Incidental Mutation 'RF062:Cckbr'
ID |
605439 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Cckbr
|
Ensembl Gene |
ENSMUSG00000030898 |
Gene Name |
cholecystokinin B receptor |
Synonyms |
CCK2R, CCK-B/gastrin receptor, CCK2/gastrin, CCKR-2 |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.073)
|
Stock # |
RF062 (G1)
|
Quality Score |
128.457 |
Status
|
Not validated
|
Chromosome |
7 |
Chromosomal Location |
105075201-105085546 bp(+) (GRCm39) |
Type of Mutation |
frame shift |
DNA Base Change (assembly) |
CAG to C
at 105083894 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000033189
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000033189]
[ENSMUST00000181339]
|
AlphaFold |
P56481 |
Predicted Effect |
probably null
Transcript: ENSMUST00000033189
|
SMART Domains |
Protein: ENSMUSP00000033189 Gene: ENSMUSG00000030898
Domain | Start | End | E-Value | Type |
low complexity region
|
9 |
21 |
N/A |
INTRINSIC |
low complexity region
|
27 |
38 |
N/A |
INTRINSIC |
Pfam:7tm_1
|
71 |
396 |
4.1e-59 |
PFAM |
low complexity region
|
409 |
434 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000181339
|
SMART Domains |
Protein: ENSMUSP00000138052 Gene: ENSMUSG00000030898
Domain | Start | End | E-Value | Type |
low complexity region
|
9 |
21 |
N/A |
INTRINSIC |
low complexity region
|
27 |
38 |
N/A |
INTRINSIC |
Pfam:7tm_1
|
71 |
301 |
3.3e-49 |
PFAM |
|
Coding Region Coverage |
- 1x: 99.8%
- 3x: 99.6%
- 10x: 99.3%
- 20x: 98.6%
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: This gene encodes a multipass transmembrane receptor protein expressed in the central nervous system and gastrointestinal tract. Cholecystokinin and gastrin bind to the encoded protein to stimulate gastric acid secretion and mucosal growth in the gastrointestinal tract, and anxiety, pain sensation and memory in the brain. Mice lacking the encoded protein exhibit an increase in the basal gastric pH and gastrin levels in the bloodstream as well as mild hypocalcemia, secondary hyperparathyroidism and increased bone resorption. [provided by RefSeq, Apr 2015] PHENOTYPE: Nullizygous mice show gastic mucoca defects, high gastic pH and hypergastrenemia. Homozygotes for a null allele also exhibit higher energy intake and expenditure, less susceptibility to endotoxin shock, altered pain and mechanical sensitivity, and behavioral changes to isolation and addictive drugs. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 19 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Anapc2 |
GTGGCGGCGGCGGC |
G |
2: 25,162,549 (GRCm39) |
|
probably null |
Het |
Ankhd1 |
GGCGGC |
GGCGGCAGCGGC |
18: 36,693,971 (GRCm39) |
|
probably benign |
Het |
Defb22 |
TGGCCT |
TGGCCTCTGCGGCAGAGCCGGCCT |
2: 152,327,745 (GRCm39) |
|
probably benign |
Het |
Dennd2b |
GGGCAGCCCTCACTGA |
G |
7: 109,156,153 (GRCm39) |
|
probably benign |
Het |
Dmkn |
GGTGGAAGTGGTGGAAGTGGTGGAAGT |
GGTGGAAGTGGTGGAAGTGGTGGAAGTCGTGGAAGTGGTGGAAGTGGTGGAAGT |
7: 30,466,600 (GRCm39) |
|
probably benign |
Het |
Efhd2 |
GCCGCC |
GCCGCCTCCGCC |
4: 141,602,066 (GRCm39) |
|
probably benign |
Het |
Efhd2 |
CC |
CCGCCGAC |
4: 141,602,085 (GRCm39) |
|
probably benign |
Het |
Fsip2 |
TTTT |
TTTTGTTT |
2: 82,814,707 (GRCm39) |
|
probably benign |
Het |
Gm11060 |
CTGTGTG |
CTG |
2: 104,922,385 (GRCm39) |
|
probably null |
Het |
Gm5591 |
GC |
G |
7: 38,221,759 (GRCm39) |
|
probably null |
Het |
Krt10 |
CGCC |
CGCCGCC |
11: 99,277,025 (GRCm39) |
|
probably benign |
Het |
Krt10 |
ACCACCGCC |
ACCACCGCCACCGCC |
11: 99,280,090 (GRCm39) |
