Mutagenetix > Incidental Mutations

Incidental Mutation 'IGL01025:Nlrp3'

60234

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Nlrp3

Ensembl Gene

ENSMUSG00000032691

Gene Name

NLR family, pyrin domain containing 3

Synonyms

Cias1, cryopyrin, Pypaf1, NALP3, Mmig1

Accession Numbers

Ncbi RefSeq: NM_145827.3; MGI:2653833

Is this an essential gene?

Probably non essential (E-score: 0.077) question?

Stock #

IGL01025

Quality Score

Status

Chromosome

Chromosomal Location

59541568-59566956 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 59551887 bp

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 755 (M755K)

Ref Sequence

ENSEMBL: ENSMUSP00000098707 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079476] [ENSMUST00000101148] [ENSMUST00000149126]

Predicted Effect

probably benign
Transcript: ENSMUST00000079476
AA Change: M755K

PolyPhen 2 Score 0.209 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000078440
Gene: ENSMUSG00000032691
AA Change: M755K

Domain	Start	End	E-Value	Type
PYRIN	4	87	6.39e-33	SMART
FISNA	135	206	1.45e-22	SMART
Pfam:NACHT	216	385	6.7e-52	PFAM
low complexity region	533	539	N/A	INTRINSIC
low complexity region	688	697	N/A	INTRINSIC
LRR_RI	737	764	1.07e-9	SMART
LRR	766	793	5.13e1	SMART
LRR	794	821	3.86e-7	SMART
LRR	823	850	1.62e0	SMART
LRR	851	878	3.39e-3	SMART
LRR	880	907	1.2e2	SMART
LRR	908	935	2.24e-3	SMART
LRR	937	964	2.16e2	SMART
LRR	965	992	8.73e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000101148
AA Change: M755K

PolyPhen 2 Score 0.209 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000098707
Gene: ENSMUSG00000032691
AA Change: M755K

Domain	Start	End	E-Value	Type
PYRIN	4	87	6.39e-33	SMART
FISNA	135	206	1.45e-22	SMART
Pfam:NACHT	216	385	6.7e-52	PFAM
low complexity region	533	539	N/A	INTRINSIC
low complexity region	688	697	N/A	INTRINSIC
LRR_RI	737	764	1.07e-9	SMART
LRR	766	793	5.13e1	SMART
LRR	794	821	3.86e-7	SMART
LRR	823	850	1.62e0	SMART
LRR	851	878	3.39e-3	SMART
LRR	880	907	1.2e2	SMART
LRR	908	935	2.24e-3	SMART
LRR	937	964	2.16e2	SMART
LRR	965	992	8.73e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000149126

SMART Domains

Protein: ENSMUSP00000114231
Gene: ENSMUSG00000032691

Domain	Start	End	E-Value	Type
PYRIN	4	87	6.39e-33	SMART
Pfam:FISNA	135	173	1.6e-12	PFAM

Coding Region Coverage

Validation Efficiency

MGI Phenotype

Strain: 3686871
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a pyrin-like protein containing a pyrin domain, a nucleotide-binding site (NBS) domain, and a leucine-rich repeat (LRR) motif. This protein interacts with the apoptosis-associated speck-like protein PYCARD/ASC, which contains a caspase recruitment domain, and is a member of the NALP3 inflammasome complex. This complex functions as an upstream activator of NF-kappaB signaling, and it plays a role in the regulation of inflammation, the immune response, and apoptosis. Mutations in this gene are associated with familial cold autoinflammatory syndrome (FCAS), Muckle-Wells syndrome (MWS), chronic infantile neurological cutaneous and articular (CINCA) syndrome, and neonatal-onset multisystem inflammatory disease (NOMID). Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. Alternative 5' UTR structures are suggested by available data; however, insufficient evidence is available to determine if all of the represented 5' UTR splice patterns are biologically valid. [provided by RefSeq, Oct 2008]
PHENOTYPE: Mice homozygous for null mutations exhibit attenuated inflammatory responses related to decrease secretion of IL-1beta and IL-18. Mice heterozygous for activating mutations suffer from autoinflammatory attacks that lead to organ failure and death before weaning. [provided by MGI curators]

Allele List at MGI

All alleles(13) : Targeted(9) Chemically induced(4)

