Mutagenetix > Incidental Mutation

Incidental Mutation 'RF013:Hsdl2'

603319

Institutional Source

Beutler Lab

Gene Symbol

Hsdl2

Ensembl Gene

ENSMUSG00000028383

Gene Name

hydroxysteroid dehydrogenase like 2

Synonyms

2610207I16Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

RF013 (G1)

Quality Score

217.468

Status

Not validated

Chromosome

Chromosomal Location

59581563-59618689 bp(+) (GRCm38)

Type of Mutation

small insertion (6 aa in frame mutation)

DNA Base Change (assembly)

AG to AGCAGCAGCCACAGCTGCCG at 59610657 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000103152 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030078] [ENSMUST00000107528]

AlphaFold

Q2TPA8

Predicted Effect

probably benign
Transcript: ENSMUST00000030078

SMART Domains

Protein: ENSMUSP00000030078
Gene: ENSMUSG00000028383

Domain	Start	End	E-Value	Type
Pfam:KR	11	142	6.3e-7	PFAM
Pfam:adh_short	11	209	2.9e-37	PFAM
Pfam:adh_short_C2	17	217	3.3e-11	PFAM
low complexity region	295	367	N/A	INTRINSIC
Pfam:SCP2	382	484	4.1e-28	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107528

SMART Domains

Protein: ENSMUSP00000103152
Gene: ENSMUSG00000028383

Domain	Start	End	E-Value	Type
PDB:3KVO\|B	1	174	1e-98	PDB
low complexity region	175	247	N/A	INTRINSIC
Pfam:SCP2	262	364	2.5e-28	PFAM

