Mutagenetix > Incidental Mutation

Incidental Mutation 'R7775:Coro6'

598842

Institutional Source

Beutler Lab

Gene Symbol

Coro6

Ensembl Gene

ENSMUSG00000020836

Gene Name

coronin 6

Synonyms

clipin E

MMRRC Submission

045831-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7775 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

77353237-77361310 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 77356599 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 102 (D102E)

Ref Sequence

ENSEMBL: ENSMUSP00000021190 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021190] [ENSMUST00000037593] [ENSMUST00000052515] [ENSMUST00000079770] [ENSMUST00000092892] [ENSMUST00000102493] [ENSMUST00000108391] [ENSMUST00000130255] [ENSMUST00000145934]

AlphaFold

Q920M5

Predicted Effect

probably benign
Transcript: ENSMUST00000021190
AA Change: D102E

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000021190
Gene: ENSMUSG00000020836
AA Change: D102E

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	257	391	1.19e-91	SMART
low complexity region	414	429	N/A	INTRINSIC
coiled coil region	430	463	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000037593

SMART Domains

Protein: ENSMUSP00000073584
Gene: ENSMUSG00000037907

Domain	Start	End	E-Value	Type
ANK	13	43	3.16e2	SMART
ANK	47	76	2.85e-5	SMART
ANK	80	109	1.17e2	SMART
Pfam:GPCR_chapero_1	163	491	5.5e-111	PFAM
UIM	503	522	1.81e-1	SMART
low complexity region	552	580	N/A	INTRINSIC
UIM	585	604	3.15e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000052515
AA Change: D102E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000056862
Gene: ENSMUSG00000020836
AA Change: D102E

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	217	351	1.19e-91	SMART
low complexity region	374	389	N/A	INTRINSIC
coiled coil region	390	424	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000079770
AA Change: D102E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000078703
Gene: ENSMUSG00000020836
AA Change: D102E

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	217	351	1.19e-91	SMART
low complexity region	374	389	N/A	INTRINSIC
coiled coil region	390	423	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000092892

SMART Domains

Protein: ENSMUSP00000090568
Gene: ENSMUSG00000037907

Domain	Start	End	E-Value	Type
ANK	13	43	3.16e2	SMART
ANK	47	76	2.85e-5	SMART
ANK	80	109	1.17e2	SMART
Pfam:GPCR_chapero_1	163	490	3.2e-110	PFAM
UIM	503	522	1.81e-1	SMART
low complexity region	673	686	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102493
AA Change: D102E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000099551
Gene: ENSMUSG00000020836
AA Change: D102E

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	257	391	1.19e-91	SMART
low complexity region	414	429	N/A	INTRINSIC
coiled coil region	430	463	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000108391
AA Change: D102E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000104028
Gene: ENSMUSG00000020836
AA Change: D102E

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	257	391	1.19e-91	SMART
low complexity region	414	429	N/A	INTRINSIC
coiled coil region	430	463	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000130255

Predicted Effect

probably benign
Transcript: ENSMUST00000145934

SMART Domains

Protein: ENSMUSP00000119633
Gene: ENSMUSG00000037907

Domain	Start	End	E-Value	Type
Pfam:GPCR_chapero_1	2	276	9.7e-90	PFAM
UIM	288	307	1.81e-1	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (64/64)