|
probably benign |
Het |
Nefh |
TGGGGACTTGGCCTCACCTGGGGACTTGGCCTC |
TGGGGACTTGGCCTCACCGGGGGACTTGGCCTCACCTGGGGACTTGGCCTC |
11: 4,891,028 (GRCm39) |
|
probably benign |
Het |
Nusap1 |
CAAGCTGAGA |
CAAGCTGAGATACACGTTAGCAGTGAGGAGGAAGCTGAGA |
2: 119,458,082 (GRCm39) |
|
probably benign |
Het |
Nusap1 |
A |
ATACACGTTAGCAGTGAGGAGCAAGCTGAGG |
2: 119,458,091 (GRCm39) |
|
probably benign |
Het |
Rfx4 |
CTCTCTCTCTCTCT |
CTCTCTCTCTCTCTCTATCTCTCTCTCTCT |
10: 84,694,345 (GRCm39) |
|
probably benign |
Het |
Tfeb |
GCA |
GCATCA |
17: 48,097,025 (GRCm39) |
|
probably benign |
Het |
Tnfaip8 |
ACACACACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC |
AC |
18: 50,179,898 (GRCm39) |
|
probably benign |
Het |
Zfp384 |
CCCAGGCCCAGGCCCAGGCCCAGG |
CCCAGGCCCAGGACCAGGCCCAGGCCCAGGCCCAGG |
6: 125,013,429 (GRCm39) |
|
probably benign |
Het |
|
Other mutations in Cckbr |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00503:Cckbr
|
APN |
7 |
105,083,449 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01630:Cckbr
|
APN |
7 |
105,083,293 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01931:Cckbr
|
APN |
7 |
105,075,310 (GRCm39) |
missense |
probably benign |
|
IGL01955:Cckbr
|
APN |
7 |
105,084,169 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL02219:Cckbr
|
APN |
7 |
105,083,255 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02820:Cckbr
|
APN |
7 |
105,083,238 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02858:Cckbr
|
APN |
7 |
105,083,238 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02878:Cckbr
|
APN |
7 |
105,083,238 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02946:Cckbr
|
APN |
7 |
105,083,238 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03179:Cckbr
|
APN |
7 |
105,084,130 (GRCm39) |
missense |
probably benign |
0.02 |
FR4548:Cckbr
|
UTSW |
7 |
105,083,888 (GRCm39) |
small deletion |
probably benign |
|
R0380:Cckbr
|
UTSW |
7 |
105,084,198 (GRCm39) |
missense |
probably benign |
0.00 |
R1767:Cckbr
|
UTSW |
7 |
105,083,758 (GRCm39) |
missense |
possibly damaging |
0.56 |
R3890:Cckbr
|
UTSW |
7 |
105,075,376 (GRCm39) |
missense |
probably benign |
0.00 |
R3892:Cckbr
|
UTSW |
7 |
105,075,376 (GRCm39) |
missense |
probably benign |
0.00 |
R5116:Cckbr
|
UTSW |
7 |
105,082,862 (GRCm39) |
missense |
probably damaging |
1.00 |
R5589:Cckbr
|
UTSW |
7 |
105,083,732 (GRCm39) |
missense |
probably damaging |
0.98 |
R5975:Cckbr
|
UTSW |
7 |
105,119,826 (GRCm39) |
missense |
probably benign |
0.07 |
R6797:Cckbr
|
UTSW |
7 |
105,083,773 (GRCm39) |
missense |
possibly damaging |
0.85 |
R6940:Cckbr
|
UTSW |
7 |
105,084,103 (GRCm39) |
missense |
probably benign |
0.00 |
R7194:Cckbr
|
UTSW |
7 |
105,084,552 (GRCm39) |
missense |
possibly damaging |
0.72 |
R7293:Cckbr
|
UTSW |
7 |
105,083,852 (GRCm39) |
missense |
probably benign |
0.05 |
R7581:Cckbr
|
UTSW |
7 |
105,082,993 (GRCm39) |
missense |
probably benign |
0.05 |
R7793:Cckbr
|
UTSW |
7 |
105,082,798 (GRCm39) |
missense |
probably benign |
0.00 |
R7891:Cckbr
|
UTSW |
7 |
105,084,557 (GRCm39) |
missense |
probably benign |
0.00 |
R8435:Cckbr
|
UTSW |
7 |
105,075,280 (GRCm39) |
missense |
probably benign |
|
RF009:Cckbr
|
UTSW |
7 |
105,083,893 (GRCm39) |
frame shift |
probably null |
|
RF039:Cckbr
|
UTSW |
7 |
105,083,893 (GRCm39) |
frame shift |
probably null |
|
|
Predicted Primers |
PCR Primer
(F):5'- GGTCCGTGCTTCTGCTAATAC -3'
(R):5'- AGCAGCCATCACTGTCTTCC -3'
Sequencing Primer
(F):5'- GTGCTTCTGCTAATACTGCTG -3'
(R):5'- AGTCAGGCTGGTCACATGC -3'
|
Posted On |
2019-12-04 |