Incidental Mutation 'R7782:Dennd4a'
ID 599312
Institutional Source Beutler Lab
Gene Symbol Dennd4a
Ensembl Gene ENSMUSG00000053641
Gene Name DENN/MADD domain containing 4A
Synonyms F730015K02Rik
MMRRC Submission 045838-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.432) question?
Stock # R7782 (G1)
Quality Score 225.009
Status Validated
Chromosome 9
Chromosomal Location 64811340-64919667 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 64906920 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 1473 (D1473G)
Ref Sequence ENSEMBL: ENSMUSP00000037915 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038890]
AlphaFold E9Q8V6
Predicted Effect probably damaging
Transcript: ENSMUST00000038890
AA Change: D1473G

PolyPhen 2 Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000037915
Gene: ENSMUSG00000053641
AA Change: D1473G

DomainStartEndE-ValueType
internal_repeat_1 45 93 3.26e-5 PROSPERO
uDENN 169 276 1.71e-28 SMART
DENN 309 493 2.4e-73 SMART
dDENN 559 633 4.15e-27 SMART
low complexity region 724 735 N/A INTRINSIC
low complexity region 936 950 N/A INTRINSIC
low complexity region 1176 1191 N/A INTRINSIC
low complexity region 1249 1262 N/A INTRINSIC
low complexity region 1402 1417 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.4%
Validation Efficiency 100% (80/80)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a DENN domain-containing protein that may function as a guanine nucleotide exchange factor that specifically activates ras-related protein Rab-10. This protein also contains a interferon stimulated response element-binding domain and may be involved in regulating the v-myc avian myelocytomatosis viral (MYC) oncogene. Alternate splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 8. [provided by RefSeq, Mar 2016]
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4931409K22Rik A G 5: 24,544,226 (GRCm38) L758P probably damaging Het
4933415A04Rik GTGTGTGTATGTGTGT GTGTGTGT 11: 43,587,412 (GRCm38) probably null Het
5430419D17Rik G A 7: 131,302,737 (GRCm38) probably null Het
Adamts16 A G 13: 70,836,146 (GRCm38) S133P probably damaging Het
Adamts17 T C 7: 67,125,054 (GRCm38) W1001R probably damaging Het
Aox4 T A 1: 58,231,092 (GRCm38) probably null Het
B4galnt4 C T 7: 141,065,075 (GRCm38) P221S probably damaging Het
BC005537 C T 13: 24,803,399 (GRCm38) R7W possibly damaging Het
BC034090 T C 1: 155,232,664 (GRCm38) probably benign Het
Best2 T A 8: 85,009,514 (GRCm38) D312V probably damaging Het
Bod1l A T 5: 41,817,943 (GRCm38) D2009E probably benign Het
Ccdc158 A C 5: 92,645,514 (GRCm38) S672A probably benign Het
Ccdc43 A T 11: 102,697,617 (GRCm38) L31Q probably damaging Het
Chaf1a T G 17: 56,062,291 (GRCm38) H507Q probably benign Het
Clptm1l A G 13: 73,604,320 (GRCm38) Y28C probably damaging Het
Cp G A 3: 19,975,059 (GRCm38) probably null Het
Crocc C T 4: 141,025,286 (GRCm38) A1432T probably benign Het
Crybg2 A G 4: 134,073,826 (GRCm38) T457A probably benign Het
Diaph3 A G 14: 87,037,504 (GRCm38) F172S probably benign Het
Dnajc5b A G 3: 19,574,842 (GRCm38) N100S probably benign Het
Dusp13 G A 14: 21,741,336 (GRCm38) T16I possibly damaging Het
Epb42 T G 2: 121,034,435 (GRCm38) K58N probably benign Het
Fam208a A G 14: 27,471,944 (GRCm38) T1034A probably benign Het
Fat1 A G 8: 44,950,911 (GRCm38) Y233C probably damaging Het
Fcgbp T A 7: 28,085,035 (GRCm38) Y173* probably null Het
Fign T A 2: 63,979,162 (GRCm38) D588V probably damaging Het
Fignl2 C T 15: 101,053,307 (GRCm38) V365M unknown Het
Fnip2 A C 3: 79,508,123 (GRCm38) Y203D probably benign Het
