Mutagenetix > Incidental Mutation

Incidental Mutation 'R7780:Galntl6'

599165

Institutional Source

Beutler Lab

Gene Symbol

Galntl6

Ensembl Gene

ENSMUSG00000096914

Gene Name

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

Synonyms

4930431L04Rik, 1700021K10Rik

MMRRC Submission

045836-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.069) question?

Stock #

R7780 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

58227086-59365674 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

C to T at 58880733 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000145321 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000146513] [ENSMUST00000188531] [ENSMUST00000204128]

AlphaFold

E5D8G1

Predicted Effect

probably benign
Transcript: ENSMUST00000146513

SMART Domains

Protein: ENSMUSP00000118306
Gene: ENSMUSG00000096914

Domain	Start	End	E-Value	Type
transmembrane domain	13	30	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000188531

SMART Domains

Protein: ENSMUSP00000139677
Gene: ENSMUSG00000096914

Domain	Start	End	E-Value	Type
Pfam:Glycos_transf_2	98	139	2.4e-7	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000204128

SMART Domains

Protein: ENSMUSP00000145321
Gene: ENSMUSG00000096914

Domain	Start	End	E-Value	Type
transmembrane domain	13	31	N/A	INTRINSIC
Pfam:Glyco_tranf_2_3	140	404	2.1e-9	PFAM
Pfam:Glycos_transf_2	143	328	7.3e-33	PFAM
Pfam:Glyco_tranf_2_2	143	356	1.2e-8	PFAM
Pfam:Glyco_transf_7C	297	371	6.2e-12	PFAM
RICIN	452	585	7.9e-21	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (77/77)

