Mutagenetix > Incidental Mutation

Incidental Mutation 'RF003:Nup155'

602655

Institutional Source

Beutler Lab

Gene Symbol

Nup155

Ensembl Gene

ENSMUSG00000022142

Gene Name

nucleoporin 155

Synonyms

D930027M19Rik

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

RF003 (G1)

Quality Score

156.468

Status

Not validated

Chromosome

Chromosomal Location

8109273-8161247 bp(+) (GRCm38)

Type of Mutation

critical splice acceptor site

DNA Base Change (assembly)

T to TTTTG at 8119176 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000128819 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000163765] [ENSMUST00000230017]

AlphaFold

Q99P88

Predicted Effect

probably benign
Transcript: ENSMUST00000163765

SMART Domains

Protein: ENSMUSP00000128819
Gene: ENSMUSG00000022142

Domain	Start	End	E-Value	Type
low complexity region	7	18	N/A	INTRINSIC
Pfam:Nucleoporin_N	77	510	3.5e-105	PFAM
low complexity region	600	619	N/A	INTRINSIC
Pfam:Nucleoporin_C	678	1221	3.6e-23	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000230017

Coding Region Coverage

1x: 99.8%
3x: 99.7%
10x: 99.2%
20x: 98.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Nucleoporins are proteins that play an important role in the assembly and functioning of the nuclear pore complex (NPC) which regulates the movement of macromolecules across the nuclear envelope (NE). The protein encoded by this gene plays a role in the fusion of NE vesicles and formation of the double membrane NE. The protein may also be involved in cardiac physiology and may be associated with the pathogenesis of atrial fibrillation. Alternative splicing results in multiple transcript variants of this gene. A pseudogene associated with this gene is located on chromosome 6. [provided by RefSeq, May 2013]
PHENOTYPE: Mice homozygous for a gene trap allele die prior to E8.5. Mice homozygous for a gene trap allele exhibit atria fibrillation associated with shortened action potential duration. [provided by MGI curators]

Allele List at MGI

All alleles(18) : Gene trapped(18)

