Incidental Mutation 'RF055:Dmkn'
| ID |
605234 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dmkn
|
| Ensembl Gene |
ENSMUSG00000060962 |
| Gene Name |
dermokine |
| Synonyms |
dermokine, sk30, sk89, Dmkn, cI-36, 1110014F24Rik |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.065)
|
| Stock # |
RF055 (G1)
|
| Quality Score |
217.468 |
|
Status
|
Not validated
|
| Chromosome |
7 |
| Chromosomal Location |
30463181-30480488 bp(+) (GRCm39) |
| Type of Mutation |
small insertion (9 aa in frame mutation) |
| DNA Base Change (assembly) |
GTGGTGGAAGTGGTGG to GTGGTGGAAGTGGTGGAAGTTGTGGAATTGGTGGAAGTGGTGG
at 30466616 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000140196
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000054427]
[ENSMUST00000085688]
[ENSMUST00000085691]
[ENSMUST00000165887]
[ENSMUST00000188578]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000054427
|
| SMART Domains |
Protein: ENSMUSP00000060362
Gene: ENSMUSG00000060962
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
|
internal_repeat_3
|
22 |
50 |
5.96e-5 |
PROSPERO |
|
internal_repeat_2
|
25 |
53 |
3.87e-5 |
PROSPERO |
|
internal_repeat_2
|
45 |
73 |
3.87e-5 |
PROSPERO |
|
internal_repeat_3
|
65 |
94 |
5.96e-5 |
PROSPERO |
|
low complexity region
|
123 |
151 |
N/A |
INTRINSIC |
|
low complexity region
|
161 |
176 |
N/A |
INTRINSIC |
|
low complexity region
|
211 |
290 |
N/A |
INTRINSIC |
|
low complexity region
|
312 |
331 |
N/A |
INTRINSIC |
|
low complexity region
|
347 |
359 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
387 |
414 |
3.28e-7 |
PROSPERO |
|
internal_repeat_1
|
422 |
449 |
3.28e-7 |
PROSPERO |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000085688
|
| SMART Domains |
Protein: ENSMUSP00000082831
Gene: ENSMUSG00000060962
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
|
internal_repeat_3
|
22 |
50 |
6.61e-5 |
PROSPERO |
|
internal_repeat_2
|
25 |
53 |
4.31e-5 |
PROSPERO |
|
internal_repeat_2
|
45 |
73 |
4.31e-5 |
PROSPERO |
|
internal_repeat_3
|
65 |
94 |
6.61e-5 |
PROSPERO |
|
low complexity region
|
123 |
151 |
N/A |
INTRINSIC |
|
low complexity region
|
161 |
176 |
N/A |
INTRINSIC |
|
low complexity region
|
211 |
308 |
N/A |
INTRINSIC |
|
low complexity region
|
323 |
335 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
363 |
390 |
3.84e-7 |
PROSPERO |
|
internal_repeat_1
|
398 |
425 |
3.84e-7 |
PROSPERO |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000085691
|
| SMART Domains |
Protein: ENSMUSP00000082834
Gene: ENSMUSG00000060962
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
|
internal_repeat_3
|
22 |
50 |
6.12e-5 |
PROSPERO |
|
internal_repeat_2
|
25 |
53 |
3.97e-5 |
PROSPERO |
|
internal_repeat_2
|
45 |
73 |
3.97e-5 |
PROSPERO |
|
internal_repeat_3
|
65 |
94 |
6.12e-5 |
PROSPERO |
|
low complexity region
|
123 |
151 |
N/A |
INTRINSIC |
|
low complexity region
|
161 |
176 |
N/A |
INTRINSIC |
|
low complexity region
|
211 |
290 |
N/A |
INTRINSIC |
|
low complexity region
|
300 |
322 |
N/A |
INTRINSIC |
|
low complexity region
|
338 |
350 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
378 |
