Mutagenetix > Incidental Mutation

Incidental Mutation 'RF009:Lrrc2'

603064

Institutional Source

Beutler Lab

Gene Symbol

Lrrc2

Ensembl Gene

ENSMUSG00000032495

Gene Name

leucine rich repeat containing 2

Synonyms

2400002D05Rik, 4933431K03Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

RF009 (G1)

Quality Score

214.458

Status

Not validated

Chromosome

Chromosomal Location

110780613-110813134 bp(+) (GRCm39)

Type of Mutation

makesense

DNA Base Change (assembly)

TTGATTCGGTTCACC to T at 110810744 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000035076 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035076] [ENSMUST00000084922] [ENSMUST00000199891]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000035076

SMART Domains

Protein: ENSMUSP00000035076
Gene: ENSMUSG00000032495

Domain	Start	End	E-Value	Type
Blast:LRR	143	165	5e-7	BLAST
LRR_TYP	166	189	4.87e-4	SMART
LRR	236	258	1.41e1	SMART
LRR	259	282	2.27e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000084922

SMART Domains

Protein: ENSMUSP00000081985
Gene: ENSMUSG00000066319

Domain	Start	End	E-Value	Type
zf-3CxxC	52	164	2.13e-52	SMART
low complexity region	356	404	N/A	INTRINSIC
low complexity region	458	474	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000196598

Predicted Effect

probably benign
Transcript: ENSMUST00000199891

SMART Domains

Protein: ENSMUSP00000143305
Gene: ENSMUSG00000066319

Domain	Start	End	E-Value	Type
zf-3CxxC	52	164	2.13e-52	SMART
low complexity region	356	404	N/A	INTRINSIC
low complexity region	458	474	N/A	INTRINSIC

