Mutagenetix > Incidental Mutation

Incidental Mutation 'RF018:Rpa1'

603693

Institutional Source

Beutler Lab

Gene Symbol

Rpa1

Ensembl Gene

ENSMUSG00000000751

Gene Name

replication protein A1

Synonyms

5031405K23Rik, Rpa, RF-A, 70kDa, RP-A

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

RF018 (G1)

Quality Score

217.468

Status

Not validated

Chromosome

Chromosomal Location

75191085-75239478 bp(-) (GRCm39)

Type of Mutation

frame shift

DNA Base Change (assembly)

GCTGCTGCC to GC at 75209343 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000000767 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000000767] [ENSMUST00000092907]

AlphaFold

Q8VEE4

Predicted Effect

probably null
Transcript: ENSMUST00000000767

SMART Domains

Protein: ENSMUSP00000000767
Gene: ENSMUSG00000000751

Domain	Start	End	E-Value	Type
Pfam:Rep-A_N	5	93	7.2e-30	PFAM
low complexity region	145	175	N/A	INTRINSIC
Pfam:tRNA_anti-codon	227	316	5e-13	PFAM
Pfam:REPA_OB_2	335	432	5e-37	PFAM
Pfam:Rep_fac-A_C	491	636	4.5e-57	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000092907

SMART Domains

Protein: ENSMUSP00000090585
Gene: ENSMUSG00000000751

Domain	Start	End	E-Value	Type
Pfam:Rep-A_N	5	104	4.3e-35	PFAM
low complexity region	124	154	N/A	INTRINSIC
Pfam:tRNA_anti-codon	206	295	8.4e-13	PFAM
SCOP:d1fgua2	308	435	8e-46	SMART
Pfam:Rep_fac-A_C	470	615	9.2e-56	PFAM

Coding Region Coverage

1x: 99.8%
3x: 99.7%
10x: 99.3%
20x: 98.6%

Validation Efficiency

100% (54/54)

