRCm39)	missense	probably benign	0.10
R7455:Lins1	UTSW	7	66,361,692 (GRCm39)	missense	probably benign	0.14
R9020:Lins1	UTSW	7	66,357,961 (GRCm39)	missense	probably damaging	1.00
R9509:Lins1	UTSW	7	66,358,119 (GRCm39)	nonsense	probably null
Z1176:Lins1	UTSW	7	66,360,012 (GRCm39)	missense	possibly damaging	0.54

Predicted Primers

PCR Primer
(F):5'- CATGGCTGTAACCCTCACTGTG -3'
(R):5'- ATCTACCAGACTCTGCGGTG -3'

Sequencing Primer
(F):5'- GAATGTAGCATTCGATTCTACTGTTC -3'
(R):5'- CGGTGTCCGGGAAGGTG -3'

Posted On

2019-11-26