Coding Region Coverage

1x: 99.8%
3x: 99.7%
10x: 99.4%
20x: 98.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700019N19Rik	A	G	19: 58,789,294 (GRCm38)	F28S	probably damaging	Het
4930435E12Rik	T	C	16: 38,828,001 (GRCm38)	T249A	probably benign	Het
4932438A13Rik	TTAT	TTATTATTATTATTAGTAT	3: 37,050,757 (GRCm38)		probably benign	Het
Acap3	CCTGGGCTGCTG	CCTGGGCTGCTGCATACTGGGCTGCTG	4: 155,905,096 (GRCm38)		probably benign	Het
Adamts9	A	G	6: 92,943,145 (GRCm38)	V4A	possibly damaging	Het
AI837181	GGC	GGCTGC	19: 5,425,232 (GRCm38)		probably benign	Het
Alk	A	G	17: 71,895,936 (GRCm38)	Y1135H	probably damaging	Het
Ankhd1	CGGCGG	CGGCGGAGGCGG	18: 36,560,926 (GRCm38)		probably benign	Het
Ano3	A	C	2: 110,697,036 (GRCm38)	L609R	probably benign	Het
Bicc1	A	G	10: 70,935,830 (GRCm38)		probably null	Het
Card6	T	C	15: 5,100,142 (GRCm38)	I591V	probably benign	Het
Ccdc18	A	G	5: 108,220,716 (GRCm38)	N1235D	probably benign	Het
Cd109	TTAT	TTATTTATTTATCTAT	9: 78,712,531 (GRCm38)		probably benign	Het
Cnpy3	CCT	CCTGCT	17: 46,736,744 (GRCm38)		probably benign	Het
Col6a5	GCAGTC	GCAGTCTCCAGTC	9: 105,878,597 (GRCm38)		probably null	Het
Cyb5r4	GACACACTGCCCAGGGA	GACACACTGCCCAGGGATGTGACACACACACTGCCCAGGGA	9: 87,040,432 (GRCm38)		probably benign	Het
Cyp8b1	A	T	9: 121,915,495 (GRCm38)	M257K	possibly damaging	Het
Dbf4	A	T	5: 8,397,985 (GRCm38)	H408Q	possibly damaging	Het
Defb22	TTGCGGCA	TTGCGGCAGAGCTGGCCTGTGCGGCA	2: 152,485,831 (GRCm38)		probably benign	Het
Ercc6l2	A	T	13: 63,853,017 (GRCm38)	T417S	probably benign	Het
Exd2	AGCCACAG	A	12: 80,475,932 (GRCm38)		probably null	Het
Fam171b	GC	GCAGCATC	2: 83,812,895 (GRCm38)		probably benign	Het
Fam71e1	CCTGGGTCTGAGGGAGGA	CCTGGGTCTGAGGGAGGACGGCTGGATCCTGGATCACTGGGTCTGAGGGAGGA	7: 44,500,520 (GRCm38)		probably null	Het
Flvcr2	T	A	12: 85,747,186 (GRCm38)	L112Q	probably damaging	Het
Flywch1	GTG	GTGGGGGGAGGCTACGTACTCACCCACTCCTTTTG	17: 23,762,175 (GRCm38)		probably null	Het
Gabre	TCAGGCTCAGGCT	TCAGGCTCAGGCTCAGGCT	X: 72,270,416 (GRCm38)		probably benign	Het
Gm4884	C	A	7: 41,040,809 (GRCm38)	P43Q	probably damaging	Het
Gm6588	T	A	5: 112,450,071 (GRCm38)	N161K	probably benign	Het
Grm8	A	G	6: 27,363,780 (GRCm38)	W579R	probably damaging	Het
Ivl	CTGCTGCTGCTGCTGT	C	3: 92,572,343 (GRCm38)		probably benign	Het
Kif18b	T	C	11: 102,912,366 (GRCm38)	D506G	probably benign	Het
Krtap28-10	AGCCAC	AGCCACGGCCAC	1: 83,042,135 (GRCm38)		probably benign	Het
Krtap28-10	GCCACAGCCACCACA	GCCACAGCCACCACATCCACAGCCACCACA	1: 83,042,274 (GRCm38)		probably benign	Het
Lama1	C	A	17: 67,781,062 (GRCm38)	S1558R		Het
Lcmt1	C	CCGCGGGGCTT	7: 123,369,836 (GRCm38)		probably null	Het
Lmna	A	G	3: 88,484,054 (GRCm38)	V494A	probably benign	Het
Mapk6	CCAC	CCACCTCAC	9: 75,388,260 (GRCm38)		probably null	Het
Mboat7	T	A	7: 3,691,857 (GRCm38)	H52L	probably damaging	Het
Med12l	CAG	CAGAAG	3: 59,275,966 (GRCm38)		probably benign	Het
Morc2a	T	A	11: 3,676,191 (GRCm38)	M225K	probably benign	Het
Mpdz	G	A	4: 81,293,592 (GRCm38)	A1566V	possibly damaging	Het
Mpi	T	C	9: 57,548,641 (GRCm38)	D186G	probably benign	Het
Mtmr12	C	A	15: 12,261,898 (GRCm38)	N386K	probably damaging	Het
Myh3	ATTAC	ATTACTTAC	11: 67,086,356 (GRCm38)		probably null	Het
Myo10	T	A	15: 25,799,479 (GRCm38)	M1376K	probably damaging	Het
Nbas	C	T	12: 13,279,408 (GRCm38)	T118I	possibly damaging	Het
Nedd4l	C	T	18: 65,209,680 (GRCm38)	R755C	probably damaging	Het
Nefh	GACTTGGCCTCACCTGGG	GACTTGGCCTCACCTGGGTACTTGGCCTCACCTGGG	11: 4,941,032 (GRCm38)		probably benign	Het
Numa1	T	C	7: 101,999,780 (GRCm38)	L906P	probably damaging	Het
Olfr750	G	A	14: 51,071,012 (GRCm38)	A127V	probably damaging	Het
Olfr871	T	C	9: 20,212,894 (GRCm38)	S182P	probably benign	Het
Otop2	G	T	11: 115,323,666 (GRCm38)	R83L	probably benign	Het
Pmm1	T	A	15: 81,957,813 (GRCm38)	Q62L	probably damaging	Het
Pramef25	C	G	4: 143,948,908 (GRCm38)	Q449H	probably damaging	Het
Ptprj	A	T	2: 90,471,170 (GRCm38)	L206*	probably null	Het
Rassf6	TC	TCTGCCTCACTCATGGTCCTGTAGAGCATTGGGGATCC	5: 90,608,941 (GRCm38)		probably benign	Het
Rps19	A	AGAAAAT	7: 24,889,180 (GRCm38)		probably benign	Het
Rsrp1	T	A	4: 134,923,955 (GRCm38)	V10E	unknown	Het
Sh2d6	C	T	6: 72,516,388 (GRCm38)		probably null	Het
Six4	TG	T	12: 73,103,582 (GRCm38)		probably null	Het
Slc6a15	T	A	10: 103,400,216 (GRCm38)	V264D	probably damaging	Het
Snapc5	ATGGAAGAAGAGG	A	9: 64,182,211 (GRCm38)		probably benign	Het
Sost	A	T	11: 101,964,132 (GRCm38)	I117N	probably damaging	Het
Tbc1d22a	AGGTGTGTG	A	15: 86,299,774 (GRCm38)		probably null	Het
Tcaf1	C	T	6: 42,679,173 (GRCm38)	V290I	probably benign	Het
Tcof1	GCA	GCACCA	18: 60,835,743 (GRCm38)		probably benign	Het
Tgfbr1	A	G	4: 47,353,354 (GRCm38)	I15V	unknown	Het
Tmem241	A	T	18: 11,983,561 (GRCm38)	L288Q	probably damaging	Het
Tnfrsf13b	T	G	11: 61,141,444 (GRCm38)	V100G	probably benign	Het
Trim66	A	G	7: 109,460,753 (GRCm38)	S809P	probably damaging	Het
Tubb4a	C	G	17: 57,087,464 (GRCm38)	G17A	possibly damaging	Het
Txndc16	A	G	14: 45,169,338 (GRCm38)	V220A	probably benign	Het
Zan	T	A	5: 137,391,720 (GRCm38)	Q4830L	unknown	Het

