Mutagenetix > Incidental Mutation

Incidental Mutation 'R7789:Tdrd12'

599735

Institutional Source

Beutler Lab

Gene Symbol

Tdrd12

Ensembl Gene

ENSMUSG00000030491

Gene Name

tudor domain containing 12

Synonyms

EG434165, 2410004F06Rik, ecat8, repro23, G1-476-14, 2410070K17Rik

MMRRC Submission

045845-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.141) question?

Stock #

R7789 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

35168523-35237170 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 35188117 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 562 (L562P)

Ref Sequence

ENSEMBL: ENSMUSP00000141796 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032701] [ENSMUST00000187190] [ENSMUST00000193633] [ENSMUST00000205407] [ENSMUST00000206641]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000032701

SMART Domains

Protein: ENSMUSP00000032701
Gene: ENSMUSG00000030491

Domain	Start	End	E-Value	Type
Pfam:TUDOR	1	129	4e-27	PFAM

Predicted Effect

SMART Domains

Protein: ENSMUSP00000140328
Gene: ENSMUSG00000030491
AA Change: L537P

Domain	Start	End	E-Value	Type
Pfam:TUDOR	1	129	5.1e-24	PFAM
Pfam:DEAD	276	581	1.8e-6	PFAM
Pfam:TUDOR	852	973	4.9e-7	PFAM

Predicted Effect

SMART Domains

Protein: ENSMUSP00000141796
Gene: ENSMUSG00000030491
AA Change: L562P

Domain	Start	End	E-Value	Type
Pfam:TUDOR	1	129	2.7e-24	PFAM
Pfam:DEAD	273	606	7.6e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000205407

Predicted Effect

probably benign
Transcript: ENSMUST00000206641

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.5%

Validation Efficiency

99% (77/78)

