Mutagenetix > Incidental Mutation

Incidental Mutation 'R7764:Zic1'

598129

Institutional Source

Beutler Lab

Gene Symbol

Zic1

Ensembl Gene

ENSMUSG00000032368

Gene Name

zinc finger protein of the cerebellum 1

Synonyms

odd-paired homolog

MMRRC Submission

045820-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.926) question?

Stock #

R7764 (G1)

Quality Score

165.009

Status

Not validated

Chromosome

Chromosomal Location

91240111-91247863 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

C to T at 91247745 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133974 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034927] [ENSMUST00000065360] [ENSMUST00000172646] [ENSMUST00000173054] [ENSMUST00000173342]

AlphaFold

P46684

Predicted Effect

probably benign
Transcript: ENSMUST00000034927

SMART Domains

Protein: ENSMUSP00000034927
Gene: ENSMUSG00000032368

Domain	Start	End	E-Value	Type
low complexity region	68	85	N/A	INTRINSIC
low complexity region	110	134	N/A	INTRINSIC
ZnF_C2H2	238	260	6.82e1	SMART
ZnF_C2H2	269	296	7.49e0	SMART
ZnF_C2H2	302	326	8.02e-5	SMART
ZnF_C2H2	332	356	1.58e-3	SMART
ZnF_C2H2	362	384	4.54e-4	SMART
low complexity region	386	400	N/A	INTRINSIC
low complexity region	403	427	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000065360

SMART Domains

Protein: ENSMUSP00000068858
Gene: ENSMUSG00000032368

Domain	Start	End	E-Value	Type
low complexity region	68	85	N/A	INTRINSIC
low complexity region	110	134	N/A	INTRINSIC
ZnF_C2H2	238	260	6.82e1	SMART
ZnF_C2H2	269	296	7.49e0	SMART
ZnF_C2H2	302	326	8.02e-5	SMART
ZnF_C2H2	332	356	1.58e-3	SMART
ZnF_C2H2	362	384	4.54e-4	SMART
low complexity region	386	400	N/A	INTRINSIC
low complexity region	403	427	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000172646

SMART Domains

Protein: ENSMUSP00000134053
Gene: ENSMUSG00000036972

Domain	Start	End	E-Value	Type
ZnF_C2H2	128	162	4.74e1	SMART
ZnF_C2H2	171	198	7.68e0	SMART
ZnF_C2H2	204	228	8.02e-5	SMART
ZnF_C2H2	234	258	7.15e-2	SMART
ZnF_C2H2	264	288	3.21e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000173054

SMART Domains

Protein: ENSMUSP00000134364
Gene: ENSMUSG00000036972

Domain	Start	End	E-Value	Type
PDB:2EJ4\|A	122	181	3e-16	PDB
Blast:ZnF_C2H2	128	151	5e-9	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000173342