MGI Phenotype

PHENOTYPE: Homozygous null mice display embryonic lethality before implantation and impaired cell proliferation. Heterozygous null mice display decreased survival, chromosomal instability, impaired double strand break repair, and develop lymphomas. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A030005L19Rik	GTGGCTGCT	GTGGCTGCTTTGGCTGCT	1: 82,891,293 (GRCm39)		probably benign	Het
Abca15	T	A	7: 119,993,683 (GRCm39)	V1301E	possibly damaging	Het
Adcy10	T	A	1: 165,379,678 (GRCm39)	V980E	probably damaging	Het
Aldh1a2	T	C	9: 71,192,552 (GRCm39)	V469A	probably damaging	Het
Alk	T	A	17: 72,256,808 (GRCm39)	T684S	probably benign	Het
Ankhd1	GGCGGC	GGCGGCAGCGGC	18: 36,693,965 (GRCm39)		probably benign	Het
Anks1b	G	A	10: 89,869,087 (GRCm39)	G49D	probably damaging	Het
Blm	CCTCCTCC	CCTCCTCCTCCTACTCCTCC	7: 80,162,674 (GRCm39)		probably null	Het
Btnl10	CAAA	CAAAAAA	11: 58,814,752 (GRCm39)		probably benign	Het
Ccdc81	C	A	7: 89,515,906 (GRCm39)		probably null	Het
Cd209g	A	G	8: 4,187,398 (GRCm39)	Y194C	probably benign	Het
Cenpc1	A	T	5: 86,193,228 (GRCm39)	S220R	possibly damaging	Het
Ddx42	A	T	11: 106,123,630 (GRCm39)		probably null	Het
Dock4	GTGCCGGTGCCCGT	G	12: 40,894,398 (GRCm39)		probably null	Het
Eif5b	A	T	1: 38,060,673 (GRCm39)		probably null	Het
Ell2	C	A	13: 75,911,727 (GRCm39)	H338N	probably damaging	Het
Entpd2	CTT	CTTT	2: 25,290,907 (GRCm39)		probably null	Het
Flywch1	CCACTCCTGGTGT	CCACTCCTGGTGTGGGGAGGCTACGTACTCACGCACTCCTGGTGT	17: 23,981,140 (GRCm39)		probably null	Het
Gm8369	GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	19: 11,489,106 (GRCm39)		probably null	Het
Gnat2	T	C	3: 108,003,645 (GRCm39)	S107P	unknown	Het
Guk1	T	A	11: 59,077,234 (GRCm39)	D70V	probably benign	Het
Itpkb	C	T	1: 180,160,887 (GRCm39)	R338W	probably damaging	Het
Krtap28-10	ACCACAGCCACAGCCACCACAGCCACAGCC	ACCACAGCCACAGCCCCCACAGCCACAGCCACCACAGCCACAGCC	1: 83,019,974 (GRCm39)		probably benign	Het
Lamp3	A	C	16: 19,520,000 (GRCm39)	I61R	probably benign	Het
Lrch1	GCTGGTGGTGT	G	14: 75,184,995 (GRCm39)		probably null	Het
Lrp1b	C	T	2: 41,000,919 (GRCm39)	E2216K		Het
Lrrc27	A	G	7: 138,806,016 (GRCm39)	D227G	probably benign	Het
Lrrk1	C	T	7: 66,031,250 (GRCm39)	G16E	possibly damaging	Het
Lrrtm1	T	A	6: 77,221,334 (GRCm39)	S264T	possibly damaging	Het
Lypd8	CCAATCACCAACA	CCAATCACCAACAGTTTCCTCGCCTCTGTTACCCCACCAATCACCAACA	11: 58,281,058 (GRCm39)		probably benign	Het
Mamld1	CAG	CAGAAG	X: 70,162,455 (GRCm39)		probably benign	Het
Mpo	G	C	11: 87,688,465 (GRCm39)	A375P	probably damaging	Het
Myo9a	A	G	9: 59,776,869 (GRCm39)	H1089R	probably benign	Het
Nalf2	CGCCGC	CGCCGCTGCCGC	X: 98,864,967 (GRCm39)		probably benign	Het
Ndufc2	T	C	7: 97,056,228 (GRCm39)	*109Q	probably null	Het
Nudt16	A	T	9: 105,008,898 (GRCm39)	Y28N	probably damaging	Het
Nudt4	A	T	10: 95,385,675 (GRCm39)		probably null	Het
Nusap1	AGATACACGTTAGCAGTGAGGAGCAAGCTG	AGATACACGTTAGCAGTGAGGAGCAAGCTGCGATACACGTTAGCAGTGAGGAGCAAGCTG	2: 119,458,059 (GRCm39)		probably benign	Het
Or2ag15	T	A	7: 106,340,692 (GRCm39)	I150F	probably benign	Het
P2ry12	T	A	3: 59,124,833 (GRCm39)	T281S	probably benign	Het
P4ha2	TGTTGG	T	11: 54,001,072 (GRCm39)		probably null	Het
Pcnx2	A	G	8: 126,604,258 (GRCm39)	V666A	probably damaging	Het
Pde6a	T	A	18: 61,364,475 (GRCm39)	I177N	possibly damaging	Het
Pgm1	A	T	4: 99,819,500 (GRCm39)		probably null	Het
Plce1	T	A	19: 38,705,651 (GRCm39)	W1019R	probably damaging	Het
Plch1	C	A	3: 63,628,636 (GRCm39)	K542N	probably damaging	Het
Plekhj1	T	C	10: 80,632,471 (GRCm39)	Q113R	not run	Het
Postn	A	T	3: 54,291,913 (GRCm39)	I705F	probably damaging	Het
Ppp1r15b	G	T	1: 133,059,352 (GRCm39)		probably benign	Het
Prkab1	T	C	5: 116,159,689 (GRCm39)	E59G	probably damaging	Het
Qrfprl	T	A	6: 65,433,174 (GRCm39)	Y331*	probably null	Het
Raph1	GG	GGGGG	1: 60,528,426 (GRCm39)		probably benign	Het
Rassf6	AGCAATGGGGATTC	AGCAATGGGGATTCTGCCTCACTCATGGTCCTGTAGCGCAATGGGGATTC	5: 90,756,788 (GRCm39)		probably benign	Het
Rnf144a	TCTC	TCTCTCTCTCTCTCTCACTC	12: 26,364,013 (GRCm39)		probably benign	Het
Ros1	T	A	10: 52,031,217 (GRCm39)	M484L	probably benign	Het
Sectm1b	A	G	11: 120,945,756 (GRCm39)	V195A	probably benign	Het
Sirpa	TCATCAG	T	2: 129,451,123 (GRCm39)		probably null	Het
Slc28a1	T	A	7: 80,819,032 (GRCm39)		probably null	Het
Sphk1	G	C	11: 116,425,771 (GRCm39)	S42T	possibly damaging	Het
Spta1	T	C	1: 174,036,885 (GRCm39)	L1132P	probably damaging	Het
Srrt	A	T	5: 137,298,262 (GRCm39)	N303K	probably benign	Het
Ssh2	A	G	11: 77,344,880 (GRCm39)	E955G	probably damaging	Het
Strn	CCAGTC	CCAGTCCGTGCTCCCTTACCCCAGTCCGTGCTCCCTTACCACAGTC	17: 78,984,712 (GRCm39)		probably null	Het
Tchhl1	T	C	3: 93,377,691 (GRCm39)	F132L	probably benign	Het
Tex14	A	G	11: 87,405,572 (GRCm39)	E828G	probably benign	Het
Tfeb	CAG	CAGGAG	17: 48,097,020 (GRCm39)		probably benign	Het
Tmtc1	T	C	6: 148,149,009 (GRCm39)	Y699C	probably damaging	Het
Ubn1	A	G	16: 4,882,256 (GRCm39)	Y239C	probably damaging	Het
Vmn2r23	T	G	6: 123,690,075 (GRCm39)	L317R	probably benign	Het
Vmn2r78	C	T	7: 86,603,639 (GRCm39)	R606*	probably null	Het
Vps72	T	G	3: 95,028,719 (GRCm39)		probably null	Het
Zc3h11a	A	G	1: 133,554,853 (GRCm39)	S376P	possibly damaging	Het
Zfp384	GCCCAGGC	GCCCAGGCCCAGTCCCAGGC	6: 125,013,452 (GRCm39)		probably benign	Het
Zfp598	CAACCAC	CAACCACAACCAC	17: 24,899,745 (GRCm39)		probably benign	Het
Zfp628	TACTCCTCCACCC	T	7: 4,923,948 (GRCm39)		probably benign	Het