MGI Phenotype

PHENOTYPE: Homozygous males are infertile with small testes. Spermatogenesis is arrested predominantly at the pachytene spermatocyte stage. Retrotransposon hopping is derepressed in germ cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930562C15Rik	G	A	16: 4,682,175 (GRCm39)	E163K	probably benign	Het
Adam34	T	A	8: 44,105,488 (GRCm39)	R52S	probably benign	Het
Adcy8	A	T	15: 64,743,623 (GRCm39)	C328*	probably null	Het
Ankrd26	G	T	6: 118,504,760 (GRCm39)	S716R	possibly damaging	Het
Ankrd26	G	T	6: 118,504,759 (GRCm39)	H717N	probably damaging	Het
Ankrd40	C	A	11: 94,225,535 (GRCm39)	P189T	probably damaging	Het
Anln	A	G	9: 22,263,333 (GRCm39)	S113P		Het
Arid5b	C	T	10: 67,934,417 (GRCm39)	G495E	probably benign	Het
Asxl1	C	T	2: 153,241,943 (GRCm39)	T832I	probably benign	Het
Bicd2	C	T	13: 49,533,135 (GRCm39)	R574C	probably damaging	Het
Boll	T	C	1: 55,399,826 (GRCm39)		probably null	Het
Casr	A	G	16: 36,315,653 (GRCm39)	F806L	probably damaging	Het
Casz1	C	A	4: 149,013,863 (GRCm39)	N142K	probably benign	Het
Cbl	C	T	9: 44,074,764 (GRCm39)	D433N	probably damaging	Het
Ceacam14	T	A	7: 17,548,096 (GRCm39)	V62D	probably damaging	Het
Chst10	T	C	1: 38,923,532 (GRCm39)	N18S	probably benign	Het
Cyp2j6	C	T	4: 96,433,953 (GRCm39)	R119H	probably benign	Het
Cyp4a14	C	G	4: 115,352,107 (GRCm39)	V102L	probably benign	Het
Dnajb3	A	T	1: 88,133,399 (GRCm39)	M1K	probably null	Het
Dnajc6	A	T	4: 101,475,729 (GRCm39)	K534M	possibly damaging	Het
Dnase2a	T	C	8: 85,635,505 (GRCm39)		probably null	Het
Dock10	A	G	1: 80,536,930 (GRCm39)	I985T	possibly damaging	Het
Emsy	G	T	7: 98,270,696 (GRCm39)	P436Q	probably damaging	Het
Enpp1	A	T	10: 24,529,981 (GRCm39)		probably null	Het
Erc1	T	A	6: 119,750,670 (GRCm39)	R353*	probably null	Het
Fbn2	T	A	18: 58,172,385 (GRCm39)	D2140V	probably benign	Het
Fgfr1	T	A	8: 26,052,329 (GRCm39)	Y218*	probably null	Het
Fhod1	C	T	8: 106,056,740 (GRCm39)	R1045H	probably damaging	Het
Focad	G	T	4: 88,147,643 (GRCm39)	L427F	unknown	Het
Gbf1	T	A	19: 46,242,441 (GRCm39)	L144M	probably damaging	Het
Glmn	T	G	5: 107,696,941 (GRCm39)	N592T	probably benign	Het
Golgb1	C	G	16: 36,695,761 (GRCm39)	P87A	unknown	Het
H2bw2	G	A	X: 135,828,471 (GRCm39)	R120K	unknown	Het
Insyn2b	T	A	11: 34,352,537 (GRCm39)	M193K	probably benign	Het
Itga9	T	G	9: 118,487,564 (GRCm39)	F216V	possibly damaging	Het
Klhl18	T	C	9: 110,268,076 (GRCm39)	D149G	unknown	Het
Lcat	C	T	8: 106,668,857 (GRCm39)	V114M	probably benign	Het
Lrrc8c	C	A	5: 105,755,066 (GRCm39)	N280K	probably damaging	Het
Mettl8	T	C	2: 70,796,806 (GRCm39)	Y283C	probably damaging	Het
Mgat4a	A	T	1: 37,529,360 (GRCm39)	I173K	probably damaging	Het
Mmp1a	T	C	9: 7,475,266 (GRCm39)	V345A	possibly damaging	Het
Mok	T	A	12: 110,778,261 (GRCm39)	H215L	probably damaging	Het
Mphosph9	C	G	5: 124,453,650 (GRCm39)	E221Q	probably damaging	Het
Muc4	C	G	16: 32,575,221 (GRCm39)	Q1269E	probably benign	Het
Mug1	C	A	6: 121,838,179 (GRCm39)	H470N	possibly damaging	Het
Myom1	A	G	17: 71,424,431 (GRCm39)	T1525A	probably benign	Het
Nap1l1	C	T	10: 111,326,317 (GRCm39)	S143L	probably benign	Het
Or1af1	C	T	2: 37,109,672 (GRCm39)	T57I	probably benign	Het
Or2j6	A	T	7: 139,980,610 (GRCm39)	Y116*	probably null	Het
Or52d1	T	A	7: 103,756,195 (GRCm39)	S236R	probably damaging	Het
Or7g29	G	T	9: 19,286,361 (GRCm39)	T272K	probably benign	Het
Plbd2	T	C	5: 120,623,819 (GRCm39)	S568G	probably damaging	Het
Plxna4	T	A	6: 32,183,168 (GRCm39)		probably null	Het
Plxnc1	T	A	10: 94,630,339 (GRCm39)	E1520V	probably damaging	Het
Ppil3	G	A	1: 58,473,538 (GRCm39)	T104I	possibly damaging	Het
Ptprm	A	T	17: 67,402,534 (GRCm39)	V118E	probably damaging	Het
Rimbp2	T	C	5: 128,851,399 (GRCm39)	D849G	probably damaging	Het
Rnf213	T	C	11: 119,361,045 (GRCm39)		probably null	Het
Sema3f	T	A	9: 107,582,631 (GRCm39)	K37N	probably benign	Het
Sh3glb1	G	T	3: 144,397,892 (GRCm39)		probably null	Het
Sh3rf3	A	G	10: 58,922,637 (GRCm39)	D571G	probably benign	Het
Sipa1l3	T	C	7: 29,077,150 (GRCm39)	Y874C	probably damaging	Het
Smchd1	G	A	17: 71,782,296 (GRCm39)		probably benign	Het
Snrnp70	A	T	7: 45,026,045 (GRCm39)	Y441*	probably null	Het
Ssrp1	C	T	2: 84,871,525 (GRCm39)	R316W	probably damaging	Het
Syt10	A	T	15: 89,711,101 (GRCm39)	V144E	probably damaging	Het
Trim68	T	C	7: 102,333,676 (GRCm39)	D2G	possibly damaging	Het
Trub2	T	A	2: 29,667,920 (GRCm39)	H240L	probably damaging	Het
Tssc4	A	G	7: 142,623,515 (GRCm39)		probably null	Het
Usp7	T	A	16: 8,516,675 (GRCm39)	Q539L	probably benign	Het
Vmn2r17	T	A	5: 109,600,831 (GRCm39)	C710S	possibly damaging	Het
Vmn2r99	G	T	17: 19,614,079 (GRCm39)	V600F	possibly damaging	Het
Vps13d	C	T	4: 144,826,635 (GRCm39)	V2879M		Het
Vrtn	T	A	12: 84,697,080 (GRCm39)	M610K	probably benign	Het
Xpo4	T	C	14: 57,850,806 (GRCm39)	E366G	probably benign	Het
Zyg11a	G	A	4: 108,040,845 (GRCm39)	P703S	probably damaging	Het