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Arhgap35	T	C	7: 16,296,573 (GRCm39)	K831E	probably benign	Het
Arpc1a	C	T	5: 145,041,622 (GRCm39)	R302C	probably benign	Het
Asb5	A	C	8: 55,037,827 (GRCm39)	H173P		Het
Atp6v0a2	A	G	5: 124,779,443 (GRCm39)	E186G	probably damaging	Het
Bbs2	A	T	8: 94,816,388 (GRCm39)		probably null	Het
Capn7	A	G	14: 31,074,367 (GRCm39)	T257A	probably benign	Het
Car4	T	C	11: 84,856,449 (GRCm39)	S246P	probably damaging	Het
Chrm5	A	G	2: 112,310,301 (GRCm39)	S272P	probably benign	Het
Chrna6	T	C	8: 27,897,392 (GRCm39)	I162V	probably damaging	Het
Chst12	T	A	5: 140,509,376 (GRCm39)	M1K	probably null	Het
Cldn6	T	A	17: 23,900,581 (GRCm39)	C182S	probably damaging	Het
Cysltr2	A	G	14: 73,267,203 (GRCm39)	I169T	probably benign	Het
Dtx4	G	T	19: 12,469,374 (GRCm39)	P251Q	probably benign	Het
Dyrk3	C	T	1: 131,057,364 (GRCm39)	V270I	possibly damaging	Het
Efhc1	A	T	1: 21,049,685 (GRCm39)	Y515F	probably damaging	Het
Ep300	T	C	15: 81,470,887 (GRCm39)	S20P	unknown	Het
Fmnl2	C	T	2: 52,963,692 (GRCm39)	L275F	unknown	Het
Fstl4	C	T	11: 53,067,798 (GRCm39)	Q554*	probably null	Het
Gal3st2b	G	T	1: 93,868,506 (GRCm39)	D246Y	probably damaging	Het
Gkap1	A	T	13: 58,398,966 (GRCm39)	D188E	probably benign	Het
Gm14226	T	A	2: 154,866,630 (GRCm39)	C196S	possibly damaging	Het
Gm8297	A	G	14: 16,167,939 (GRCm39)	N193S	possibly damaging	Het
Grm8	T	C	6: 27,363,671 (GRCm39)	R615G	possibly damaging	Het
Ing1	A	G	8: 11,611,814 (GRCm39)	E178G	probably benign	Het
Kansl3	A	T	1: 36,387,758 (GRCm39)	L530H	probably damaging	Het
Kcna5	A	T	6: 126,511,768 (GRCm39)	L120*	probably null	Het
Kif26b	T	A	1: 178,692,441 (GRCm39)	S461T	probably benign	Het
L3mbtl3	A	T	10: 26,228,215 (GRCm39)	V15E	unknown	Het
Lama4	A	T	10: 38,954,843 (GRCm39)	H1132L	probably damaging	Het
Ldlrad4	G	T	18: 68,368,740 (GRCm39)	A66S	possibly damaging	Het
Ldlrad4	T	C	18: 68,368,827 (GRCm39)	S95P	probably damaging	Het
Liph	G	T	16: 21,777,664 (GRCm39)	L379I	probably damaging	Het
Lrp2	T	A	2: 69,331,883 (GRCm39)	E1624V	possibly damaging	Het
Matn2	A	T	15: 34,399,223 (GRCm39)	H370L	possibly damaging	Het
Mettl23	T	G	11: 116,740,096 (GRCm39)	V189G	probably benign	Het
Mpp4	G	A	1: 59,162,672 (GRCm39)	T543M	not run	Het
Mrps15	A	T	4: 125,945,170 (GRCm39)	N119I	probably damaging	Het
Or10d4	C	A	9: 39,580,534 (GRCm39)	F60L	possibly damaging	Het
Or5ac21	A	T	16: 59,123,614 (GRCm39)	I33F	probably damaging	Het
Or7d9	A	G	9: 20,193,708 (GRCm39)		probably benign	Het
Or8b36	T	A	9: 37,937,963 (GRCm39)	I287N	probably damaging	Het
Or8g21	T	A	9: 38,906,203 (GRCm39)	H176L	probably damaging	Het
Pax8	A	G	2: 24,325,913 (GRCm39)	S324P	possibly damaging	Het
Pcdha11	A	T	18: 37,145,733 (GRCm39)	Y608F	possibly damaging	Het
Pcdhga5	A	G	18: 37,828,578 (GRCm39)	D342G	probably damaging	Het
Pde6d	A	G	1: 86,471,250 (GRCm39)	S143P	probably damaging	Het
Plau	A	G	14: 20,892,393 (GRCm39)	S393G	probably benign	Het
Plec	A	T	15: 76,061,135 (GRCm39)	I2934N	probably damaging	Het
Primpol	G	T	8: 47,039,459 (GRCm39)	P387Q	probably damaging	Het
Prph2	T	C	17: 47,221,732 (GRCm39)	L37S	possibly damaging	Het
Prrt4	A	G	6: 29,177,718 (GRCm39)	L17P	probably damaging	Het
Pycr3	T	C	15: 75,790,138 (GRCm39)	D171G	probably damaging	Het
Rapgefl1	A	G	11: 98,741,980 (GRCm39)	N648S	probably damaging	Het
Rapsn	A	G	2: 90,875,293 (GRCm39)	T359A	probably benign	Het
Sap25	C	T	5: 137,640,186 (GRCm39)	R66W	probably benign	Het
Setd6	A	T	8: 96,442,866 (GRCm39)	H101L	probably benign	Het
Slc22a3	G	T	17: 12,683,350 (GRCm39)	A171E	probably damaging	Het
Tbc1d2	C	T	4: 46,637,746 (GRCm39)		probably null	Het
Tfap2b	G	A	1: 19,304,531 (GRCm39)	G447D	probably damaging	Het
Txndc2	A	G	17: 65,945,238 (GRCm39)	V313A	probably benign	Het
Uevld	A	T	7: 46,576,100 (GRCm39)	I462N	probably damaging	Het
Vmn2r120	T	C	17: 57,832,942 (GRCm39)	Y79C	probably damaging	Het
Vwa8	T	C	14: 79,275,587 (GRCm39)	V790A	probably benign	Het
Zfp936	A	G	7: 42,839,720 (GRCm39)	T396A	possibly damaging	Het