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam5	C	T	8: 25,294,432 (GRCm39)	R389K	possibly damaging	Het
Ahnak2	C	T	12: 112,746,716 (GRCm39)	V1205M		Het
Ccr3	A	G	9: 123,828,989 (GRCm39)	Y108C	probably benign	Het
Cers5	T	G	15: 99,637,589 (GRCm39)	H220P	probably damaging	Het
Cfap61	A	T	2: 145,995,692 (GRCm39)	N1086Y	possibly damaging	Het
Cip2a	T	A	16: 48,822,023 (GRCm39)	L217*	probably null	Het
Clstn3	T	C	6: 124,439,161 (GRCm39)	E32G	probably damaging	Het
Cox20	T	C	1: 178,149,566 (GRCm39)	C72R	probably benign	Het
Csf1	A	T	3: 107,657,709 (GRCm39)	N154K	probably damaging	Het
Cyp2j7	T	A	4: 96,118,256 (GRCm39)	K112N	probably benign	Het
Drosha	A	G	15: 12,848,172 (GRCm39)	D488G	probably benign	Het
Edem1	A	G	6: 108,818,589 (GRCm39)	K199R	probably benign	Het
Esyt2	T	C	12: 116,305,718 (GRCm39)	I316T	probably benign	Het
Evpl	C	T	11: 116,125,000 (GRCm39)	R154H	not run	Het
Fbn1	A	G	2: 125,143,678 (GRCm39)	L2817P	probably benign	Het
Fbxo42	T	A	4: 140,921,131 (GRCm39)		probably null	Het
Fbxo43	T	C	15: 36,162,358 (GRCm39)	D283G	probably damaging	Het
Fdxr	A	T	11: 115,167,656 (GRCm39)	S20T	probably benign	Het
Fkbp10	T	C	11: 100,312,048 (GRCm39)	Y203H	probably damaging	Het
Gask1b	G	A	3: 79,848,711 (GRCm39)	G486S	probably damaging	Het
Gm26657	C	A	4: 56,741,056 (GRCm39)	Y80*	probably null	Het
Gm973	T	A	1: 59,597,289 (GRCm39)	W440R	probably damaging	Het
Helz	T	A	11: 107,528,689 (GRCm39)	F903Y	probably damaging	Het
Iqcf4	T	A	9: 106,445,860 (GRCm39)	I96F	possibly damaging	Het
Kcnq5	T	A	1: 22,031,555 (GRCm39)	Q84L	probably benign	Het
Krit1	G	A	5: 3,862,772 (GRCm39)	G254S	probably damaging	Het
Krtap6-2	A	T	16: 89,216,510 (GRCm39)	Y152*	probably null	Het
Loricrin	A	T	3: 91,988,460 (GRCm39)	Y275*	probably null	Het
Map4	T	C	9: 109,863,720 (GRCm39)	I315T	probably benign	Het
Mcpt1	T	A	14: 56,256,609 (GRCm39)		probably null	Het
Mdh1b	C	A	1: 63,759,133 (GRCm39)	S153I	possibly damaging	Het
Mfsd12	C	A	10: 81,193,718 (GRCm39)	A96E	probably benign	Het
Mki67	T	C	7: 135,315,697 (GRCm39)	E55G	probably benign	Het
Mterf4	T	C	1: 93,232,689 (GRCm39)	E54G	probably benign	Het
Mucl3	A	G	17: 35,947,874 (GRCm39)	S452P	possibly damaging	Het
Nuggc	T	A	14: 65,882,490 (GRCm39)	I745N	probably damaging	Het
Or6k6	T	C	1: 173,945,115 (GRCm39)	I156V	probably benign	Het
Or7g18	A	G	9: 18,786,910 (GRCm39)	T93A	possibly damaging	Het
Parg	A	T	14: 31,930,758 (GRCm39)	N126I	possibly damaging	Het
Pcdh9	T	C	14: 94,123,987 (GRCm39)	I728V	possibly damaging	Het
Pcdha1	C	G	18: 37,065,511 (GRCm39)	P725R	probably benign	Het
Pcdha11	T	A	18: 37,145,849 (GRCm39)	L647M	probably damaging	Het
Phb2	T	C	6: 124,692,995 (GRCm39)		probably null	Het
Plb1	A	G	5: 32,483,610 (GRCm39)		probably null	Het
Pmch	T	A	10: 87,927,113 (GRCm39)	F39I	probably benign	Het
Psmd7	A	T	8: 108,307,920 (GRCm39)	S188T	possibly damaging	Het
Pycr2	T	A	1: 180,733,913 (GRCm39)	D168E	probably damaging	Het
Rab43	A	G	6: 87,771,692 (GRCm39)	Y96H	probably damaging	Het
Ralgapa2	C	T	2: 146,184,334 (GRCm39)	G1511S	probably benign	Het
Rb1cc1	T	A	1: 6,319,138 (GRCm39)	C852*	probably null	Het
Rexo2	T	C	9: 48,380,145 (GRCm39)	N229S	probably damaging	Het
Sema4f	A	G	6: 82,890,941 (GRCm39)	V622A	possibly damaging	Het
Serpina10	T	C	12: 103,594,806 (GRCm39)	S138G	probably benign	Het
Sptbn4	T	A	7: 27,061,059 (GRCm39)	T2415S	possibly damaging	Het
Tbc1d22b	A	G	17: 29,792,040 (GRCm39)	N257D	probably benign	Het
Tbl3	A	G	17: 24,921,205 (GRCm39)	F529L	probably damaging	Het
Them6	A	T	15: 74,593,427 (GRCm39)	N95I	probably benign	Het
Thrb	T	C	14: 18,008,608 (GRCm38)	S156P	possibly damaging	Het
Tmem186	G	A	16: 8,453,731 (GRCm39)	R177C	probably benign	Het
Ttn	T	A	2: 76,660,937 (GRCm39)		probably null	Het
Unc13a	T	A	8: 72,110,979 (GRCm39)	I411F	probably benign	Het
Uqcc1	T	C	2: 155,752,073 (GRCm39)		probably null	Het
Vmn1r56	T	C	7: 5,199,516 (GRCm39)	T34A	possibly damaging	Het
Vps39	A	T	2: 120,155,680 (GRCm39)	Y542*	probably null	Het
Wdr64	T	C	1: 175,556,542 (GRCm39)	L263P	probably damaging	Het
Wdr90	C	T	17: 26,065,300 (GRCm39)	R1652Q	probably damaging	Het
Wfdc16	A	G	2: 164,477,785 (GRCm39)	M88T	probably benign	Het
Wnk4	A	G	11: 101,160,403 (GRCm39)	D679G	probably damaging	Het
Ykt6	T	C	11: 5,912,751 (GRCm39)	I151T	probably benign	Het
Zbtb46	A	G	2: 181,033,225 (GRCm39)	C479R	probably damaging	Het
Zc3h7a	A	G	16: 10,967,115 (GRCm39)	I559T	probably benign	Het
Zfhx3	A	G	8: 109,678,283 (GRCm39)	N3111S	possibly damaging	Het
Zfp619	T	C	7: 39,184,432 (GRCm39)	V154A	possibly damaging	Het
Zfp629	A	T	7: 127,211,601 (GRCm39)	D69E	probably benign	Het
Zfp882	T	A	8: 72,668,073 (GRCm39)	I300N	possibly damaging	Het
Zfp934	T	C	13: 62,666,358 (GRCm39)	H106R	possibly damaging	Het
Zfta	T	C	19: 7,399,737 (GRCm39)	S495P	probably damaging	Het
Zfyve9	G	A	4: 108,576,298 (GRCm39)	T261I	possibly damaging	Het

