Incidental Mutation 'RF016:Jag1'
ID 603526
Institutional Source Beutler Lab
Gene Symbol Jag1
Ensembl Gene ENSMUSG00000027276
Gene Name jagged 1
Synonyms Serrate-1, ABE2, Gsfabe2, Ozz, Headturner, Htu
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # RF016 (G1)
Quality Score 225.009
Status Not validated
Chromosome 2
Chromosomal Location 136923371-136958440 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 136938176 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Serine at position 275 (T275S)
Ref Sequence ENSEMBL: ENSMUSP00000028735 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028735]
AlphaFold Q9QXX0
Predicted Effect probably benign
Transcript: ENSMUST00000028735
AA Change: T275S

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000028735
Gene: ENSMUSG00000027276
AA Change: T275S

DomainStartEndE-ValueType
signal peptide 1 30 N/A INTRINSIC
Pfam:MNNL 31 109 2.8e-31 PFAM
DSL 167 229 1.85e-37 SMART
EGF 233 263 1.66e1 SMART
EGF 264 294 2.25e1 SMART
EGF_CA 296 334 4.42e-7 SMART
EGF 339 372 2.64e-5 SMART
EGF_CA 374 410 2.89e-11 SMART
EGF_CA 412 448 2.8e-9 SMART
EGF_CA 450 485 2.31e-10 SMART
EGF_CA 487 523 1.69e-12 SMART
EGF_CA 525 561 4.19e-8 SMART
EGF 577 627 2.16e-1 SMART
EGF_CA 629 665 2.56e-12 SMART
EGF_CA 667 703 6.91e-9 SMART
EGF 708 741 5.88e-3 SMART
EGF 747 780 9.62e-8 SMART
EGF_CA 782 818 3.59e-7 SMART
EGF_CA 820 856 3.81e-11 SMART
VWC 863 930 4.79e-16 SMART
transmembrane domain 1069 1091 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.8%
  • 3x: 99.7%
  • 10x: 99.4%
  • 20x: 98.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The jagged 1 protein encoded by JAG1 is the human homolog of the Drosophilia jagged protein. Human jagged 1 is the ligand for the receptor notch 1, the latter a human homolog of the Drosophilia jagged receptor notch. Mutations that alter the jagged 1 protein cause Alagille syndrome. Jagged 1 signalling through notch 1 has also been shown to play a role in hematopoiesis. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mutants exhibit extensive hemorrhaging and die prior to embryonic day 11.5, while heterozygotes exhibit defects of the eye. Heterozygotes for missense mutations have inner ear abnormalities. Other mutant mice display abnormal head movements. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A030005L19Rik TGCTGTGGC TGCTGTGGCGGCTGTGGC 1: 82,891,298 (GRCm39) probably benign Het
Abi3bp GCCCACGACCC GCCCACGACCCACGACCC 16: 56,447,950 (GRCm39) probably null Het
Amer3 A G 1: 34,626,201 (GRCm39) I147V probably damaging Het
Ankhd1 GGCGGC GGCGGCAGCGGC 18: 36,693,962 (GRCm39) probably benign Het
Ankhd1 GCGGCG GCGGCGACGGCG 18: 36,693,963 (GRCm39) probably benign Het
Ankzf1 G A 1: 75,172,477 (GRCm39) R259H probably damaging Het
Apol9b T C 15: 77,619,714 (GRCm39) V170A probably benign Het
Asb3 A G 11: 31,011,407 (GRCm39) I267M possibly damaging Het
