Mutagenetix > Incidental Mutation

Incidental Mutation 'R7817:Timd2'

601598

Institutional Source

Beutler Lab

Gene Symbol

Timd2

Ensembl Gene

ENSMUSG00000040413

Gene Name

T cell immunoglobulin and mucin domain containing 2

Synonyms

TIM-2, Tim2

MMRRC Submission

045871-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.075) question?

Stock #

R7817 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

46559787-46597888 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 46561781 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Serine at position 288 (C288S)

Ref Sequence

ENSEMBL: ENSMUSP00000131540 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055102] [ENSMUST00000109225] [ENSMUST00000169584]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000055102
AA Change: C288S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000060891
Gene: ENSMUSG00000040413
AA Change: C288S

Domain	Start	End	E-Value	Type
IG	22	127	7.08e-4	SMART
low complexity region	131	146	N/A	INTRINSIC
low complexity region	148	167	N/A	INTRINSIC
transmembrane domain	231	253	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000109225
AA Change: C288S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000104848
Gene: ENSMUSG00000040413
AA Change: C288S

Domain	Start	End	E-Value	Type
IG	22	127	7.08e-4	SMART
low complexity region	131	146	N/A	INTRINSIC
low complexity region	148	167	N/A	INTRINSIC
transmembrane domain	231	253	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000169584
AA Change: C288S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000131540
Gene: ENSMUSG00000040413
AA Change: C288S

Domain	Start	End	E-Value	Type
IG	22	127	7.08e-4	SMART
low complexity region	131	146	N/A	INTRINSIC
low complexity region	148	167	N/A	INTRINSIC
transmembrane domain	231	253	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

96% (45/47)

MGI Phenotype

PHENOTYPE: Mice homozygous for a null allele exhibit an exacerbated inflammatory response. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts17	T	C	7: 66,559,224 (GRCm39)	V338A	probably damaging	Het
Akap13	G	A	7: 75,380,213 (GRCm39)	R462H	probably damaging	Het
BC005537	C	T	13: 24,987,382 (GRCm39)	R7W	possibly damaging	Het
Bivm	G	T	1: 44,165,561 (GRCm39)	A4S	probably benign	Het
Cacng3	G	A	7: 122,367,822 (GRCm39)	R234Q	probably damaging	Het
Card6	TTGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGCGGATGAGAGGGCTTAGCATGGGAGGACTG	TTGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGTGGATGAGAGGGCTTAGCATGGGAGGACTGCGGATGAGAGGGCTTAGCATGGGAGGACTG	15: 5,128,173 (GRCm39)		probably benign	Het
Cftr	A	G	6: 18,267,967 (GRCm39)	D642G	probably damaging	Het
Cltc	A	G	11: 86,615,949 (GRCm39)	V443A	probably damaging	Het
Csmd3	C	T	15: 47,721,356 (GRCm39)	R1425H	probably damaging	Het
Cttnbp2	G	C	6: 18,426,092 (GRCm39)	A762G	possibly damaging	Het
Dscam	T	C	16: 96,442,064 (GRCm39)	T1588A	probably benign	Het
Gabra4	A	G	5: 71,798,206 (GRCm39)	M207T	probably damaging	Het
Galnt3	A	G	2: 65,926,243 (GRCm39)	Y322H	probably damaging	Het
Glud1	A	T	14: 34,051,244 (GRCm39)		probably null	Het
Gm47189	A	G	14: 41,492,011 (GRCm39)	Y89H	probably damaging	Het
Klhl1	A	T	14: 96,374,186 (GRCm39)	M620K	possibly damaging	Het
Krt9	TCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCC	TCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCC	11: 100,079,903 (GRCm39)		probably benign	Het
Mocs2	A	G	13: 114,957,382 (GRCm39)	E62G	probably damaging	Het
Myh7	C	G	14: 55,226,258 (GRCm39)	D461H	probably damaging	Het
Nek10	C	T	14: 15,001,017 (GRCm38)	P1066S	probably benign	Het
Nfxl1	T	C	5: 72,671,632 (GRCm39)	K876E	possibly damaging	Het
Nipsnap3a	T	A	4: 52,997,279 (GRCm39)	F182I	probably damaging	Het
Nlrc3	C	T	16: 3,783,327 (GRCm39)	G60S	possibly damaging	Het
Notch2	T	C	3: 98,014,443 (GRCm39)	Y666H	probably damaging	Het
Or9m1b	T	C	2: 87,836,355 (GRCm39)	I247V	probably benign	Het
Pars2	T	A	4: 106,511,276 (GRCm39)	Y353N	probably damaging	Het
Pcdhb11	A	G	18: 37,556,962 (GRCm39)	E764G	probably damaging	Het
Pcdhb3	T	A	18: 37,435,982 (GRCm39)	D649E	probably benign	Het
Pde7b	T	G	10: 20,319,051 (GRCm39)	R90S	probably damaging	Het
Pik3r5	T	C	11: 68,384,483 (GRCm39)	V625A	probably damaging	Het
Prdm9	G	A	17: 15,779,311 (GRCm39)	R113W	probably damaging	Het
Psg26	A	G	7: 18,216,572 (GRCm39)	V89A	not run	Het
Rad1	T	C	15: 10,493,404 (GRCm39)	V277A	probably benign	Het
Rb1	A	T	14: 73,435,983 (GRCm39)	L894Q	probably damaging	Het
Rorb	A	T	19: 18,965,460 (GRCm39)	C10S	probably damaging	Het
Ryk	C	T	9: 102,768,432 (GRCm39)	Q361*	probably null	Het
Serpina3b	A	G	12: 104,099,223 (GRCm39)	N246S	probably benign	Het
Srr	A	G	11: 74,799,524 (GRCm39)	V317A	possibly damaging	Het
Tomm70a	C	T	16: 56,965,136 (GRCm39)	A440V	probably damaging	Het
Trim62	T	C	4: 128,794,478 (GRCm39)	V215A	probably benign	Het
Trio	C	G	15: 27,749,952 (GRCm39)	V2250L	probably benign	Het
Ubr5	G	A	15: 37,980,076 (GRCm39)	A2434V	probably null	Het
Unc13d	A	T	11: 115,967,109 (GRCm39)	V91D	probably damaging	Het
Vmn1r159	T	A	7: 22,542,487 (GRCm39)	I182F	possibly damaging	Het
Vmn1r230	T	A	17: 21,066,823 (GRCm39)	V4D	probably benign	Het
Zfp27	T	C	7: 29,595,815 (GRCm39)	Y50C	possibly damaging	Het
Zfp354c	TCACACTCGGCACA	TCACA	11: 50,706,067 (GRCm39)		probably benign	Het
Zfp518b	T	C	5: 38,829,741 (GRCm39)	I755V	not run	Het