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the ZIC family of C2H2-type zinc finger proteins. Members of this family are important during development. Aberrant expression of this gene is seen in medulloblastoma, a childhood brain tumor. This gene is closely linked to the gene encoding zinc finger protein of the cerebellum 4, a related family member on chromosome 3. This gene encodes a transcription factor that can bind and transactivate the apolipoprotein E gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutants show cerebellar hypoplasia with a missing lobule of the anterior lobe. Newborn pups suckle poorly. 50% die within one day of birth and almost all die within 3 weeks; longer survivors show marked ataxia and exhibit tonic convulsions. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcf3	T	G	16: 20,368,040 (GRCm39)	L93V	probably benign	Het
Adss2	A	C	1: 177,591,827 (GRCm39)	M452R	probably damaging	Het
Aldh3b1	T	A	19: 3,971,563 (GRCm39)	K102*	probably null	Het
Ccdc162	A	T	10: 41,566,109 (GRCm39)	V78D	possibly damaging	Het
Ccr3	T	C	9: 123,829,451 (GRCm39)	V262A	probably benign	Het
Cdk13	A	T	13: 17,895,890 (GRCm39)		probably null	Het
Cdyl	A	T	13: 36,000,126 (GRCm39)	T136S	possibly damaging	Het
Chd2	T	C	7: 73,121,567 (GRCm39)	D1015G	probably null	Het
Cntn2	C	A	1: 132,450,101 (GRCm39)	A598S	probably benign	Het
Cxxc4	G	T	3: 133,945,856 (GRCm39)	G146C	unknown	Het
Dnah2	G	A	11: 69,348,984 (GRCm39)	T2501I	probably benign	Het
Dock8	T	A	19: 25,074,899 (GRCm39)	I471N	probably benign	Het
Eaf2	A	G	16: 36,645,045 (GRCm39)	V59A	probably damaging	Het
Egflam	T	A	15: 7,347,736 (GRCm39)	I65F	probably damaging	Het
Exoc3l	A	G	8: 106,017,333 (GRCm39)	V577A	possibly damaging	Het
Folh1	A	T	7: 86,412,126 (GRCm39)	M215K	probably benign	Het
Fosb	T	C	7: 19,038,971 (GRCm39)	D271G	possibly damaging	Het
Frmd4b	A	G	6: 97,272,891 (GRCm39)	Y834H	probably damaging	Het
Fsip2	T	C	2: 82,811,252 (GRCm39)	S2524P	possibly damaging	Het
Gbp3	A	G	3: 142,271,024 (GRCm39)	T143A	probably benign	Het
Grk2	A	T	19: 4,337,391 (GRCm39)	L632Q	probably damaging	Het
Hars1	A	T	18: 36,903,237 (GRCm39)	D364E	probably damaging	Het
Hsd17b4	G	T	18: 50,279,482 (GRCm39)	G154*	probably null	Het
Kif5c	T	C	2: 49,617,973 (GRCm39)		probably null	Het
Kif5c	T	C	2: 49,639,339 (GRCm39)	L800P	probably damaging	Het
Krt19	T	C	11: 100,032,218 (GRCm39)	N282S	probably benign	Het
Med23	T	G	10: 24,785,818 (GRCm39)		probably null	Het
Meltf	A	G	16: 31,699,085 (GRCm39)	Q65R	probably benign	Het
Mms22l	T	C	4: 24,598,842 (GRCm39)	S1106P	probably damaging	Het
Mprip	A	G	11: 59,655,242 (GRCm39)	T733A	probably damaging	Het
Mul1	G	A	4: 138,162,080 (GRCm39)	G4S	possibly damaging	Het
Myl10	G	C	5: 136,726,825 (GRCm39)	V70L	probably benign	Het
Mylk	G	T	16: 34,742,553 (GRCm39)	V1022L	probably benign	Het
Ncald	G	T	15: 37,397,454 (GRCm39)	N75K	probably damaging	Het
Nfib	A	G	4: 82,238,731 (GRCm39)	S492P	possibly damaging	Het
Notch2	A	T	3: 98,050,304 (GRCm39)	I1860F	probably damaging	Het
Or9i14	A	G	19: 13,792,111 (GRCm39)	I281T	probably benign	Het
Oxr1	T	C	15: 41,683,263 (GRCm39)	S298P	probably benign	Het
Pcnt	T	C	10: 76,190,082 (GRCm39)	D2818G	probably benign	Het
Pmpcb	G	A	5: 21,948,450 (GRCm39)	A244T	probably damaging	Het
Poln	A	G	5: 34,274,151 (GRCm39)		probably null	Het
Polr1a	G	A	6: 71,930,054 (GRCm39)	V914M	probably damaging	Het
Rab15	A	C	12: 76,851,215 (GRCm39)		probably null	Het
Rasgrf1	G	T	9: 89,876,747 (GRCm39)	S704I	possibly damaging	Het
Rsf1	GGCGGCGG	GGCGGCGGGCGCGGCGG	7: 97,229,134 (GRCm39)		probably benign	Het
Sart1	C	A	19: 5,438,613 (GRCm39)	G15W	probably damaging	Het
Scrib	T	C	15: 75,919,242 (GRCm39)	*1666W	probably null	Het
Setd1b	G	C	5: 123,284,622 (GRCm39)	R184P	unknown	Het
Sfxn2	A	T	19: 46,574,179 (GRCm39)	N123I	probably damaging	Het
Slc22a3	A	G	17: 12,677,383 (GRCm39)	W262R	probably damaging	Het
Slc38a10	A	G	11: 119,995,905 (GRCm39)	L1064P	probably damaging	Het
Sorcs2	A	T	5: 36,181,416 (GRCm39)	S1077R	possibly damaging	Het
Them7	G	T	2: 105,128,171 (GRCm39)	E51*	probably null	Het
Ubc	A	G	5: 125,465,133 (GRCm39)	S65P	possibly damaging	Het
Ubqln3	A	T	7: 103,790,443 (GRCm39)	M549K	possibly damaging	Het
Vmn1r222	A	G	13: 23,416,529 (GRCm39)	L228P	probably damaging	Het
Vmn2r60	A	G	7: 41,844,535 (GRCm39)	T633A	probably damaging	Het
Zfp382	T	C	7: 29,832,700 (GRCm39)	V117A	probably benign	Het
Zmym4	A	T	4: 126,819,409 (GRCm39)	F165I	probably benign	Het