Baz2a A G 10: 127,961,185 (GRCm39) E1636G probably benign Het
Birc6 G T 17: 74,996,319 (GRCm39) V4513F probably damaging Het
Blm CCTCCTCC CCTCCTCCTCCTACTCCTCC 7: 80,162,674 (GRCm39) probably null Het
Ccdc113 G A 8: 96,264,733 (GRCm39) R81H probably benign Het
Ccdc27 T C 4: 154,120,567 (GRCm39) R410G probably benign Het
Cdhr5 A G 7: 140,852,097 (GRCm39) V435A possibly damaging Het
Cercam T C 2: 29,759,317 (GRCm39) S15P unknown Het
Cntrl T C 2: 35,009,998 (GRCm39) V224A probably benign Het
Comtd1 T A 14: 21,898,664 (GRCm39) Q56L probably benign Het
Cul9 CCT CCTACT 17: 46,811,789 (GRCm39) probably null Het
Cyb5r4 AGGGA AGGGATGGGACAGACCCACTGCCCCGGGA 9: 86,922,497 (GRCm39) probably benign Het
Cyb5r4 TGTGACAGACACACTGCCCAGGGA TGTGACAGACACACTGCCCAGGGACGTGACAGACACACTGCCCAGGGA 9: 86,922,478 (GRCm39) probably benign Het
Cyb5r4 CCCAGGGA CCCAGGGATGTGACAGACACACTGACCAGGGA 9: 86,922,494 (GRCm39) probably benign Het
Cyld T A 8: 89,432,069 (GRCm39) Y22* probably null Het
Dbt T C 3: 116,333,363 (GRCm39) Y278H probably damaging Het
Ddb1 A G 19: 10,605,222 (GRCm39) H1070R probably damaging Het
Dek G T 13: 47,251,662 (GRCm39) S248* probably null Het
Dixdc1 T C 9: 50,604,941 (GRCm39) T300A probably benign Het
Dusp8 A T 7: 141,636,589 (GRCm39) S334T probably benign Het
Efhd2 CCGCCG CCGCCGACGCCG 4: 141,602,067 (GRCm39) probably benign Het
Ehbp1 T C 11: 22,096,646 (GRCm39) N306S probably benign Het
Fcer1a T C 1: 173,053,086 (GRCm39) I37V possibly damaging Het
Fgfr2 G T 7: 129,779,410 (GRCm39) Q639K probably benign Het
Ftdc1 T A 16: 58,437,230 (GRCm39) N26I probably damaging Het
Gab3 CTT CTTATT X: 74,043,591 (GRCm39) probably null Het
Gins4 T C 8: 23,722,626 (GRCm39) M98V probably benign Het
Gm8369 GTGTGTGT GTGTGTGTTTGTGTGT 19: 11,489,118 (GRCm39) probably null Het
Grik1 G A 16: 87,831,074 (GRCm39) S232L Het
Gsg1l A G 7: 125,619,794 (GRCm39) probably null Het
H13 G A 2: 152,511,589 (GRCm39) E30K probably damaging Het
H2-DMb1 A T 17: 34,376,360 (GRCm39) S160C probably damaging Het
Hsdl2 GCAGCCACAGCTGCAG GCAGCCACAGCTGCAGCATCAGCCACAGCTGCAG 4: 59,610,643 (GRCm39) probably benign Het
Iqcf4 TTTCCTTTTCCTTTT TTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTGTTCCTTTTCCTTTT 9: 106,447,808 (GRCm39) probably benign Het
Klhdc2 T A 12: 69,350,660 (GRCm39) I158K probably damaging Het
Krtap28-10 TCCC TCCCGCACCC 1: 83,019,844 (GRCm39) probably benign Het
Lrp2 T A 2: 69,339,549 (GRCm39) M1121L probably benign Het
M6pr C T 6: 122,292,124 (GRCm39) A152V probably damaging Het
Mapkapk5 T C 5: 121,671,379 (GRCm39) Y218C probably damaging Het
Mkrn1 C T 6: 39,396,925 (GRCm39) V26I Het
Mro CA CAAACTCGGA 18: 74,003,035 (GRCm39) probably null Het
Mrpl3 T C 9: 104,952,452 (GRCm39) V303A probably benign Het
Nefh CTCACCTGGGGACTTGGCCTCACCTGGGGACTTGGCCTC CTCACCTGGGGACTTGGCCTCACCTGGGGACTTGGCCTCACCTGGGGACTTGGCCTC 11: 4,891,022 (GRCm39) probably benign Het