Ftsj3 CCTTCTTCTTCTTCTTCT CCTTCTTCTTCTTCT 11: 106,252,551 (GRCm38) probably benign Het
Gfral C A 9: 76,193,290 (GRCm38) V289L probably benign Het
Gm10031 C T 1: 156,524,982 (GRCm38) T251I probably damaging Het
Heatr5b G T 17: 78,795,941 (GRCm38) T1161K probably damaging Het
Hectd4 A T 5: 121,305,721 (GRCm38) I1335F possibly damaging Het
Hist2h2be T A 3: 96,221,171 (GRCm38) probably null Het
Htt T A 5: 34,882,992 (GRCm38) V2166D probably benign Het
Ipo5 G C 14: 120,933,125 (GRCm38) K436N possibly damaging Het
Itga6 A G 2: 71,841,535 (GRCm38) E794G probably damaging Het
Itga9 G A 9: 118,843,644 (GRCm38) C148Y Het
Kcnip2 A C 19: 45,797,085 (GRCm38) probably null Het
Kcnk6 T C 7: 29,225,844 (GRCm38) T116A possibly damaging Het
Kctd21 A G 7: 97,348,090 (GRCm38) I257V probably benign Het
Kif19a G A 11: 114,781,922 (GRCm38) R299Q probably damaging Het
Kifc2 G A 15: 76,664,128 (GRCm38) G391R probably benign Het
Klrg2 A G 6: 38,627,627 (GRCm38) V381A possibly damaging Het
Mob1b A G 5: 88,749,683 (GRCm38) probably null Het
Olfr1340 T C 4: 118,726,909 (GRCm38) Y221H probably damaging Het
Olfr1356 T C 10: 78,847,613 (GRCm38) I101V probably benign Het
Olfr790 T C 10: 129,501,151 (GRCm38) V81A probably benign Het
Olfr816 T G 10: 129,911,523 (GRCm38) S252R probably damaging Het
Oxsm C A 14: 16,240,925 (GRCm38) A375S possibly damaging Het
Pcdha3 T C 18: 36,948,140 (GRCm38) V645A probably damaging Het
Pcdhb15 T A 18: 37,474,735 (GRCm38) V340E possibly damaging Het
Pced1a G A 2: 130,422,515 (GRCm38) P132S probably damaging Het
Pla2r1 C T 2: 60,504,187 (GRCm38) V414M probably benign Het
Plekhg4 A C 8: 105,377,767 (GRCm38) I493L probably benign Het
Plekhj1 T A 10: 80,798,345 (GRCm38) probably benign Het
Pmfbp1 G T 8: 109,527,780 (GRCm38) K482N probably damaging Het
Ppil3 T C 1: 58,434,415 (GRCm38) N92S probably benign Het
Ppt2 A G 17: 34,625,712 (GRCm38) S156P probably benign Het
Prss41 A T 17: 23,837,113 (GRCm38) D255E probably benign Het
Psg25 T A 7: 18,521,302 (GRCm38) M430L probably benign Het
Rffl A T 11: 82,812,769 (GRCm38) C109* probably null Het
Rock2 A G 12: 16,971,110 (GRCm38) E991G probably benign Het
Rpap2 A G 5: 107,620,192 (GRCm38) I299V probably benign Het
Rras T C 7: 45,021,105 (GRCm38) S158P probably benign Het
Serpinb10 G A 1: 107,535,466 (GRCm38) probably benign Het
Smyd3 A T 1: 178,972,294 (GRCm38) I360N possibly damaging Het
Synm A G 7: 67,734,966 (GRCm38) S541P probably damaging Het
Tbc1d31 C A 15: 57,958,368 (GRCm38) T813K possibly damaging Het
Trav7n-4 A G 14: 53,091,646 (GRCm38) M38V probably benign Het
Tulp3 A C 6: 128,324,980 (GRCm38) N359K possibly damaging Het
Twf1 T C 15: 94,582,773 (GRCm38) K196E probably benign Het
Usp24 A T 4: 106,316,574 (GRCm38) N35Y probably damaging Het
Usp46 T A 5: 74,002,111 (GRCm38) E342D probably benign Het
Vps50 T A 6: 3,532,202 (GRCm38) probably null Het
Vps8 T A 16: 21,511,558 (GRCm38) I727N possibly damaging Het
Wdr90 C T 17: 25,846,326 (GRCm38) R1652Q probably damaging Het
Zfp11 A T 5: 129,656,963 (GRCm38) V478E possibly damaging Het
Zfp493 A G 13: 67,787,004 (GRCm38) K359E probably benign Het
Zfp536 T C 7: 37,568,701 (GRCm38) Y430C probably damaging Het
Zfpm1 A G 8: 122,336,950 (GRCm38) D916G unknown Het
Other mutations in Dennd4a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00476:Dennd4a APN 9 64,911,762 (GRCm38) missense probably damaging 1.00
IGL01610:Dennd4a APN 9 64,906,884 (GRCm38) missense probably damaging 0.99
IGL01788:Dennd4a APN 9 64,842,621 (GRCm38) missense probably benign 0.00