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930433I11Rik	AACC	A	7: 40,993,055 (GRCm38)		probably benign	Het
A630073D07Rik	A	C	6: 132,627,443 (GRCm38)	L13R	unknown	Het
Alg9	GGC	GGCCGC	9: 50,775,427 (GRCm38)		probably benign	Het
Arc	G	C	15: 74,672,131 (GRCm38)	T81S	probably benign	Het
Atad5	A	T	11: 80,111,560 (GRCm38)	K1059N	probably damaging	Het
Bdp1	C	A	13: 100,060,450 (GRCm38)	Q1142H	probably benign	Het
Bdp1	C	A	13: 100,060,449 (GRCm38)	V1143F	probably benign	Het
Ccdc33	T	C	9: 58,058,291 (GRCm38)	S583G	probably benign	Het
Cd109	TTAT	TTATTTATTTATATAT	9: 78,712,531 (GRCm38)		probably benign	Het
Cep192	A	T	18: 67,837,956 (GRCm38)	R1009S	probably benign	Het
Clvs2	T	A	10: 33,622,925 (GRCm38)	H3L	probably damaging	Het
Cnot6	T	C	11: 49,702,613 (GRCm38)	M14V	probably benign	Het
Colec10	A	G	15: 54,462,391 (GRCm38)	R206G	possibly damaging	Het
Dennd6a	T	C	14: 26,629,534 (GRCm38)	I598T	probably damaging	Het
Dmrt2	T	C	19: 25,678,134 (GRCm38)	S366P	probably damaging	Het
Dnmt1	AGTTCCTACCTCGTT	AGTTCCTACCTCGTTTTGGGGGCGGAGCACCGTTCCTACCTCGTT	9: 20,910,131 (GRCm38)		probably null	Het
Efhb	T	C	17: 53,400,891 (GRCm38)	D748G	probably damaging	Het
Etl4	C	T	2: 20,519,918 (GRCm38)	Q21*	probably null	Het
Fam172a	A	T	13: 77,834,675 (GRCm38)	I135L	possibly damaging	Het
Fam71e1	C	CGGAGGGAGGAAGGCTGGATCCTGGATACCTGGGTA	7: 44,500,527 (GRCm38)		probably null	Het
Flywch1	CCACTCCTGGTGT	CCACTCCTGGTGTGGGGAGGCTACGTACTCACACACTCCTGGTGT	17: 23,762,166 (GRCm38)		probably null	Het
Fmn1	ACCTCC	ACCTCCCCCTCC	2: 113,525,786 (GRCm38)		probably benign	Het
Fsip2	T	A	2: 82,991,521 (GRCm38)	M5866K	probably benign	Het
Gab3	CTT	CTTATT	X: 75,000,006 (GRCm38)		probably null	Het
Gnl2	T	A	4: 125,043,725 (GRCm38)		probably null	Het
Grip2	C	T	6: 91,783,593 (GRCm38)	R341Q	probably benign	Het
Hmcn1	T	A	1: 150,624,561 (GRCm38)	H3960L	probably damaging	Het
Igkv6-25	T	A	6: 70,215,778 (GRCm38)	Y56*	probably null	Het
Il12a	A	T	3: 68,695,229 (GRCm38)	T102S	probably benign	Het
Il1a	T	A	2: 129,302,932 (GRCm38)	I189F	possibly damaging	Het
Inpp4b	T	A	8: 81,969,521 (GRCm38)	Y361*	probably null	Het
Iqcf4	CTTTTCCTTTTCCTTTT	CTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCATTTTCCTTTTCCTTTT	9: 106,570,607 (GRCm38)		probably benign	Het
Krt1	AAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCAC	AAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCAC	15: 101,850,378 (GRCm38)		probably benign	Het
Las1l	AGTGG	AGTGGTGG	X: 95,940,816 (GRCm38)		probably benign	Het
Lrmp	AGCACATTG	AGCACATTGTGCACATTG	6: 145,173,783 (GRCm38)		probably benign	Het