Nefh TCACCTGGGGACT TCACCTGGGGACTCGGCCCCACCTGGGGACT 11: 4,891,023 (GRCm39) probably benign Het
Nid2 GGCTAACACCGC GGC 14: 19,801,431 (GRCm39) probably benign Het
Nusap1 CAAGCTGAGA CAAGCTGAGATACACGTTAGCAGTGAGGAGAAAGCTGAGA 2: 119,458,082 (GRCm39) probably benign Het
Or10n7-ps1 A ATAGG 9: 39,598,050 (GRCm39) probably null Het
Or6d12 G T 6: 116,493,004 (GRCm39) A89S probably benign Het
Ovol1 A G 19: 5,603,640 (GRCm39) V87A probably benign Het
Pdpk1 T A 17: 24,312,255 (GRCm39) E290D probably benign Het
Pkd1l3 T A 8: 110,350,174 (GRCm39) S340T probably benign Het
Pknox2 ACACACACACACACACTCAC ACAC 9: 36,820,905 (GRCm39) probably benign Het
Pou3f1 GC GCGGCGCC 4: 124,551,602 (GRCm39) probably benign Het
Prp2 AGCGACCCCCTCAAGGCCCACCACCACCAGGTGGCCCACAGCCGAGACCCCCTCAAGGCCCACCACC AGAGACCCCCTCAAGGCCCACCACC 6: 132,577,475 (GRCm39) probably benign Het
Prpf6 A G 2: 181,273,869 (GRCm39) M338V probably benign Het
Psg28 G T 7: 18,156,847 (GRCm39) L463I probably damaging Het
Ptprd T C 4: 76,046,892 (GRCm39) D211G probably benign Het
Pus1 T C 5: 110,924,424 (GRCm39) H160R not run Het
Ranbp17 T C 11: 33,279,511 (GRCm39) T582A probably damaging Het
Rasa1 G A 13: 85,371,607 (GRCm39) T878I possibly damaging Het
Rbm20 A G 19: 53,802,163 (GRCm39) T224A probably benign Het
Scgb1b12 A T 7: 32,033,920 (GRCm39) N60I probably damaging Het
Sh3bp4 T C 1: 89,072,744 (GRCm39) S531P probably benign Het
Sh3pxd2b TGCCTG TGCCTGCGCCTG 11: 32,373,053 (GRCm39) probably benign Het
Snrnp200 T C 2: 127,072,476 (GRCm39) L1291P probably damaging Het
Spmap2l CTCCCCAGTCCCGCAAGGCCAG CTCCCCAGTCCCGCAAGGCCAGCGATCATCCCCAGTCCCGCAAGGCCAG 5: 77,164,255 (GRCm39) probably benign Het
Sppl2a C T 2: 126,769,694 (GRCm39) R54Q probably benign Het
Sulf2 A T 2: 165,924,523 (GRCm39) L521Q probably benign Het
Supv3l1 C A 10: 62,273,287 (GRCm39) V317F possibly damaging Het
Tcof1 TCC TCCACTTGGCTGCTGAGATGGGCACTTTCCCAGAGACCC 18: 60,966,647 (GRCm39) probably benign Het
Trappc9 TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT TGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT 15: 72,673,138 (GRCm39) probably benign Het
Unc13b CAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGC CAGAGCCAGAGCCAGAGCGAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGC 4: 43,177,347 (GRCm39) probably benign Het
Unc13b AGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGC AGCCAGAGCCAGAGCCAGCGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGC 4: 43,177,350 (GRCm39) probably benign Het
Usp38 A G 8: 81,740,522 (GRCm39) S182P probably benign Het
Vmn2r24 T C 6: 123,781,174 (GRCm39) V460A probably benign Het
Wdr97 A T 15: 76,240,172 (GRCm39) I331F Het
Zfp598 CAACCAC CAACCACAACCAC 17: 24,899,745 (GRCm39) probably benign Het
Other mutations in Jag1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00163:Jag1 APN 2 136,927,952 (GRCm39) critical splice acceptor site probably null