IGL01827:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01828:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01829:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01979:Dennd4a APN 9 64,894,409 (GRCm38) missense probably benign 0.00
IGL02100:Dennd4a APN 9 64,909,706 (GRCm38) splice site probably benign
IGL02339:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL02341:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL02584:Dennd4a APN 9 64,851,298 (GRCm38) missense probably damaging 1.00
IGL02607:Dennd4a APN 9 64,862,327 (GRCm38) missense probably damaging 0.99
IGL02654:Dennd4a APN 9 64,910,191 (GRCm38) splice site probably benign
IGL02701:Dennd4a APN 9 64,897,353 (GRCm38) missense possibly damaging 0.50
IGL03051:Dennd4a APN 9 64,862,414 (GRCm38) missense probably damaging 1.00
IGL03257:Dennd4a APN 9 64,871,874 (GRCm38) missense possibly damaging 0.93
IGL03346:Dennd4a APN 9 64,888,526 (GRCm38) missense possibly damaging 0.47
IGL03349:Dennd4a APN 9 64,888,974 (GRCm38) missense probably damaging 1.00
IGL03398:Dennd4a APN 9 64,871,882 (GRCm38) missense probably benign 0.32
R0010:Dennd4a UTSW 9 64,896,715 (GRCm38) missense probably benign 0.00
R0010:Dennd4a UTSW 9 64,896,715 (GRCm38) missense probably benign 0.00
R0129:Dennd4a UTSW 9 64,893,294 (GRCm38) missense probably damaging 1.00
R0220:Dennd4a UTSW 9 64,852,445 (GRCm38) missense probably damaging 1.00
R0396:Dennd4a UTSW 9 64,862,391 (GRCm38) missense probably damaging 1.00
R0881:Dennd4a UTSW 9 64,851,383 (GRCm38) critical splice donor site probably null
R1225:Dennd4a UTSW 9 64,911,675 (GRCm38) missense probably benign 0.03
R1311:Dennd4a UTSW 9 64,910,004 (GRCm38) missense probably benign 0.34
R1448:Dennd4a UTSW 9 64,906,045 (GRCm38) missense possibly damaging 0.95
R1450:Dennd4a UTSW 9 64,911,665 (GRCm38) missense probably benign 0.03
R1630:Dennd4a UTSW 9 64,871,882 (GRCm38) missense probably benign 0.32
R1709:Dennd4a UTSW 9 64,889,605 (GRCm38) missense possibly damaging 0.92
R1824:Dennd4a UTSW 9 64,859,358 (GRCm38) critical splice donor site probably null
R1851:Dennd4a UTSW 9 64,862,030 (GRCm38) missense probably damaging 1.00
R1870:Dennd4a UTSW 9 64,897,234 (GRCm38) missense probably benign 0.00
R1900:Dennd4a UTSW 9 64,897,336 (GRCm38) missense probably damaging 0.99
R1911:Dennd4a UTSW 9 64,889,086 (GRCm38) missense probably damaging 1.00
R1938:Dennd4a UTSW 9 64,842,490 (GRCm38) missense probably damaging 1.00
R1954:Dennd4a UTSW 9 64,852,467 (GRCm38) missense probably benign 0.02
R1955:Dennd4a UTSW 9 64,852,467 (GRCm38) missense probably benign 0.02
R2049:Dennd4a UTSW 9 64,889,605 (GRCm38) missense possibly damaging 0.92
R2129:Dennd4a UTSW 9 64,905,974 (GRCm38) splice site probably null
R2138:Dennd4a UTSW 9 64,889,337 (GRCm38) missense probably damaging 1.00
R2929:Dennd4a UTSW 9 64,852,417 (GRCm38) missense possibly damaging 0.85
R3083:Dennd4a UTSW 9 64,906,081 (GRCm38) missense probably benign 0.03
R3108:Dennd4a UTSW 9 64,912,387 (GRCm38) missense probably benign 0.23
R3176:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3177:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3276:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3277:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3890:Dennd4a UTSW 9 64,872,028 (GRCm38) missense probably damaging 1.00
R3953:Dennd4a UTSW 9 64,852,575 (GRCm38) missense probably damaging 1.00
R3963:Dennd4a UTSW 9 64,862,331 (GRCm38) missense probably damaging 1.00
R4059:Dennd4a UTSW 9 64,911,892 (GRCm38) missense possibly damaging 0.92