Coding Region Coverage

1x: 99.8%
3x: 99.7%
10x: 99.3%
20x: 98.5%

Validation Efficiency

96% (53/55)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the leucine-rich repeat-containing family of proteins, which function in diverse biological pathways. This family member may possibly be a nuclear protein. Similarity to the RAS suppressor protein, as well as expression down-regulation observed in tumor cells, suggests that it may function as a tumor suppressor. The gene is located in the chromosome 3 common eliminated region 1 (C3CER1), a 1.4 Mb region that is commonly deleted in diverse tumors. A related pseudogene has been identified on chromosome 2. [provided by RefSeq, Sep 2011]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
6030445D17Rik	ACACACACCCGC	AC	4: 136,189,661 (GRCm39)		probably null	Het
AI182371	A	G	2: 34,979,209 (GRCm39)	V153A	possibly damaging	Het
AI837181	CGG	CGGTGG	19: 5,475,262 (GRCm39)		probably benign	Het
Ankhd1	GCGGCG	GCGGCGTCGGCG	18: 36,693,975 (GRCm39)		probably benign	Het
Apoc2	C	T	7: 19,405,767 (GRCm39)	M71I	probably benign	Het
Arhgap17	CTGTTGTTG	CTGTTG	7: 122,886,085 (GRCm39)		probably benign	Het
Atrn	C	A	2: 130,748,842 (GRCm39)	T121K	probably benign	Het
Btnl12	T	C	16: 37,674,841 (GRCm39)	D207G	probably benign	Het
Ccdc170	C	CCAG	10: 4,511,030 (GRCm39)		probably benign	Het
Cckbr	GCA	G	7: 105,083,893 (GRCm39)		probably null	Het
Cdk13	T	C	13: 17,978,329 (GRCm39)	D303G	unknown	Het
Cfap65	C	A	1: 74,944,806 (GRCm39)	R1477L	probably damaging	Het
Chd2	A	G	7: 73,169,410 (GRCm39)	S37P	possibly damaging	Het
Chga	AGC	AGCCGC	12: 102,527,679 (GRCm39)		probably benign	Het
Csf2rb2	T	C	15: 78,176,127 (GRCm39)	I259V	probably benign	Het
Csnk1d	A	T	11: 120,862,453 (GRCm39)	N275K	possibly damaging	Het
Dmxl1	A	C	18: 50,026,461 (GRCm39)	R1856S	probably damaging	Het
Dnah5	T	C	15: 28,204,165 (GRCm39)	V14A	probably benign	Het
Edc4	G	A	8: 106,615,812 (GRCm39)	S729N	probably benign	Het
Emilin3	T	C	2: 160,751,012 (GRCm39)	S246G	probably benign	Het
Epc2	T	G	2: 49,422,249 (GRCm39)		probably null	Het
Exoc6	T	A	19: 37,560,068 (GRCm39)	F101I	probably benign	Het
Fam171b	GCAGCA	GCAGCACCAGCA	2: 83,643,224 (GRCm39)		probably benign	Het
Fam81b	CTGTT	CTGTTGTT	13: 76,419,435 (GRCm39)		probably benign	Het
Flywch1	CTCACCCACTCCTGGTGT	CTCACCCACTCCTGGTGTGGGGAGGCTACGTAGTCACCCACTCCTGGTGT	17: 23,981,135 (GRCm39)		probably null	Het
Gab3	TTC	TTCCTC	X: 74,043,598 (GRCm39)		probably benign	Het
Gab3	CTT	CTTATT	X: 74,043,630 (GRCm39)		probably null	Het
Gabpa	C	A	16: 84,641,224 (GRCm39)	Q93K	probably benign	Het
Gabre	GGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCTGGCTCAGGCTC	GGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCTGGCTCAGGCTC	X: 71,314,318 (GRCm39)		probably benign	Het
Gabre	GGCTCA	GGCTCAAGCTCA	X: 71,314,319 (GRCm39)		probably benign	Het
H2-T3	TCCCGAAGAAC	TC	17: 36,500,294 (GRCm39)		probably benign	Het
Htr5a	A	G	5: 28,047,859 (GRCm39)	D138G	probably damaging	Het
Ifi207	G	A	1: 173,556,558 (GRCm39)	P727S	probably benign	Het
Ifna13	T	A	4: 88,562,145 (GRCm39)	S160C	probably damaging	Het
Kcnh8	G	A	17: 53,285,267 (GRCm39)	R1079H	probably benign	Het
Klri2	GGAG	GG	6: 129,710,737 (GRCm39)		probably null	Het
Lce1m	GTTGCTGCCACTG	GTTGCTGCCACTGTTGCTGCCACTG	3: 92,925,438 (GRCm39)		probably benign	Het
Lrch1	TTGGTGGTGCTGGTGG	TTGGTGG	14: 75,185,014 (GRCm39)		probably benign	Het