Lrrc8d	T	C	5: 105,812,641 (GRCm38)	Y306H	probably damaging	Het
Mamld1	AGC	AGCCGC	X: 71,118,820 (GRCm38)		probably benign	Het
Map1a	CTCCAGCTCCAGCTCCAGCTCCA	CTCCAGCTCCAGCTCCAGCTCCAGCTCCAGATCCAGCTCCAGCTCCAGCTCCA	2: 121,306,296 (GRCm38)		probably benign	Het
Map1b	G	T	13: 99,430,750 (GRCm38)	A1821E	unknown	Het
Maz	A	G	7: 127,025,497 (GRCm38)	C284R	probably damaging	Het
Med23	A	G	10: 24,903,785 (GRCm38)	H920R	probably damaging	Het
Megf10	CCAGCAGCAGCAGCAGCAGCAG	CCAGCAGCAGCAGCAGCAG	18: 57,294,027 (GRCm38)		probably benign	Het
Mmp14	C	T	14: 54,439,014 (GRCm38)	R339*	probably null	Het
Mroh9	T	G	1: 163,058,061 (GRCm38)	K334T	probably damaging	Het
Nab1	A	T	1: 52,479,282 (GRCm38)	C320S	probably damaging	Het
Noto	T	C	6: 85,424,210 (GRCm38)	S74P	probably benign	Het
Nudt4	T	C	10: 95,549,374 (GRCm38)	N152D	possibly damaging	Het
Nusap1	AGCTGAGA	AGCTGAGATACACGTTAGCAGTGAGGAGCAGGCTGAGA	2: 119,627,603 (GRCm38)		probably benign	Het
Olfr118	A	C	17: 37,672,858 (GRCm38)	K278N	probably damaging	Het
Olfr330	CA	C	11: 58,529,157 (GRCm38)		probably null	Het
Olfr461	T	C	6: 40,544,362 (GRCm38)	I206V	probably benign	Het
Olfr585	TTA	TTAGTA	7: 103,098,306 (GRCm38)		probably null	Het
Olfr585	GTTAT	GTTATTAT	7: 103,098,305 (GRCm38)			Het
Olfr710	T	A	7: 106,944,648 (GRCm38)	M118L	probably damaging	Het
Olfr828	T	C	9: 18,815,482 (GRCm38)	T271A	probably benign	Het
Plxnc1	T	C	10: 94,794,444 (GRCm38)	Y1531C	probably damaging	Het
Pnmal2	TGA	TGAAGA	7: 16,946,016 (GRCm38)		probably benign	Het
Rp1	A	G	1: 4,344,694 (GRCm38)	V2065A	probably damaging	Het
Sbp	AAGATGCTGACAACA	AAGATGCTGACAACAGAGATGCTGACAACA	17: 23,945,369 (GRCm38)		probably benign	Het
Sepsecs	G	A	5: 52,647,191 (GRCm38)	T379M	probably benign	Het
Sfswap	GGCC	GGCCCACTCTGCC	5: 129,569,764 (GRCm38)		probably benign	Het
Six3	GCG	GCGTCG	17: 85,621,370 (GRCm38)		probably benign	Het
Tfeb	C	T	17: 47,788,078 (GRCm38)	T259I	possibly damaging	Het
Tgoln1	A	AAACTCAG	6: 72,616,352 (GRCm38)		probably null	Het
Tmem94	G	A	11: 115,796,132 (GRCm38)	V1108M	probably damaging	Het
Usp35	T	C	7: 97,322,096 (GRCm38)	K297E	possibly damaging	Het
Vcpkmt	T	A	12: 69,582,824 (GRCm38)	T55S	possibly damaging	Het
Zfp384	GCCCAGGCCCAG	GCCCAGGCCCAGTCCCAGGCCCAG	6: 125,036,483 (GRCm38)		probably benign	Het
Zfp384	GGCCC	GGCCCTGGCCCAAGCCC	6: 125,036,476 (GRCm38)		probably benign	Het
Zfp384	GCCCAGGCCCAGGCCCAGGCCCAG	GCCCAGGCCCAGTCCCAGGCCCAGGCCCAGGCCCAG	6: 125,036,471 (GRCm38)		probably benign	Het
Zfp407	A	T	18: 84,209,563 (GRCm38)	S1974T	probably benign	Het
Zfp677	T	C	17: 21,397,442 (GRCm38)	S254P	probably damaging	Het