Other mutations in Coro6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00952:Coro6	APN	11	77,359,291 (GRCm39)	missense	probably damaging	1.00
IGL01086:Coro6	APN	11	77,357,374 (GRCm39)	nonsense	probably null
IGL03184:Coro6	APN	11	77,354,779 (GRCm39)	missense	probably damaging	1.00
R0365:Coro6	UTSW	11	77,354,916 (GRCm39)	missense	probably benign	0.28
R1712:Coro6	UTSW	11	77,360,293 (GRCm39)	missense	probably benign	0.19
R1738:Coro6	UTSW	11	77,360,251 (GRCm39)	missense	probably benign	0.02
R2900:Coro6	UTSW	11	77,358,639 (GRCm39)	missense	probably benign
R3081:Coro6	UTSW	11	77,359,738 (GRCm39)	missense	probably damaging	1.00
R3700:Coro6	UTSW	11	77,358,129 (GRCm39)	missense	probably damaging	1.00
R4503:Coro6	UTSW	11	77,360,272 (GRCm39)	missense	probably benign	0.31
R4740:Coro6	UTSW	11	77,360,025 (GRCm39)	missense	possibly damaging	0.59
R4749:Coro6	UTSW	11	77,359,974 (GRCm39)	missense	probably damaging	1.00
R5501:Coro6	UTSW	11	77,358,622 (GRCm39)	missense	probably damaging	1.00
R5996:Coro6	UTSW	11	77,357,322 (GRCm39)	missense	probably benign	0.02
R6590:Coro6	UTSW	11	77,356,606 (GRCm39)	missense	probably benign	0.31
R6619:Coro6	UTSW	11	77,357,030 (GRCm39)	missense	possibly damaging	0.85
R6690:Coro6	UTSW	11	77,356,606 (GRCm39)	missense	probably benign	0.31
R7052:Coro6	UTSW	11	77,357,056 (GRCm39)	missense	probably benign	0.16
R7207:Coro6	UTSW	11	77,358,089 (GRCm39)	missense	possibly damaging	0.46
R8743:Coro6	UTSW	11	77,357,265 (GRCm39)	missense	probably damaging	0.98
R8865:Coro6	UTSW	11	77,359,917 (GRCm39)	missense	probably damaging	1.00
R9169:Coro6	UTSW	11	77,359,329 (GRCm39)	missense	probably damaging	1.00
R9384:Coro6	UTSW	11	77,360,218 (GRCm39)	missense	probably benign	0.32
X0064:Coro6	UTSW	11	77,359,434 (GRCm39)	critical splice donor site	probably null
Z1176:Coro6	UTSW	11	77,358,691 (GRCm39)	frame shift	probably null
Z1177:Coro6	UTSW	11	77,359,935 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGTAAACAAATCTACTGCCCACTTC -3'
(R):5'- AGGGCGCAGGTATGTATTTAAC -3'

Sequencing Primer
(F):5'- TACTTAACAAGTGCTGGGCC -3'
(R):5'- CTAAAAATAATCTGGGAACTGGGC -3'

Posted On

2019-11-26