Lrch4	A	G	5: 137,635,805 (GRCm39)		probably null	Het
Map1a	GCTCCAGC	GCTCCAGCCCCAGCTCCAGCTCCAGCTCCACCTCCAGC	2: 121,136,782 (GRCm39)		probably benign	Het
Mettl25	T	C	10: 105,669,100 (GRCm39)		probably benign	Het
Mex3b	A	G	7: 82,516,968 (GRCm39)	D37G	probably damaging	Het
Mon1a	T	A	9: 107,778,433 (GRCm39)	V219E	probably damaging	Het
Myh3	TTACG	TTACGTACG	11: 66,977,183 (GRCm39)		probably null	Het
Myh3	GATTA	GATTAATTA	11: 66,977,181 (GRCm39)		probably null	Het
Myh3	ATTAC	ATTACTTAC	11: 66,977,182 (GRCm39)		probably null	Het
Myo5b	T	A	18: 74,777,070 (GRCm39)	C377S	probably damaging	Het
Nefh	ACTTGGCCTCAGCTGGGG	ACTTGGCCTCAGCTGGGGCCTTGGCCTCAGCTGGGG	11: 4,890,997 (GRCm39)		probably benign	Het
Nos1ap	T	C	1: 170,146,150 (GRCm39)	D468G	probably damaging	Het
Ntn5	T	C	7: 45,342,684 (GRCm39)		probably null	Het
Oog2	T	C	4: 143,921,855 (GRCm39)	V255A	probably benign	Het
Or5ac15	T	A	16: 58,940,274 (GRCm39)	H53L	probably damaging	Het
Or8b37	A	T	9: 37,959,043 (GRCm39)	H175L	probably damaging	Het
Pdgfd	C	A	9: 6,288,624 (GRCm39)	L93M	probably damaging	Het
Pgls	G	T	8: 72,045,107 (GRCm39)	V83L	probably damaging	Het
Pigw	C	A	11: 84,767,987 (GRCm39)	Q447H	probably damaging	Het
Pnma8a	TCATGATGCACCTGCTTCAACATC	TCATGATGCACCTGCTTCAACATCGCATGATGCACCTGCTTCAACATC	7: 16,695,352 (GRCm39)		probably benign	Het
Poc1a	C	A	9: 106,172,417 (GRCm39)	L253M	possibly damaging	Het
Ppl	T	A	16: 4,915,795 (GRCm39)	E589D	probably benign	Het
Prkar1b	A	G	5: 139,094,376 (GRCm39)	S71P	probably benign	Het
Prx	T	C	7: 27,218,385 (GRCm39)	F1101S	probably damaging	Het
Rffl	A	G	11: 82,736,598 (GRCm39)	V26A	probably benign	Het
Scube3	T	A	17: 28,387,371 (GRCm39)	L923Q	probably damaging	Het
Setd2	C	T	9: 110,379,779 (GRCm39)	P1198L	probably damaging	Het
Shank2	C	A	7: 143,965,308 (GRCm39)	A972E	possibly damaging	Het
Slc10a6	A	G	5: 103,756,858 (GRCm39)	L302P	probably damaging	Het
Slc29a3	C	T	10: 60,586,340 (GRCm39)	G42D	probably benign	Het
Spart	T	C	3: 55,035,027 (GRCm39)	V471A	probably benign	Het
Srebf1	T	C	11: 60,094,942 (GRCm39)	T486A	probably benign	Het
Sspo	T	A	6: 48,436,919 (GRCm39)	Y1284*	probably null	Het
Supt20	AGCAGC	AGCAGCCGCAGC	3: 54,635,083 (GRCm39)		probably benign	Het
Tcof1	GCA	GCACCA	18: 60,968,815 (GRCm39)		probably benign	Het
Tff1	CTTCCTG	C	17: 31,383,901 (GRCm39)		probably benign	Het
Tmprss13	ATCTCCAGCAAGGGCACCTCCTCAGGCCTCTCCAGCAAGGACACCTCCTCAGGCCTCTCCAACAAGGACACCTCCTCAGGCCTCTCCAGCAAGGGCACCTCCTC	ATCTCCAGCAAGGGCACCTCCTCAGGGCTCTCCAGCAAGGGCACCTCCTCAGGCCTCTCCAGCAAGGACACCTCCTCAGGCCTCTCCAACAAGGACACCTCCTCAGGCCTCTCCAGCAAGGGCACCTCCTC	9: 45,239,762 (GRCm39)		probably benign	Het
Tnfrsf25	T	C	4: 152,204,081 (GRCm39)	W341R	probably damaging	Het
Trappc9	GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT	GCTGCTGCTGCTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT	15: 72,673,136 (GRCm39)		probably benign	Het
Trav8d-1	T	A	14: 53,016,207 (GRCm39)	L31Q	probably damaging	Het
Ttc23	A	T	7: 67,375,777 (GRCm39)	I452F	possibly damaging	Het
Uimc1	T	C	13: 55,198,598 (GRCm39)	E526G	possibly damaging	Het
Ulbp1	T	A	10: 7,397,405 (GRCm39)	K233N	unknown	Het
Usp17ld	A	T	7: 102,899,495 (GRCm39)	V479E	probably damaging	Het
Utrn	T	TGTTACCC	10: 12,509,689 (GRCm39)		probably null	Het
Vmn1r9	C	T	6: 57,048,465 (GRCm39)	S180L	probably benign	Het
Wdr97	GAGGAGGA	G	15: 76,247,367 (GRCm39)		probably null	Het
Zfp598	CACC	CACCCCTACC	17: 24,899,761 (GRCm39)		probably benign	Het