405 |
3.43e-7 |
PROSPERO |
|
internal_repeat_1
|
413 |
440 |
3.43e-7 |
PROSPERO |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000165887
|
| SMART Domains |
Protein: ENSMUSP00000129031
Gene: ENSMUSG00000060962
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
|
internal_repeat_2
|
25 |
53 |
9.56e-5 |
PROSPERO |
|
internal_repeat_2
|
45 |
73 |
9.56e-5 |
PROSPERO |
|
low complexity region
|
123 |
151 |
N/A |
INTRINSIC |
|
low complexity region
|
161 |
176 |
N/A |
INTRINSIC |
|
low complexity region
|
211 |
290 |
N/A |
INTRINSIC |
|
low complexity region
|
300 |
322 |
N/A |
INTRINSIC |
|
low complexity region
|
338 |
349 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
394 |
421 |
1.01e-6 |
PROSPERO |
|
internal_repeat_1
|
429 |
456 |
1.01e-6 |
PROSPERO |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000188578
|
| SMART Domains |
Protein: ENSMUSP00000140196
Gene: ENSMUSG00000060962
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
5 |
102 |
N/A |
INTRINSIC |
|
low complexity region
|
117 |
128 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
173 |
200 |
3.77e-7 |
PROSPERO |
|
internal_repeat_1
|
208 |
235 |
3.77e-7 |
PROSPERO |
|
| Coding Region Coverage |
- 1x: 99.8%
- 3x: 99.7%
- 10x: 99.3%
- 20x: 98.6%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is upregulated in inflammatory diseases, and it was first observed as expressed in the differentiated layers of skin. The most interesting aspect of this gene is the differential use of promoters and terminators to generate isoforms with unique cellular distributions and domain components. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. [provided by RefSeq, Jun 2010]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 35 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| B430218F22Rik |
GGCGGCGGCGGCG |
GGCGGCGGCGGCGGCGGCG |
13: 118,523,385 (GRCm39) |
|
probably benign |
Het |
| Bhlhb9 |
C |
T |
X: 134,791,239 (GRCm39) |
L484F |
possibly damaging |
Het |
| Bltp1 |
TTAT |
TTATTATTATTATTAGTAT |
3: 37,104,906 (GRCm39) |
|
probably benign |
Het |
| Cul1 |
A |
T |
6: 47,494,067 (GRCm39) |
D460V |
probably damaging |
Het |
| Cyb5r4 |
CTGCCCAGGGATGTGACAGACACA |
CTGCCCAGGGATGTGACAGACACAATGCCCAGGGATGTGACAGACACA |
9: 86,922,467 (GRCm39) |
|
probably benign |
Het |
| Cyb5r4 |
CT |
CTTCCCAGGGATGTGACAGACACATT |
9: 86,922,491 (GRCm39) |
|
probably benign |
Het |
| Dnmt1 |
CACAGTTCCTACCTCGTT |
CACAGTTCCTACCTCGTTTTGGGGGCGGAGAACAGTTCCTACCTCGTT |
9: 20,821,424 (GRCm39) |
|
probably null |
Het |
| Dnmt1 |
CTACCTCGTT |
CTACCTCGTTTTGGGGGCGGAGCACAGTTCGTACCTCGTT |
9: 20,821,432 (GRCm39) |
|
probably benign |
Het |
| Dnmt1 |
CCTACCTCGTT |
CCTACCTCGTTTTGGAGGCGGAGCACAGTTGCTACCTCGTT |
9: 20,821,431 (GRCm39) |
|
probably null |
Het |
| Fam171b |
AGCAGC |
AGCAGCCGCAGC |
2: 83,643,220 (GRCm39) |
|
probably benign |
Het |
| Gab3 |
TCT |
TCTGCT |
X: 74,043,593 (GRCm39) |
|
probably benign |
Het |
| Gab3 |
TTC |
TTCGTC |
X: 74,043,616 (GRCm39) |
|
probably benign |
Het |
| Gabre |
CAGGCTCA |
C |
X: 71,313,783 (GRCm39) |
|
probably null |
Het |
| Garin5a |
GAGGA |
GAGGAAGGCTGGATCCTGGATACCTGGGGCTGAGGTAGGA |