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932438A13Rik	T	A	3: 37,046,280	H1218Q	possibly damaging	Het
Acap3	G	A	4: 155,902,219	V335M	probably damaging	Het
Apex1	C	T	14: 50,926,254	L113F	possibly damaging	Het
C530008M17Rik	A	G	5: 76,658,074		probably benign	Het
Cd33	C	T	7: 43,532,905	V39M	probably damaging	Het
Chek2	A	G	5: 110,848,670	D166G	probably damaging	Het
Col2a1	T	C	15: 97,976,173	K1376R	unknown	Het
Cpd	C	T	11: 76,795,613	R963H	probably damaging	Het
Cyp2c67	A	C	19: 39,639,932	Y189*	probably null	Het
Dock6	T	C	9: 21,811,807	E1606G	possibly damaging	Het
Dusp4	A	T	8: 34,818,512	E309V	probably benign	Het
Dync2h1	A	G	9: 7,162,789	I600T	probably damaging	Het
Fer1l4	A	G	2: 156,052,185	V66A	probably benign	Het
Fktn	T	C	4: 53,737,568	L269P	possibly damaging	Het
Ftsj3	A	G	11: 106,250,359	I645T	probably damaging	Het
Fxr2	A	G	11: 69,643,887	H198R	probably damaging	Het
Fzd7	T	C	1: 59,484,380	V474A	probably damaging	Het
Gm10295	T	A	7: 71,350,658	D58V	unknown	Het
Gm13119	T	A	4: 144,363,377	L329Q	probably damaging	Het
Hdlbp	T	C	1: 93,430,169	I337V	probably benign	Het
Hydin	T	C	8: 110,326,401	V235A	probably benign	Het
Igfbp4	C	T	11: 99,048,243	H30Y	probably damaging	Het
Kcna4	T	C	2: 107,296,391	V490A	probably damaging	Het
Kcnj13	T	G	1: 87,386,978	D174A	probably benign	Het
Krt7	T	A	15: 101,423,421	L373Q	probably benign	Het
Lama3	G	A	18: 12,481,037	V1288I	probably benign	Het
Mroh9	T	C	1: 163,047,866	D488G	possibly damaging	Het
Myh7	T	C	14: 54,979,537	E1121G	probably damaging	Het
Myom1	A	G	17: 71,077,917	N768D	probably damaging	Het
Naa16	T	C	14: 79,384,756	T48A	probably damaging	Het
Naglu	C	T	11: 101,073,947	P287S	probably benign	Het
Nipbl	A	G	15: 8,350,455	V951A	possibly damaging	Het
Nlrp4e	T	C	7: 23,353,161		probably benign	Het
Nt5dc1	C	T	10: 34,407,557	A79T	possibly damaging	Het
Olfr432	T	C	1: 174,050,685	F104S	probably damaging	Het
Olfr775	A	T	10: 129,250,740	I69F	possibly damaging	Het
Olfr911-ps1	A	G	9: 38,523,733		probably benign	Het
Otof	A	G	5: 30,384,253	L774P	possibly damaging	Het
Phf20l1	C	T	15: 66,613,132	R322C	probably damaging	Het
Pkhd1	C	T	1: 20,209,176	G2973R	probably benign	Het
Plekhg5	G	T	4: 152,108,526	D613Y	probably damaging	Het
Ppm1h	T	A	10: 122,878,629		probably null	Het
Prpf39	T	C	12: 65,042,481		probably benign	Het
Rtn3	A	G	19: 7,483,041	S15P	unknown	Het
Slc22a28	G	T	19: 8,116,908		probably benign	Het
Slc4a5	T	A	6: 83,262,533	L143Q	probably damaging	Het
Sox17	T	C	1: 4,492,203	D130G	possibly damaging	Het
Stag1	A	G	9: 100,951,657	T1108A	possibly damaging	Het
Sugp2	G	A	8: 70,242,535	D53N	probably damaging	Het
Trim33	G	A	3: 103,353,918		probably benign	Het
Ttn	A	G	2: 76,799,224	I14291T	probably damaging	Het
Ttn	A	G	2: 76,789,525	V15933A	probably damaging	Het
Tulp3	A	C	6: 128,325,884	I324S	probably damaging	Het
Zfhx2	T	C	14: 55,064,260	E2089G	probably damaging	Het
Zhx1	T	C	15: 58,054,679	D57G	probably benign	Het