Other mutations in Lrrc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01796:Lrrc2	APN	9	110,809,886 (GRCm39)	splice site	probably null
IGL02243:Lrrc2	APN	9	110,799,125 (GRCm39)	missense	probably damaging	1.00
IGL02715:Lrrc2	APN	9	110,799,182 (GRCm39)	missense	probably damaging	1.00
IGL02793:Lrrc2	APN	9	110,808,695 (GRCm39)	critical splice donor site	probably null
IGL02958:Lrrc2	APN	9	110,791,741 (GRCm39)	critical splice donor site	probably null
PIT4362001:Lrrc2	UTSW	9	110,791,608 (GRCm39)	missense	possibly damaging	0.91
R0255:Lrrc2	UTSW	9	110,809,966 (GRCm39)	missense	possibly damaging	0.87
R0472:Lrrc2	UTSW	9	110,791,685 (GRCm39)	missense	probably benign	0.00
R0909:Lrrc2	UTSW	9	110,791,741 (GRCm39)	critical splice donor site	probably null
R1575:Lrrc2	UTSW	9	110,808,555 (GRCm39)	missense	probably benign	0.07
R1619:Lrrc2	UTSW	9	110,790,041 (GRCm39)	missense	probably benign	0.00
R1669:Lrrc2	UTSW	9	110,810,718 (GRCm39)	missense	probably damaging	0.99
R1778:Lrrc2	UTSW	9	110,809,908 (GRCm39)	missense	probably benign
R1914:Lrrc2	UTSW	9	110,810,007 (GRCm39)	missense	probably damaging	1.00
R2165:Lrrc2	UTSW	9	110,808,645 (GRCm39)	missense	possibly damaging	0.78
R3792:Lrrc2	UTSW	9	110,795,585 (GRCm39)	nonsense	probably null
R3793:Lrrc2	UTSW	9	110,795,585 (GRCm39)	nonsense	probably null
R4499:Lrrc2	UTSW	9	110,791,713 (GRCm39)	missense	probably benign	0.11
R4683:Lrrc2	UTSW	9	110,791,614 (GRCm39)	missense	possibly damaging	0.95
R4693:Lrrc2	UTSW	9	110,799,161 (GRCm39)	missense	probably damaging	1.00
R4723:Lrrc2	UTSW	9	110,799,228 (GRCm39)	critical splice donor site	probably null
R5033:Lrrc2	UTSW	9	110,809,987 (GRCm39)	missense	probably damaging	0.98
R5935:Lrrc2	UTSW	9	110,795,629 (GRCm39)	missense	probably benign	0.17
R6269:Lrrc2	UTSW	9	110,810,017 (GRCm39)	missense	probably damaging	1.00
R6645:Lrrc2	UTSW	9	110,799,175 (GRCm39)	missense	probably damaging	1.00
R6855:Lrrc2	UTSW	9	110,782,250 (GRCm39)	splice site	probably null
R7621:Lrrc2	UTSW	9	110,809,899 (GRCm39)	missense	probably benign	0.00
R7748:Lrrc2	UTSW	9	110,809,999 (GRCm39)	missense	possibly damaging	0.63
R7827:Lrrc2	UTSW	9	110,790,049 (GRCm39)	missense	possibly damaging	0.93
R8169:Lrrc2	UTSW	9	110,809,954 (GRCm39)	missense	probably benign
R8186:Lrrc2	UTSW	9	110,789,910 (GRCm39)	missense	possibly damaging	0.67
R8458:Lrrc2	UTSW	9	110,799,218 (GRCm39)	missense	probably damaging	1.00
R9146:Lrrc2	UTSW	9	110,808,582 (GRCm39)	missense	probably damaging	1.00
R9198:Lrrc2	UTSW	9	110,791,722 (GRCm39)	missense	probably benign	0.05
R9568:Lrrc2	UTSW	9	110,799,228 (GRCm39)	critical splice donor site	probably null
R9680:Lrrc2	UTSW	9	110,791,710 (GRCm39)	missense	probably damaging	1.00
R9761:Lrrc2	UTSW	9	110,809,942 (GRCm39)	missense	possibly damaging	0.49
RF021:Lrrc2	UTSW	9	110,810,744 (GRCm39)	makesense	probably null

Predicted Primers

PCR Primer
(F):5'- ATTATTTGTGGCTATTTGTGAACCA -3'
(R):5'- TGTGCATTCGTCTGCTAACATTAATA -3'

Sequencing Primer
(F):5'- TTGATCCCAGCATTCAGGAG -3'
(R):5'- TGTCCTTAAGCACAAGCC -3'

Posted On

2019-12-04