IGL00912:Jag1 APN 2 136,957,493 (GRCm39) missense probably damaging 1.00
IGL01104:Jag1 APN 2 136,926,298 (GRCm39) missense probably benign 0.40
IGL01529:Jag1 APN 2 136,926,897 (GRCm39) missense probably damaging 0.99
IGL01578:Jag1 APN 2 136,941,971 (GRCm39) splice site probably benign
IGL01720:Jag1 APN 2 136,929,023 (GRCm39) missense probably damaging 1.00
IGL01809:Jag1 APN 2 136,957,404 (GRCm39) missense probably damaging 1.00
IGL02402:Jag1 APN 2 136,927,858 (GRCm39) missense possibly damaging 0.79
IGL02434:Jag1 APN 2 136,929,075 (GRCm39) missense probably benign 0.01
IGL02543:Jag1 APN 2 136,933,867 (GRCm39) splice site probably benign
IGL02650:Jag1 APN 2 136,957,505 (GRCm39) missense possibly damaging 0.95
IGL03010:Jag1 APN 2 136,935,118 (GRCm39) splice site probably benign
IGL03102:Jag1 APN 2 136,926,608 (GRCm39) missense probably benign 0.00
Grenville UTSW 2 136,929,062 (GRCm39) missense probably damaging 1.00
PIT4651001:Jag1 UTSW 2 136,943,617 (GRCm39) missense probably damaging 1.00
R0227:Jag1 UTSW 2 136,957,538 (GRCm39) missense probably benign
R0306:Jag1 UTSW 2 136,927,855 (GRCm39) missense probably damaging 1.00
R0325:Jag1 UTSW 2 136,937,365 (GRCm39) critical splice donor site probably null
R0594:Jag1 UTSW 2 136,929,000 (GRCm39) missense probably damaging 0.99
R0838:Jag1 UTSW 2 136,935,198 (GRCm39) missense probably damaging 0.98
R0879:Jag1 UTSW 2 136,942,001 (GRCm39) missense possibly damaging 0.80
R0900:Jag1 UTSW 2 136,932,802 (GRCm39) frame shift probably null
R0972:Jag1 UTSW 2 136,925,371 (GRCm39) missense possibly damaging 0.64
R1083:Jag1 UTSW 2 136,938,152 (GRCm39) missense probably damaging 0.99
R1182:Jag1 UTSW 2 136,933,409 (GRCm39) missense probably benign 0.36
R1292:Jag1 UTSW 2 136,925,393 (GRCm39) missense possibly damaging 0.79
R1464:Jag1 UTSW 2 136,957,568 (GRCm39) missense probably damaging 0.98
R1464:Jag1 UTSW 2 136,957,568 (GRCm39) missense probably damaging 0.98
R1500:Jag1 UTSW 2 136,957,558 (GRCm39) missense possibly damaging 0.82
R1936:Jag1 UTSW 2 136,925,393 (GRCm39) missense possibly damaging 0.79
R1937:Jag1 UTSW 2 136,925,393 (GRCm39) missense possibly damaging 0.79
R1939:Jag1 UTSW 2 136,925,393 (GRCm39) missense possibly damaging 0.79
R1998:Jag1 UTSW 2 136,932,858 (GRCm39) missense probably damaging 1.00
R2019:Jag1 UTSW 2 136,926,599 (GRCm39) missense probably benign 0.37
R2213:Jag1 UTSW 2 136,931,812 (GRCm39) missense probably benign 0.01
R2300:Jag1 UTSW 2 136,938,235 (GRCm39) missense probably damaging 1.00
R2484:Jag1 UTSW 2 136,926,620 (GRCm39) missense possibly damaging 0.86
R4179:Jag1 UTSW 2 136,943,578 (GRCm39) missense probably damaging 0.99
R4212:Jag1 UTSW 2 136,926,990 (GRCm39) missense probably benign
R4630:Jag1 UTSW 2 136,927,899 (GRCm39) missense probably damaging 1.00
R4701:Jag1 UTSW 2 136,936,376 (GRCm39) missense probably benign 0.11