Other mutations in Nup155

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00228:Nup155	APN	15	8,121,455 (GRCm38)	splice site	probably benign
IGL00426:Nup155	APN	15	8,156,794 (GRCm38)	makesense	probably null
IGL00765:Nup155	APN	15	8,153,228 (GRCm38)	missense	probably benign	0.16
IGL00936:Nup155	APN	15	8,128,405 (GRCm38)	splice site	probably benign
IGL01124:Nup155	APN	15	8,153,679 (GRCm38)	missense	probably damaging	0.97
IGL01739:Nup155	APN	15	8,135,788 (GRCm38)	missense	probably benign	0.01
IGL02013:Nup155	APN	15	8,113,648 (GRCm38)	missense	possibly damaging	0.61
IGL02066:Nup155	APN	15	8,157,766 (GRCm38)	unclassified	probably benign
IGL02231:Nup155	APN	15	8,144,064 (GRCm38)	missense	probably damaging	1.00
IGL02246:Nup155	APN	15	8,143,002 (GRCm38)	missense	probably benign
IGL02289:Nup155	APN	15	8,131,493 (GRCm38)	missense	probably damaging	1.00
IGL02608:Nup155	APN	15	8,109,471 (GRCm38)	missense	probably benign
IGL02749:Nup155	APN	15	8,134,076 (GRCm38)	missense	probably damaging	1.00
IGL02813:Nup155	APN	15	8,130,121 (GRCm38)	splice site	probably benign
IGL03102:Nup155	APN	15	8,147,284 (GRCm38)	missense	probably benign	0.00
H8930:Nup155	UTSW	15	8,157,658 (GRCm38)	missense	possibly damaging	0.50
IGL02835:Nup155	UTSW	15	8,143,130 (GRCm38)	missense	probably damaging	1.00
R0314:Nup155	UTSW	15	8,147,252 (GRCm38)	missense	probably benign	0.00
R0365:Nup155	UTSW	15	8,131,543 (GRCm38)	missense	probably damaging	1.00
R0586:Nup155	UTSW	15	8,130,232 (GRCm38)	missense	probably benign	0.39
R0764:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R0839:Nup155	UTSW	15	8,145,587 (GRCm38)	missense	possibly damaging	0.48
R0844:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1066:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1067:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1085:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1137:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1162:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1166:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1202:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1203:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1219:Nup155	UTSW	15	8,117,338 (GRCm38)	missense	possibly damaging	0.80
R1385:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1421:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1448:Nup155	UTSW	15	8,112,406 (GRCm38)	missense	probably benign	0.44
R1611:Nup155	UTSW	15	8,130,160 (GRCm38)	missense	probably damaging	1.00
R1836:Nup155	UTSW	15	8,154,980 (GRCm38)	missense	possibly damaging	0.79
R1863:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1866:Nup155	UTSW	15	8,115,526 (GRCm38)	missense	probably damaging	1.00
R1894:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R1976:Nup155	UTSW	15	8,135,827 (GRCm38)	missense	probably benign	0.01
R2024:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R2026:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R2027:Nup155	UTSW	15	8,157,760 (GRCm38)	missense	probably damaging	1.00
R2077:Nup155	UTSW	15	8,143,026 (GRCm38)	missense	probably damaging	1.00
R2111:Nup155	UTSW	15	8,121,467 (GRCm38)	missense	probably benign	0.45
R2921:Nup155	UTSW	15	8,153,641 (GRCm38)	missense	probably damaging	1.00
R2936:Nup155	UTSW	15	8,143,049 (GRCm38)	missense	possibly damaging	0.89
R3108:Nup155	UTSW	15	8,117,306 (GRCm38)	missense	probably null	1.00
R3161:Nup155	UTSW	15	8,148,383 (GRCm38)	missense	possibly damaging	0.56
R3162:Nup155	UTSW	15	8,148,383 (GRCm38)	missense	possibly damaging	0.56
R3162:Nup155	UTSW	15	8,148,383 (GRCm38)	missense	possibly damaging	0.56
R3522:Nup155	UTSW	15	8,156,678 (GRCm38)	splice site	probably benign