Other mutations in Rpa1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01296:Rpa1	APN	11	75,203,141 (GRCm39)	missense	probably damaging	1.00
IGL01347:Rpa1	APN	11	75,198,111 (GRCm39)	missense	probably damaging	1.00
IGL02976:Rpa1	APN	11	75,203,628 (GRCm39)	missense	probably damaging	0.99
IGL03169:Rpa1	APN	11	75,192,183 (GRCm39)	missense	probably damaging	0.97
nonnae	UTSW	11	75,205,721 (GRCm39)	missense	probably damaging	1.00
vomica	UTSW	11	75,231,171 (GRCm39)	missense	possibly damaging	0.89
FR4976:Rpa1	UTSW	11	75,209,345 (GRCm39)	small deletion	probably benign
PIT4576001:Rpa1	UTSW	11	75,203,984 (GRCm39)	missense	probably damaging	1.00
R0017:Rpa1	UTSW	11	75,205,687 (GRCm39)	missense	probably null	1.00
R0017:Rpa1	UTSW	11	75,205,687 (GRCm39)	missense	probably null	1.00
R0126:Rpa1	UTSW	11	75,209,355 (GRCm39)	missense	probably benign	0.00
R0240:Rpa1	UTSW	11	75,219,513 (GRCm39)	missense	probably benign	0.01
R0240:Rpa1	UTSW	11	75,219,513 (GRCm39)	missense	probably benign	0.01
R0465:Rpa1	UTSW	11	75,203,921 (GRCm39)	missense	probably damaging	0.99
R0718:Rpa1	UTSW	11	75,209,227 (GRCm39)	splice site	probably benign
R0973:Rpa1	UTSW	11	75,203,799 (GRCm39)	splice site	probably null
R1055:Rpa1	UTSW	11	75,193,558 (GRCm39)	missense	probably damaging	1.00
R1172:Rpa1	UTSW	11	75,203,219 (GRCm39)	missense	probably damaging	1.00
R1642:Rpa1	UTSW	11	75,203,517 (GRCm39)	critical splice donor site	probably null
R1883:Rpa1	UTSW	11	75,209,309 (GRCm39)	missense	probably benign
R1975:Rpa1	UTSW	11	75,197,002 (GRCm39)	missense	probably damaging	1.00
R5008:Rpa1	UTSW	11	75,204,125 (GRCm39)	critical splice donor site	probably null
R5279:Rpa1	UTSW	11	75,204,170 (GRCm39)	missense	probably damaging	0.96
R6083:Rpa1	UTSW	11	75,205,737 (GRCm39)	missense	probably damaging	1.00
R6161:Rpa1	UTSW	11	75,205,721 (GRCm39)	missense	probably damaging	1.00
R6187:Rpa1	UTSW	11	75,201,062 (GRCm39)	missense	probably benign	0.00
R6762:Rpa1	UTSW	11	75,231,171 (GRCm39)	missense	possibly damaging	0.89
R6828:Rpa1	UTSW	11	75,205,697 (GRCm39)	missense	probably damaging	1.00
R7044:Rpa1	UTSW	11	75,203,628 (GRCm39)	missense	probably damaging	0.99
R7331:Rpa1	UTSW	11	75,203,941 (GRCm39)	missense	probably damaging	0.98
R7798:Rpa1	UTSW	11	75,203,635 (GRCm39)	missense	probably damaging	0.96
R7890:Rpa1	UTSW	11	75,198,050 (GRCm39)	frame shift	probably null
R7938:Rpa1	UTSW	11	75,198,050 (GRCm39)	frame shift	probably null
R8116:Rpa1	UTSW	11	75,193,501 (GRCm39)	missense	possibly damaging	0.90
R8258:Rpa1	UTSW	11	75,193,550 (GRCm39)	missense	probably benign	0.03
R8259:Rpa1	UTSW	11	75,193,550 (GRCm39)	missense	probably benign	0.03
R8837:Rpa1	UTSW	11	75,204,167 (GRCm39)	missense	possibly damaging	0.70
R9169:Rpa1	UTSW	11	75,200,999 (GRCm39)	nonsense	probably null
R9789:Rpa1	UTSW	11	75,203,938 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TCAGGCTCAGTGAATTTTCAAACAC -3'
(R):5'- GCACTTGAGAGACAATTGAACTG -3'

Sequencing Primer
(F):5'- CTCAGTGAATTTTCAAACACTGCTTC -3'
(R):5'- GGAACCAGTCTTTACTATGCGCAG -3'

Posted On

2019-12-04