Other mutations in Galntl6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00489:Galntl6	APN	8	58,310,574 (GRCm39)	missense	probably damaging	1.00
IGL00557:Galntl6	APN	8	59,364,451 (GRCm39)	missense	possibly damaging	0.71
IGL01140:Galntl6	APN	8	58,411,356 (GRCm39)	missense	probably damaging	1.00
IGL01412:Galntl6	APN	8	58,230,328 (GRCm39)	missense	probably damaging	0.99
IGL01458:Galntl6	APN	8	58,880,743 (GRCm39)	missense	probably damaging	1.00
IGL01575:Galntl6	APN	8	58,880,710 (GRCm39)	intron	probably benign
IGL01700:Galntl6	APN	8	58,411,494 (GRCm39)	splice site	probably benign
IGL01710:Galntl6	APN	8	58,989,002 (GRCm39)	missense	probably damaging	0.97
IGL02611:Galntl6	APN	8	58,411,450 (GRCm39)	missense	probably damaging	1.00
IGL02880:Galntl6	APN	8	58,257,306 (GRCm39)	missense	probably benign	0.44
IGL03129:Galntl6	APN	8	58,880,750 (GRCm39)	missense	probably damaging	1.00
IGL03215:Galntl6	APN	8	59,364,436 (GRCm39)	missense	probably benign	0.00
IGL03249:Galntl6	APN	8	58,230,210 (GRCm39)	utr 3 prime	probably benign
Fragilistic	UTSW	8	58,989,018 (GRCm39)	missense	probably benign
Indubitably	UTSW	8	58,880,804 (GRCm39)	missense	probably damaging	1.00
PIT4677001:Galntl6	UTSW	8	58,310,621 (GRCm39)	missense	probably damaging	1.00
R0600:Galntl6	UTSW	8	58,290,217 (GRCm39)	splice site	probably null
R0731:Galntl6	UTSW	8	58,989,018 (GRCm39)	missense	probably benign
R0961:Galntl6	UTSW	8	59,364,374 (GRCm39)	missense	probably benign
R1381:Galntl6	UTSW	8	58,925,989 (GRCm39)	missense	probably damaging	0.99
R2137:Galntl6	UTSW	8	58,988,939 (GRCm39)	critical splice donor site	probably null
R4632:Galntl6	UTSW	8	58,880,857 (GRCm39)	missense	probably damaging	1.00
R4731:Galntl6	UTSW	8	58,880,847 (GRCm39)	missense	probably damaging	1.00
R4732:Galntl6	UTSW	8	58,880,847 (GRCm39)	missense	probably damaging	1.00
R4733:Galntl6	UTSW	8	58,880,847 (GRCm39)	missense	probably damaging	1.00
R4920:Galntl6	UTSW	8	58,880,807 (GRCm39)	missense	probably damaging	0.97
R4964:Galntl6	UTSW	8	59,152,945 (GRCm39)	intron	probably benign
R5357:Galntl6	UTSW	8	58,337,497 (GRCm39)	missense	probably damaging	0.99
R5526:Galntl6	UTSW	8	58,926,004 (GRCm39)	missense	probably benign
R5951:Galntl6	UTSW	8	58,415,436 (GRCm39)	missense	probably benign	0.06
R5965:Galntl6	UTSW	8	58,310,565 (GRCm39)	missense	probably benign	0.03
R6260:Galntl6	UTSW	8	58,337,515 (GRCm39)	missense	probably damaging	1.00
R6368:Galntl6	UTSW	8	59,364,475 (GRCm39)	missense	probably damaging	1.00
R6695:Galntl6	UTSW	8	58,880,804 (GRCm39)	missense	probably damaging	1.00
R7593:Galntl6	UTSW	8	58,230,293 (GRCm39)	missense	probably damaging	1.00
R7833:Galntl6	UTSW	8	58,310,571 (GRCm39)	missense	probably benign
R7871:Galntl6	UTSW	8	58,290,222 (GRCm39)	missense	probably damaging	0.98
R8097:Galntl6	UTSW	8	58,415,407 (GRCm39)	splice site	probably null
R8891:Galntl6	UTSW	8	58,415,433 (GRCm39)	missense	probably damaging	1.00
R9177:Galntl6	UTSW	8	58,310,590 (GRCm39)	nonsense	probably null
R9196:Galntl6	UTSW	8	58,415,461 (GRCm39)	missense	probably damaging	1.00
R9384:Galntl6	UTSW	8	58,415,461 (GRCm39)	missense	probably damaging	1.00
R9454:Galntl6	UTSW	8	58,411,435 (GRCm39)	missense	probably damaging	0.99
R9474:Galntl6	UTSW	8	58,230,359 (GRCm39)	missense	probably damaging	0.99
R9482:Galntl6	UTSW	8	58,310,549 (GRCm39)	critical splice donor site	probably null
R9497:Galntl6	UTSW	8	58,290,410 (GRCm39)	missense	probably damaging	0.99
Z1176:Galntl6	UTSW	8	58,310,592 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TCCTTTTGTAATTGGCCAACAC -3'
(R):5'- TAGTACAGTGTGACCTGTGTTAGAG -3'

Sequencing Primer
(F):5'- GGCCAACACTTTTCTTCAATTGCAAC -3'
(R):5'- CAGTGTGACCTGTGTTAGAGTTTTAC -3'

Posted On

2019-11-26