R4423:Nup155	UTSW	15	8,121,464 (GRCm38)	missense	probably damaging	0.99
R4451:Nup155	UTSW	15	8,150,882 (GRCm38)	missense	probably benign	0.02
R4498:Nup155	UTSW	15	8,153,673 (GRCm38)	missense	possibly damaging	0.88
R4780:Nup155	UTSW	15	8,157,703 (GRCm38)	missense	probably benign	0.00
R4822:Nup155	UTSW	15	8,128,526 (GRCm38)	missense	possibly damaging	0.49
R5013:Nup155	UTSW	15	8,124,238 (GRCm38)	missense	probably benign	0.00
R5064:Nup155	UTSW	15	8,135,870 (GRCm38)	missense	probably damaging	1.00
R5172:Nup155	UTSW	15	8,109,542 (GRCm38)	missense	probably benign	0.06
R5406:Nup155	UTSW	15	8,153,638 (GRCm38)	critical splice acceptor site	probably null
R5551:Nup155	UTSW	15	8,148,333 (GRCm38)	missense	probably benign	0.09
R5588:Nup155	UTSW	15	8,119,253 (GRCm38)	critical splice donor site	probably null
R5977:Nup155	UTSW	15	8,130,237 (GRCm38)	critical splice donor site	probably null
R6035:Nup155	UTSW	15	8,144,093 (GRCm38)	missense	probably benign
R6035:Nup155	UTSW	15	8,144,093 (GRCm38)	missense	probably benign
R6036:Nup155	UTSW	15	8,128,411 (GRCm38)	missense	probably benign	0.16
R6036:Nup155	UTSW	15	8,128,411 (GRCm38)	missense	probably benign	0.16
R6085:Nup155	UTSW	15	8,148,358 (GRCm38)	missense	probably damaging	0.98
R6188:Nup155	UTSW	15	8,109,575 (GRCm38)	missense	probably damaging	1.00
R6232:Nup155	UTSW	15	8,109,479 (GRCm38)	missense	probably benign	0.02
R6257:Nup155	UTSW	15	8,150,798 (GRCm38)	nonsense	probably null
R6262:Nup155	UTSW	15	8,156,741 (GRCm38)	missense	probably benign	0.03
R6267:Nup155	UTSW	15	8,153,155 (GRCm38)	missense	probably damaging	1.00
R6296:Nup155	UTSW	15	8,153,155 (GRCm38)	missense	probably damaging	1.00
R6299:Nup155	UTSW	15	8,128,438 (GRCm38)	missense	possibly damaging	0.88
R6303:Nup155	UTSW	15	8,118,042 (GRCm38)	missense	probably damaging	1.00
R6304:Nup155	UTSW	15	8,118,042 (GRCm38)	missense	probably damaging	1.00
R6763:Nup155	UTSW	15	8,135,895 (GRCm38)	nonsense	probably null
R6958:Nup155	UTSW	15	8,147,154 (GRCm38)	missense	probably damaging	1.00
R7088:Nup155	UTSW	15	8,156,693 (GRCm38)	missense	probably benign	0.11
R7313:Nup155	UTSW	15	8,154,922 (GRCm38)	missense	probably damaging	0.96
R7451:Nup155	UTSW	15	8,145,607 (GRCm38)	nonsense	probably null
R7560:Nup155	UTSW	15	8,155,047 (GRCm38)	missense	probably benign	0.39
R7633:Nup155	UTSW	15	8,109,453 (GRCm38)	missense	probably damaging	0.99
R7670:Nup155	UTSW	15	8,153,696 (GRCm38)	missense	probably damaging	0.99
R7726:Nup155	UTSW	15	8,122,139 (GRCm38)	missense	probably damaging	1.00
R7752:Nup155	UTSW	15	8,116,442 (GRCm38)	missense	possibly damaging	0.53
R7889:Nup155	UTSW	15	8,121,507 (GRCm38)	missense	probably damaging	0.98
R7899:Nup155	UTSW	15	8,119,179 (GRCm38)	missense	probably damaging	1.00
R7901:Nup155	UTSW	15	8,116,442 (GRCm38)	missense	possibly damaging	0.53
R8429:Nup155	UTSW	15	8,112,420 (GRCm38)	missense	probably damaging	0.96
R8467:Nup155	UTSW	15	8,121,531 (GRCm38)	missense	probably benign	0.00
R8507:Nup155	UTSW	15	8,147,560 (GRCm38)	nonsense	probably null
R8860:Nup155	UTSW	15	8,130,156 (GRCm38)	missense	possibly damaging	0.96
R8994:Nup155	UTSW	15	8,143,161 (GRCm38)	critical splice donor site	probably null
R9046:Nup155	UTSW	15	8,128,435 (GRCm38)	frame shift	probably null
R9086:Nup155	UTSW	15	8,148,346 (GRCm38)	missense	possibly damaging	0.84
R9500:Nup155	UTSW	15	8,112,316 (GRCm38)	missense	probably damaging	1.00
RF048:Nup155	UTSW	15	8,119,176 (GRCm38)	critical splice acceptor site	probably benign
Z1177:Nup155	UTSW	15	8,120,489 (GRCm38)	missense	probably benign	0.23

Predicted Primers

PCR Primer
(F):5'- TGGTCCTTATTGCAGACACTGT -3'
(R):5'- CTTCCTTATAAGACAGCGGTGT -3'

Sequencing Primer
(F):5'- CTTATTGCAGACACTGTGTACG -3'
(R):5'- TCCATAATGAGATCTGGCGC -3'

Posted On

2019-12-04