Other mutations in Zic1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02022:Zic1	APN	9	91,244,525 (GRCm39)	splice site	probably null
IGL02669:Zic1	APN	9	91,246,486 (GRCm39)	missense	possibly damaging	0.71
IGL02968:Zic1	APN	9	91,244,543 (GRCm39)	missense	probably damaging	1.00
PIT4812001:Zic1	UTSW	9	91,246,394 (GRCm39)	missense	probably damaging	1.00
R1493:Zic1	UTSW	9	91,246,809 (GRCm39)	missense	probably damaging	1.00
R1599:Zic1	UTSW	9	91,243,741 (GRCm39)	missense	probably benign	0.08
R1742:Zic1	UTSW	9	91,243,629 (GRCm39)	missense	probably damaging	0.98
R2158:Zic1	UTSW	9	91,246,946 (GRCm39)	missense	possibly damaging	0.73
R4587:Zic1	UTSW	9	91,246,875 (GRCm39)	missense	probably damaging	1.00
R4735:Zic1	UTSW	9	91,246,558 (GRCm39)	missense	possibly damaging	0.55
R4830:Zic1	UTSW	9	91,244,584 (GRCm39)	missense	probably damaging	1.00
R5186:Zic1	UTSW	9	91,246,424 (GRCm39)	missense	probably damaging	1.00
R5702:Zic1	UTSW	9	91,246,133 (GRCm39)	missense	probably damaging	0.99
R6298:Zic1	UTSW	9	91,246,556 (GRCm39)	missense	probably damaging	1.00
R7221:Zic1	UTSW	9	91,246,785 (GRCm39)	missense	probably damaging	1.00
R7250:Zic1	UTSW	9	91,247,028 (GRCm39)	missense	probably damaging	0.99
R7806:Zic1	UTSW	9	91,247,024 (GRCm39)	missense	probably damaging	1.00
R7951:Zic1	UTSW	9	91,244,654 (GRCm39)	missense	probably damaging	0.99
R8408:Zic1	UTSW	9	91,246,847 (GRCm39)	missense	probably damaging	0.97
R8483:Zic1	UTSW	9	91,246,424 (GRCm39)	missense	probably damaging	1.00
R8754:Zic1	UTSW	9	91,244,701 (GRCm39)	intron	probably benign
R9185:Zic1	UTSW	9	91,246,542 (GRCm39)	missense	probably benign	0.26
R9269:Zic1	UTSW	9	91,246,373 (GRCm39)	missense	probably damaging	1.00
R9395:Zic1	UTSW	9	91,247,070 (GRCm39)	start codon destroyed	probably benign	0.21
R9579:Zic1	UTSW	9	91,246,790 (GRCm39)	missense	probably damaging	1.00
R9725:Zic1	UTSW	9	91,246,875 (GRCm39)	missense	probably damaging	1.00
RF011:Zic1	UTSW	9	91,246,383 (GRCm39)	missense	probably benign	0.00
Z1177:Zic1	UTSW	9	91,246,632 (GRCm39)	missense	probably damaging	1.00
Z1186:Zic1	UTSW	9	91,243,783 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCCGGATTTGTGGCATAGAG -3'
(R):5'- TACCTGGGATTGATGAGGCG -3'

Sequencing Primer
(F):5'- ATGTGAACGCCAGAGCC -3'
(R):5'- TTGCTGCTATCAGTCTCG -3'

Posted On

2019-11-26