Other mutations in Nlrp3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00421:Nlrp3	APN	11	59565943	missense	probably damaging	0.99
IGL00573:Nlrp3	APN	11	59565116	missense	possibly damaging	0.93
IGL01637:Nlrp3	APN	11	59549378	missense	probably damaging	0.99
IGL02010:Nlrp3	APN	11	59549535	missense	probably benign
IGL02334:Nlrp3	APN	11	59565083	missense	probably benign
IGL02417:Nlrp3	APN	11	59566023	unclassified	probably benign
IGL02578:Nlrp3	APN	11	59548401	missense	probably damaging	1.00
IGL02710:Nlrp3	APN	11	59565976	missense	probably damaging	0.99
IGL02816:Nlrp3	APN	11	59555782	missense	probably benign	0.03
IGL03157:Nlrp3	APN	11	59549546	missense	possibly damaging	0.80
IGL03334:Nlrp3	APN	11	59549016	missense	probably damaging	1.00
Flogiston	UTSW	11	59558448	missense	probably benign	0.00
nd1	UTSW	11	59565974	missense	probably benign	0.45
Nd14	UTSW	11	59555875	missense	possibly damaging	0.89
Nd3	UTSW	11	59565974	missense	probably benign	0.45
nd5	UTSW	11	59565879	missense	probably benign	0.01
nd6	UTSW	11	59549354	missense	probably damaging	1.00
nd7	UTSW	11	59555875	missense	possibly damaging	0.89
Nd9	UTSW	11	59549354	missense	probably damaging	1.00
Park2	UTSW	11	59565128	nonsense	probably null
Park3	UTSW	11	59565850	missense	probably benign	0.02
Park4	UTSW	11	59549531	missense	probably benign	0.19
Park5	UTSW	11	59548476	missense	probably damaging	0.99
Park6	UTSW	11	59549036	missense	probably damaging	1.00
Park7	UTSW	11	59548010	nonsense	probably null
Park8	UTSW	11	59566199	missense	probably benign	0.19
R0008:Nlrp3	UTSW	11	59558448	missense	probably benign	0.00
R0008:Nlrp3	UTSW	11	59558448	missense	probably benign	0.00
R0052:Nlrp3	UTSW	11	59565128	nonsense	probably null
R0362:Nlrp3	UTSW	11	59548797	missense	possibly damaging	0.49
R0416:Nlrp3	UTSW	11	59555924	splice site	probably benign
R0649:Nlrp3	UTSW	11	59548542	missense	possibly damaging	0.83
R0740:Nlrp3	UTSW	11	59548256	missense	probably benign	0.01
R0863:Nlrp3	UTSW	11	59565850	missense	probably benign	0.02
R1300:Nlrp3	UTSW	11	59555768	missense	possibly damaging	0.86
R1414:Nlrp3	UTSW	11	59549531	missense	probably benign	0.19
R1622:Nlrp3	UTSW	11	59548476	missense	probably damaging	0.99
R1654:Nlrp3	UTSW	11	59543123	missense	probably benign	0.03
R1715:Nlrp3	UTSW	11	59543351	missense	probably damaging	1.00
R1754:Nlrp3	UTSW	11	59558402	missense	possibly damaging	0.80
R1837:Nlrp3	UTSW	11	59548916	missense	probably benign	0.00
R1905:Nlrp3	UTSW	11	59549036	missense	probably damaging	1.00
R2281:Nlrp3	UTSW	11	59549136	missense	possibly damaging	0.70
R4296:Nlrp3	UTSW	11	59549661	missense	possibly damaging	0.89
R4305:Nlrp3	UTSW	11	59548010	nonsense	probably null
R4540:Nlrp3	UTSW	11	59551899	missense	possibly damaging	0.83
R4591:Nlrp3	UTSW	11	59549222	missense	probably benign	0.00
R4816:Nlrp3	UTSW	11	59548301	missense	probably benign	0.32
R4913:Nlrp3	UTSW	11	59549238	missense	probably benign	0.09
R4970:Nlrp3	UTSW	11	59548728	missense	probably damaging	1.00
R5051:Nlrp3	UTSW	11	59566199	missense	probably benign	0.19
R5112:Nlrp3	UTSW	11	59548728	missense	probably damaging	1.00
R5185:Nlrp3	UTSW	11	59565084	missense	probably benign	0.05
R5417:Nlrp3	UTSW	11	59549063	missense	probably damaging	1.00
R5709:Nlrp3	UTSW	11	59555748	nonsense	probably null
R5869:Nlrp3	UTSW	11	59548134	missense	probably damaging	1.00
R5898:Nlrp3	UTSW	11	59546852	missense	probably benign	0.00
R5953:Nlrp3	UTSW	11	59546791	missense	probably benign
R5979:Nlrp3	UTSW	11	59548971	missense	probably benign	0.06
R6359:Nlrp3	UTSW	11	59548566	missense	probably damaging	0.97
R6723:Nlrp3	UTSW	11	59565192	missense	probably damaging	1.00
R7261:Nlrp3	UTSW	11	59548446	missense	possibly damaging	0.83
R7349:Nlrp3	UTSW	11	59548086	missense	probably damaging	1.00
R7388:Nlrp3	UTSW	11	59565066	missense	probably benign	0.00
RF031:Nlrp3	UTSW	11	59558552	frame shift	probably null
RF040:Nlrp3	UTSW	11	59558552	frame shift	probably null
Z1088:Nlrp3	UTSW	11	59551860	missense	possibly damaging	0.67

Posted On

2013-07-11