7: 44,149,957 (GRCm39) |
|
probably null |
Het |
| Gm16519 |
AAGCAG |
AAGCAGCAG |
17: 71,236,326 (GRCm39) |
|
probably benign |
Het |
| Gm8369 |
GTGT |
GTGTTTGT |
19: 11,489,112 (GRCm39) |
|
probably null |
Het |
| Gucy2d |
CTGGG |
CTGGGGGTCGTGGG |
7: 98,108,248 (GRCm39) |
|
probably benign |
Het |
| Irag2 |
CACATTG |
CACATTGAGTACATTG |
6: 145,119,511 (GRCm39) |
|
probably benign |
Het |
| Ivl |
CTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG |
CCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG |
3: 92,479,607 (GRCm39) |
|
probably benign |
Het |
| Kmt2c |
TG |
TGCTCTCG,TGCGG |
5: 25,520,770 (GRCm39) |
|
probably benign |
Het |
| Krtap28-10 |
GCCACA |
GCCACATCCACA |
1: 83,019,851 (GRCm39) |
|
probably benign |
Het |
| Krtap28-10 |
CACAGCCACAGCC |
CACAGCCACAGCCGCAACAGCCACAGCC |
1: 83,019,991 (GRCm39) |
|
probably benign |
Het |
| Krtap28-10 |
ACAGCCACCACAGCCACAGCCACCACAGC |
ACAGCCACCACAGCCCCAGCCACCACAGCCACAGCCACCACAGC |
1: 83,019,983 (GRCm39) |
|
probably benign |
Het |
| Mamld1 |
CAG |
CAGGAG |
X: 70,162,443 (GRCm39) |
|
probably benign |
Het |
| Med12l |
GCA |
GCATCA |
3: 59,183,404 (GRCm39) |
|
probably benign |
Het |
| Nefh |
CTCAGCTGGGGACTTGGCCTCACCTGGGGACTTGGCCTCACCTGGGGACTTGGCCTC |
CTCAGCTGGGGACTTGGCCTCAGCTGGGGACTTGGCCTCACCTGGGGACTTGGCCTCACCTGGGGACTTGGCCTC |
11: 4,891,004 (GRCm39) |
|
probably benign |
Het |
| Nelfe |
AAGACAGAGACCGGGATCGAGACAGAGAC |
AAGACAGAGACCGGGATCGAGACAGAGACAGAGACCGGGATCGAGACAGAGAC |
17: 35,073,038 (GRCm39) |
|
probably benign |
Het |
| Osmr |
CTTCT |
CTTCTTCT |
15: 6,867,181 (GRCm39) |
|
probably benign |
Het |
| Pou3f1 |
GGCGGCAGCGGC |
GGCGGCAGCGGCAGCGGC |
4: 124,551,589 (GRCm39) |
|
probably benign |
Het |
| Setd1a |
GGTGGTGGT |
GGTGGTGGTTGTGGTGGT |
7: 127,384,471 (GRCm39) |
|
probably benign |
Het |
| Sgo2b |
G |
A |
8: 64,396,203 (GRCm39) |
R18C |
probably damaging |
Het |
| Spata31h1 |
AATG |
AATGTCAATG |
10: 82,126,827 (GRCm39) |
|
probably benign |
Het |
| Spmap2l |
CGA |
CGAACCTCCCCAGTCCCGCAAGGCCAGTGA |
5: 77,164,250 (GRCm39) |
|
probably benign |
Het |
| Stard8 |
GGA |
GGAAGA |
X: 98,110,126 (GRCm39) |
|
probably benign |
Het |
| Zscan18 |
GCTGGCTAGGCTCTTCCTGTTGGTTGGGTTGATCCTTCTGGCTAGGCTCTTCCTGTTGTTTGCATTGATCCTTCTGGCTAGGCTCTTCCTGTTGGTTGCATTGATCCTTCTGGCTAGGCTCTTCCTGTTGG |
GCTGGCTAGGCTCTTCCTGTTGTTTGCATTGATCCTTCTGGCTAGGCTCTTCCTGTTGGTTGCATTGATCCTTCTGGCTAGGCTCTTCCTGTTGG |
7: 12,508,352 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Dmkn |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00908:Dmkn
|
APN |
7 |
30,477,695 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL03084:Dmkn
|
APN |
7 |
30,470,481 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
IGL03376:Dmkn
|
APN |
7 |
30,470,667 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R0077:Dmkn
|
UTSW |
7 |
30,464,719 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0718:Dmkn
|
UTSW |
7 |
30,464,211 (GRCm39) |
unclassified |
probably benign |
|
|
R0892:Dmkn
|
UTSW |
7 |
30,466,829 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1163:Dmkn
|
UTSW |
7 |
30,464,476 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1858:Dmkn