Other mutations in Hsdl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00702:Hsdl2	APN	4	59,596,892 (GRCm38)	missense	probably benign	0.26
IGL00857:Hsdl2	APN	4	59,617,735 (GRCm38)	missense	probably benign	0.29
IGL01859:Hsdl2	APN	4	59,601,569 (GRCm38)	critical splice donor site	probably null
IGL02822:Hsdl2	APN	4	59,601,379 (GRCm38)	missense	possibly damaging	0.55
IGL03028:Hsdl2	APN	4	59,594,471 (GRCm38)	missense	probably damaging	0.98
IGL03275:Hsdl2	APN	4	59,617,747 (GRCm38)	makesense	probably null
R0217:Hsdl2	UTSW	4	59,597,311 (GRCm38)	missense	probably damaging	1.00
R0294:Hsdl2	UTSW	4	59,601,408 (GRCm38)	missense	probably benign	0.00
R0448:Hsdl2	UTSW	4	59,606,523 (GRCm38)	missense	unknown
R0490:Hsdl2	UTSW	4	59,612,814 (GRCm38)	splice site	probably benign
R1353:Hsdl2	UTSW	4	59,596,971 (GRCm38)	splice site	probably null
R1668:Hsdl2	UTSW	4	59,612,697 (GRCm38)	missense	probably damaging	1.00
R3933:Hsdl2	UTSW	4	59,597,274 (GRCm38)	missense	probably damaging	1.00
R4088:Hsdl2	UTSW	4	59,610,636 (GRCm38)	missense	unknown
R4247:Hsdl2	UTSW	4	59,594,417 (GRCm38)	missense	probably damaging	1.00
R4449:Hsdl2	UTSW	4	59,617,692 (GRCm38)	missense	possibly damaging	0.61
R4723:Hsdl2	UTSW	4	59,593,270 (GRCm38)	unclassified	probably benign
R4858:Hsdl2	UTSW	4	59,612,812 (GRCm38)	critical splice donor site	probably null
R5361:Hsdl2	UTSW	4	59,592,301 (GRCm38)	unclassified	probably benign
R6435:Hsdl2	UTSW	4	59,610,668 (GRCm38)	missense	unknown
R6525:Hsdl2	UTSW	4	59,612,696 (GRCm38)	missense	probably damaging	0.99
R6536:Hsdl2	UTSW	4	59,610,508 (GRCm38)	critical splice acceptor site	probably null
R7156:Hsdl2	UTSW	4	59,617,653 (GRCm38)	missense	possibly damaging	0.78
R7740:Hsdl2	UTSW	4	59,612,724 (GRCm38)	missense	probably damaging	0.99
R8087:Hsdl2	UTSW	4	59,592,228 (GRCm38)	missense	unknown
R8434:Hsdl2	UTSW	4	59,610,621 (GRCm38)	missense	unknown
R9512:Hsdl2	UTSW	4	59,594,464 (GRCm38)	nonsense	probably null
RF005:Hsdl2	UTSW	4	59,610,652 (GRCm38)	small insertion	probably benign
RF015:Hsdl2	UTSW	4	59,610,640 (GRCm38)	small insertion	probably benign
RF016:Hsdl2	UTSW	4	59,610,643 (GRCm38)	small insertion	probably benign
RF020:Hsdl2	UTSW	4	59,610,640 (GRCm38)	small insertion	probably benign
RF023:Hsdl2	UTSW	4	59,610,644 (GRCm38)	small insertion	probably benign
RF025:Hsdl2	UTSW	4	59,610,637 (GRCm38)	small insertion	probably benign
RF026:Hsdl2	UTSW	4	59,610,655 (GRCm38)	small insertion	probably benign
RF028:Hsdl2	UTSW	4	59,610,650 (GRCm38)	nonsense	probably null
RF030:Hsdl2	UTSW	4	59,610,647 (GRCm38)	small insertion	probably benign
RF038:Hsdl2	UTSW	4	59,610,648 (GRCm38)	small insertion	probably benign
RF049:Hsdl2	UTSW	4	59,610,651 (GRCm38)	small insertion	probably benign
RF049:Hsdl2	UTSW	4	59,610,633 (GRCm38)	small insertion	probably benign
RF051:Hsdl2	UTSW	4	59,610,650 (GRCm38)	small insertion	probably benign
RF051:Hsdl2	UTSW	4	59,610,636 (GRCm38)	small insertion	probably benign
RF056:Hsdl2	UTSW	4	59,610,647 (GRCm38)	frame shift	probably null
RF059:Hsdl2	UTSW	4	59,610,658 (GRCm38)	small insertion	probably benign
RF060:Hsdl2	UTSW	4	59,610,608 (GRCm38)	small insertion	probably benign
RF061:Hsdl2	UTSW	4	59,610,657 (GRCm38)	small insertion	probably benign
Z1176:Hsdl2	UTSW	4	59,617,706 (GRCm38)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GCTTATACTGCCAAAACTTTAAGGC -3'
(R):5'- GGGACATAGTCTTCACCTGAG -3'

Sequencing Primer
(F):5'- CTGCCAAAACTTTAAGGCTCTTTATG -3'
(R):5'- GGACATAGTCTTCACCTGAGAGTTC -3'

Posted On

2019-12-04