Other mutations in Tdrd12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01330:Tdrd12	APN	7	35,204,459 (GRCm39)	missense	possibly damaging	0.95
IGL01879:Tdrd12	APN	7	35,221,348 (GRCm39)	missense	probably damaging	1.00
IGL02026:Tdrd12	APN	7	35,203,658 (GRCm39)	splice site	probably benign
IGL02186:Tdrd12	APN	7	35,200,826 (GRCm39)	missense	probably damaging	0.99
PIT4131001:Tdrd12	UTSW	7	35,180,528 (GRCm39)	nonsense	probably null
R0071:Tdrd12	UTSW	7	35,228,671 (GRCm39)	missense	possibly damaging	0.92
R0071:Tdrd12	UTSW	7	35,228,671 (GRCm39)	missense	possibly damaging	0.92
R0098:Tdrd12	UTSW	7	35,175,418 (GRCm39)	missense	probably damaging	1.00
R0366:Tdrd12	UTSW	7	35,208,227 (GRCm39)	missense	probably benign	0.25
R2050:Tdrd12	UTSW	7	35,228,672 (GRCm39)	missense	probably damaging	0.98
R2851:Tdrd12	UTSW	7	35,184,798 (GRCm39)	missense	probably damaging	1.00
R3715:Tdrd12	UTSW	7	35,204,405 (GRCm39)	missense	probably benign	0.05
R3859:Tdrd12	UTSW	7	35,193,245 (GRCm39)	missense	possibly damaging	0.50
R3912:Tdrd12	UTSW	7	35,187,138 (GRCm39)	missense	probably damaging	1.00
R4656:Tdrd12	UTSW	7	35,184,679 (GRCm39)	missense	probably damaging	1.00
R4826:Tdrd12	UTSW	7	35,203,582 (GRCm39)	missense	probably benign	0.00
R4969:Tdrd12	UTSW	7	35,186,720 (GRCm39)	splice site	probably null
R5202:Tdrd12	UTSW	7	35,189,455 (GRCm39)	missense	possibly damaging	0.49
R5321:Tdrd12	UTSW	7	35,177,519 (GRCm39)	missense	probably damaging	1.00
R5642:Tdrd12	UTSW	7	35,210,725 (GRCm39)	missense	probably damaging	0.99
R5709:Tdrd12	UTSW	7	35,175,478 (GRCm39)	missense	probably damaging	1.00
R5835:Tdrd12	UTSW	7	35,228,689 (GRCm39)	missense	probably damaging	1.00
R6029:Tdrd12	UTSW	7	35,184,655 (GRCm39)	missense	probably damaging	0.98
R6101:Tdrd12	UTSW	7	35,180,558 (GRCm39)	nonsense	probably null
R6341:Tdrd12	UTSW	7	35,189,473 (GRCm39)	missense	probably damaging	1.00
R6631:Tdrd12	UTSW	7	35,184,654 (GRCm39)	missense	probably damaging	0.99
R6939:Tdrd12	UTSW	7	35,185,024 (GRCm39)	critical splice donor site	probably null
R7032:Tdrd12	UTSW	7	35,180,471 (GRCm39)	nonsense	probably null
R7058:Tdrd12	UTSW	7	35,177,534 (GRCm39)	missense	unknown
R7096:Tdrd12	UTSW	7	35,187,014 (GRCm39)	missense
R7203:Tdrd12	UTSW	7	35,188,648 (GRCm39)	nonsense	probably null
R7229:Tdrd12	UTSW	7	35,179,705 (GRCm39)	missense	unknown
R7265:Tdrd12	UTSW	7	35,187,147 (GRCm39)	missense
R7284:Tdrd12	UTSW	7	35,179,561 (GRCm39)	splice site	probably null
R7347:Tdrd12	UTSW	7	35,185,117 (GRCm39)	missense
R7501:Tdrd12	UTSW	7	35,177,516 (GRCm39)	missense	unknown
R8374:Tdrd12	UTSW	7	35,177,486 (GRCm39)	missense	unknown
R8379:Tdrd12	UTSW	7	35,223,482 (GRCm39)	nonsense	probably null
R8798:Tdrd12	UTSW	7	35,228,605 (GRCm39)	missense	probably damaging	1.00
R9053:Tdrd12	UTSW	7	35,204,468 (GRCm39)	missense	probably damaging	1.00
R9062:Tdrd12	UTSW	7	35,179,694 (GRCm39)	missense	unknown
R9491:Tdrd12	UTSW	7	35,188,689 (GRCm39)	missense
R9745:Tdrd12	UTSW	7	35,185,964 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- GTTCCTAGCATGCACAAGGC -3'
(R):5'- ACCCAGTAGAAAATGGCTGCTG -3'

Sequencing Primer
(F):5'- CATGCTACAGAATAGTATGGCAC -3'
(R):5'- CTGCTGAGAAGGAAGTGGAATCATG -3'

Posted On

2019-11-26