R4499:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4500:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4501:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4671:Dennd4a UTSW 9 64,894,407 (GRCm38) missense probably benign
R4701:Dennd4a UTSW 9 64,897,357 (GRCm38) missense possibly damaging 0.91
R4821:Dennd4a UTSW 9 64,897,249 (GRCm38) missense possibly damaging 0.92
R4829:Dennd4a UTSW 9 64,889,056 (GRCm38) missense probably damaging 1.00
R4876:Dennd4a UTSW 9 64,896,590 (GRCm38) missense probably benign
R4881:Dennd4a UTSW 9 64,838,844 (GRCm38) missense possibly damaging 0.77
R4962:Dennd4a UTSW 9 64,906,003 (GRCm38) missense probably benign 0.00
R5225:Dennd4a UTSW 9 64,888,928 (GRCm38) missense possibly damaging 0.94
R5557:Dennd4a UTSW 9 64,904,227 (GRCm38) missense probably benign 0.07
R5649:Dennd4a UTSW 9 64,851,209 (GRCm38) splice site probably null
R5868:Dennd4a UTSW 9 64,896,729 (GRCm38) missense probably benign 0.02
R5876:Dennd4a UTSW 9 64,911,755 (GRCm38) missense probably damaging 1.00
R6052:Dennd4a UTSW 9 64,886,945 (GRCm38) missense probably damaging 1.00
R6411:Dennd4a UTSW 9 64,871,899 (GRCm38) missense probably benign 0.04
R6596:Dennd4a UTSW 9 64,852,420 (GRCm38) missense probably damaging 1.00
R6668:Dennd4a UTSW 9 64,886,965 (GRCm38) missense probably damaging 1.00
R6915:Dennd4a UTSW 9 64,852,489 (GRCm38) nonsense probably null
R7056:Dennd4a UTSW 9 64,906,923 (GRCm38) missense possibly damaging 0.89
R7107:Dennd4a UTSW 9 64,894,399 (GRCm38) missense possibly damaging 0.79
R7203:Dennd4a UTSW 9 64,896,474 (GRCm38) missense probably benign 0.05
R7238:Dennd4a UTSW 9 64,861,956 (GRCm38) missense probably damaging 1.00
R7373:Dennd4a UTSW 9 64,897,269 (GRCm38) missense probably benign 0.01
R7454:Dennd4a UTSW 9 64,852,570 (GRCm38) missense probably damaging 1.00
R7546:Dennd4a UTSW 9 64,873,044 (GRCm38) missense probably damaging 1.00
R7590:Dennd4a UTSW 9 64,888,587 (GRCm38) missense probably benign 0.01
R7662:Dennd4a UTSW 9 64,852,431 (GRCm38) missense probably damaging 1.00
R7909:Dennd4a UTSW 9 64,872,993 (GRCm38) critical splice acceptor site probably null
R7976:Dennd4a UTSW 9 64,852,512 (GRCm38) missense possibly damaging 0.95
R8026:Dennd4a UTSW 9 64,873,030 (GRCm38) missense probably damaging 1.00
R8034:Dennd4a UTSW 9 64,888,568 (GRCm38) missense probably benign 0.01
R8089:Dennd4a UTSW 9 64,849,175 (GRCm38) missense probably damaging 1.00
R8298:Dennd4a UTSW 9 64,906,875 (GRCm38) missense probably benign 0.00
R8397:Dennd4a UTSW 9 64,889,109 (GRCm38) missense probably benign
R8425:Dennd4a UTSW 9 64,838,974 (GRCm38) missense probably damaging 1.00
R8495:Dennd4a UTSW 9 64,886,879 (GRCm38) missense probably damaging 1.00
R8855:Dennd4a UTSW 9 64,912,390 (GRCm38) missense probably benign
R9219:Dennd4a UTSW 9 64,889,094 (GRCm38) missense probably damaging 0.96
R9275:Dennd4a UTSW 9 64,842,624 (GRCm38) missense probably damaging 1.00
R9376:Dennd4a UTSW 9 64,912,692 (GRCm38) missense probably benign 0.00
R9485:Dennd4a UTSW 9 64,907,106 (GRCm38) nonsense probably null
R9672:Dennd4a UTSW 9 64,893,358 (GRCm38) missense probably benign
R9746:Dennd4a UTSW 9 64,894,511 (GRCm38) missense probably benign
X0026:Dennd4a UTSW 9 64,897,320 (GRCm38) missense possibly damaging 0.67
Z1088:Dennd4a UTSW 9 64,872,022 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CATGTGGCTGTATTTGCTCAGATC -3'
(R):5'- CTGTTGATGAGCTGGACTTCAAG -3'

Sequencing Primer
(F):5'- GCTCAGATCTTTTGATTATTGCCATG -3'
(R):5'- GATGAGCTGGACTTCAAGAAATATC -3'
Posted On 2019-11-26