R4705:Jag1 UTSW 2 136,938,229 (GRCm39) missense probably damaging 1.00
R4904:Jag1 UTSW 2 136,929,062 (GRCm39) missense probably damaging 1.00
R5050:Jag1 UTSW 2 136,927,074 (GRCm39) missense possibly damaging 0.71
R5288:Jag1 UTSW 2 136,937,464 (GRCm39) missense possibly damaging 0.75
R5367:Jag1 UTSW 2 136,927,014 (GRCm39) missense possibly damaging 0.90
R5385:Jag1 UTSW 2 136,937,464 (GRCm39) missense possibly damaging 0.75
R5386:Jag1 UTSW 2 136,937,464 (GRCm39) missense possibly damaging 0.75
R5430:Jag1 UTSW 2 136,943,626 (GRCm39) missense possibly damaging 0.94
R5472:Jag1 UTSW 2 136,926,915 (GRCm39) missense probably damaging 1.00
R5755:Jag1 UTSW 2 136,930,610 (GRCm39) missense probably damaging 1.00
R5764:Jag1 UTSW 2 136,931,167 (GRCm39) missense probably damaging 1.00
R5804:Jag1 UTSW 2 136,930,124 (GRCm39) missense probably benign 0.01
R6406:Jag1 UTSW 2 136,929,563 (GRCm39) missense probably damaging 1.00
R6503:Jag1 UTSW 2 136,943,549 (GRCm39) missense probably damaging 1.00
R6721:Jag1 UTSW 2 136,936,394 (GRCm39) missense probably benign 0.00
R6826:Jag1 UTSW 2 136,958,095 (GRCm39) critical splice donor site probably null
R7055:Jag1 UTSW 2 136,957,409 (GRCm39) missense probably benign 0.26
R7214:Jag1 UTSW 2 136,948,802 (GRCm39) missense probably benign 0.00
R7359:Jag1 UTSW 2 136,926,226 (GRCm39) missense probably benign
R7422:Jag1 UTSW 2 136,926,975 (GRCm39) missense probably benign
R7919:Jag1 UTSW 2 136,930,366 (GRCm39) missense probably damaging 0.97
R8071:Jag1 UTSW 2 136,943,717 (GRCm39) missense probably benign 0.01
R8768:Jag1 UTSW 2 136,932,708 (GRCm39) intron probably benign
R8768:Jag1 UTSW 2 136,943,521 (GRCm39) missense possibly damaging 0.89
R8898:Jag1 UTSW 2 136,935,175 (GRCm39) missense probably damaging 1.00
R8920:Jag1 UTSW 2 136,931,143 (GRCm39) missense probably benign 0.05
R9060:Jag1 UTSW 2 136,931,204 (GRCm39) missense probably damaging 1.00
R9120:Jag1 UTSW 2 136,930,354 (GRCm39) missense probably benign
R9193:Jag1 UTSW 2 136,931,764 (GRCm39) missense probably null 0.99
R9200:Jag1 UTSW 2 136,929,044 (GRCm39) missense probably benign 0.04
R9241:Jag1 UTSW 2 136,926,507 (GRCm39) missense probably damaging 1.00
R9326:Jag1 UTSW 2 136,931,745 (GRCm39) missense probably benign
R9334:Jag1 UTSW 2 136,943,593 (GRCm39) missense probably damaging 1.00
R9358:Jag1 UTSW 2 136,924,948 (GRCm39) missense probably benign 0.26
R9444:Jag1 UTSW 2 136,936,397 (GRCm39) missense probably damaging 1.00
R9477:Jag1 UTSW 2 136,936,409 (GRCm39) missense probably damaging 1.00
Z1088:Jag1 UTSW 2 136,927,071 (GRCm39) missense probably benign 0.03
Z1177:Jag1 UTSW 2 136,926,939 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- GCACTAACATCTCAGAGGACCTG -3'
(R):5'- CACTTTGGGCCAACTGTGAG -3'

Sequencing Primer
(F):5'- CCTGGAAGACAGTACTTTGCTAGC -3'
(R):5'- GAGGTTACTCATACAGAACCCTGTG -3'
Posted On 2019-12-04