|
UTSW |
7 |
30,463,990 (GRCm39) |
missense |
probably benign |
0.08 |
|
R2915:Dmkn
|
UTSW |
7 |
30,464,741 (GRCm39) |
missense |
unknown |
|
|
R4705:Dmkn
|
UTSW |
7 |
30,463,406 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4806:Dmkn
|
UTSW |
7 |
30,470,667 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R4921:Dmkn
|
UTSW |
7 |
30,470,658 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5031:Dmkn
|
UTSW |
7 |
30,463,661 (GRCm39) |
missense |
probably benign |
0.09 |
|
R5056:Dmkn
|
UTSW |
7 |
30,463,529 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5577:Dmkn
|
UTSW |
7 |
30,463,971 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5780:Dmkn
|
UTSW |
7 |
30,477,040 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6233:Dmkn
|
UTSW |
7 |
30,479,104 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6504:Dmkn
|
UTSW |
7 |
30,475,854 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R7383:Dmkn
|
UTSW |
7 |
30,464,793 (GRCm39) |
missense |
unknown |
|
|
R7526:Dmkn
|
UTSW |
7 |
30,477,076 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R7667:Dmkn
|
UTSW |
7 |
30,477,034 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8790:Dmkn
|
UTSW |
7 |
30,463,449 (GRCm39) |
missense |
probably benign |
0.33 |
|
R9792:Dmkn
|
UTSW |
7 |
30,464,845 (GRCm39) |
missense |
unknown |
|
|
RF007:Dmkn
|
UTSW |
7 |
30,469,129 (GRCm39) |
splice site |
probably null |
|
|
RF022:Dmkn
|
UTSW |
7 |
30,466,600 (GRCm39) |
small insertion |
probably benign |
|
|
RF027:Dmkn
|
UTSW |
7 |
30,466,619 (GRCm39) |
small insertion |
probably benign |
|
|
RF030:Dmkn
|
UTSW |
7 |
30,466,607 (GRCm39) |
small insertion |
probably benign |
|
|
RF032:Dmkn
|
UTSW |
7 |
30,466,607 (GRCm39) |
small insertion |
probably benign |
|
|
RF038:Dmkn
|
UTSW |
7 |
30,466,619 (GRCm39) |
small insertion |
probably benign |
|
|
RF041:Dmkn
|
UTSW |
7 |
30,466,598 (GRCm39) |
small insertion |
probably benign |
|
|
RF054:Dmkn
|
UTSW |
7 |
30,466,613 (GRCm39) |
small insertion |
probably benign |
|
|
RF056:Dmkn
|
UTSW |
7 |
30,466,632 (GRCm39) |
small insertion |
probably benign |
|
|
RF057:Dmkn
|
UTSW |
7 |
30,466,613 (GRCm39) |
small insertion |
probably benign |
|
|
RF062:Dmkn
|
UTSW |
7 |
30,466,600 (GRCm39) |
small insertion |
probably benign |
|
|
X0067:Dmkn
|
UTSW |
7 |
30,477,652 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
Z1176:Dmkn
|
UTSW |
7 |
30,475,922 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
Z1186:Dmkn
|
UTSW |
7 |
30,466,596 (GRCm39) |
small insertion |
probably benign |
|
|
Z1186:Dmkn
|
UTSW |
7 |
30,464,826 (GRCm39) |
small deletion |
probably benign |
|
|
Z1186:Dmkn
|
UTSW |
7 |
30,464,818 (GRCm39) |
small deletion |
probably benign |
|
|
Z1186:Dmkn
|
UTSW |
7 |
30,466,602 (GRCm39) |
small insertion |
probably benign |
|
|
Z1186:Dmkn
|
UTSW |
7 |
30,466,599 (GRCm39) |
small insertion |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- GTGTATTTTCAAAGCCTGGGC -3'
(R):5'- CATTCCCTGGGTTGTTACACTG -3'
Sequencing Primer
(F):5'- AACCAGTTGGCCAAAGTC -3'
(R):5'- CTGGGTTGTTACACTGTAGGAGAAAG -3'
|
| Posted On |
2019-12-04 |
Incidental Mutation