Other mutations in Timd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01015:Timd2	APN	11	46,567,170 (GRCm39)	missense	probably benign	0.15
IGL01289:Timd2	APN	11	46,570,499 (GRCm39)	missense	probably benign	0.00
IGL02066:Timd2	APN	11	46,569,050 (GRCm39)	missense	probably damaging	0.98
IGL02439:Timd2	APN	11	46,569,063 (GRCm39)	splice site	probably benign
R2217:Timd2	UTSW	11	46,577,844 (GRCm39)	missense	probably damaging	1.00
R2218:Timd2	UTSW	11	46,577,844 (GRCm39)	missense	probably damaging	1.00
R2240:Timd2	UTSW	11	46,569,043 (GRCm39)	missense	probably benign	0.01
R3621:Timd2	UTSW	11	46,569,040 (GRCm39)	missense	probably benign	0.00
R3876:Timd2	UTSW	11	46,561,847 (GRCm39)	critical splice acceptor site	probably null
R4173:Timd2	UTSW	11	46,561,787 (GRCm39)	missense	probably benign	0.00
R4793:Timd2	UTSW	11	46,578,008 (GRCm39)	missense	probably damaging	1.00
R4799:Timd2	UTSW	11	46,568,094 (GRCm39)	nonsense	probably null
R4963:Timd2	UTSW	11	46,573,617 (GRCm39)	missense	possibly damaging	0.66
R5314:Timd2	UTSW	11	46,568,087 (GRCm39)	missense	probably benign	0.09
R5798:Timd2	UTSW	11	46,568,064 (GRCm39)	missense	probably benign	0.06
R6074:Timd2	UTSW	11	46,577,999 (GRCm39)	missense	possibly damaging	0.88
R6090:Timd2	UTSW	11	46,578,063 (GRCm39)	missense	probably benign	0.11
R6694:Timd2	UTSW	11	46,561,779 (GRCm39)	nonsense	probably null
R8379:Timd2	UTSW	11	46,568,027 (GRCm39)	splice site	probably null
R9321:Timd2	UTSW	11	46,577,916 (GRCm39)	missense	probably benign	0.00
R9483:Timd2	UTSW	11	46,577,889 (GRCm39)	missense	probably damaging	1.00
R9763:Timd2	UTSW	11	46,573,540 (GRCm39)	missense	probably benign	0.01
Z1177:Timd2	UTSW	11	46,570,506 (GRCm39)	missense	probably benign	0.26

Predicted Primers

PCR Primer
(F):5'- TGTACACAGTAGAGGGTTACCC -3'
(R):5'- ACTTAATACTGAGGGCCTGTG -3'

Sequencing Primer
(F):5'- CTCTCCACTACAGCTGGAAG -3'
(R):5'- AGGGCCTGTGTGGAACTATTCAC -3'

Posted On

2019-12-03