Mutagenetix > Incidental Mutation

Incidental Mutation 'RF063:Iqgap1'

605463

Institutional Source

Beutler Lab

Gene Symbol

Iqgap1

Ensembl Gene

ENSMUSG00000030536

Gene Name

IQ motif containing GTPase activating protein 1

Synonyms

D7Ertd237e, D7Ertd257e

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

RF063 (G1)

Quality Score

217.468

Status

Not validated

Chromosome

Chromosomal Location

80711583-80825974 bp(-) (GRCm38)

Type of Mutation

frame shift

DNA Base Change (assembly)

AGGCCACCACTGCTCACAGGTGCTGTACCT to A at 80723751 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000128278 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000167377]

AlphaFold

Q9JKF1

Predicted Effect

probably null
Transcript: ENSMUST00000167377

SMART Domains

Protein: ENSMUSP00000128278
Gene: ENSMUSG00000030536

Domain	Start	End	E-Value	Type
CH	46	155	2.02e-20	SMART
internal_repeat_1	203	278	3.71e-8	PROSPERO
low complexity region	324	335	N/A	INTRINSIC
low complexity region	390	399	N/A	INTRINSIC
coiled coil region	488	515	N/A	INTRINSIC
internal_repeat_1	608	684	3.71e-8	PROSPERO
IQ	744	766	3.85e-3	SMART
IQ	774	796	1.12e-4	SMART
IQ	804	826	1.32e-1	SMART
IQ	834	856	1.15e1	SMART
coiled coil region	886	914	N/A	INTRINSIC
RasGAP	992	1345	7.46e-89	SMART
Pfam:RasGAP_C	1452	1580	4.5e-41	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000205606

Coding Region Coverage

1x: 99.8%
3x: 99.7%
10x: 99.3%
20x: 98.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the IQGAP family. The protein contains four IQ domains, one calponin homology domain, one Ras-GAP domain and one WW domain. It interacts with components of the cytoskeleton, with cell adhesion molecules, and with several signaling molecules to regulate cell morphology and motility. Expression of the protein is upregulated by gene amplification in two gastric cancer cell lines. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygotes for a targeted null allele exhibit a late-onset gastric hyperplasia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 26 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5430401F13Rik	CAGAAAGGAAAAGGTGGCCAG	CAGAAAGGAAAAGGTGGCCAGCAAAAACAGAAAGGAAAAGGTGGCCAG	6: 131,552,883 (GRCm38)		probably benign	Het
5430401F13Rik	AGAAAGGAAAAGGTGGCCAG	AGAAAGGAAAAGGTGGCCAGCAAAAACAGAAAGGAAAAGGTGGCCAG	6: 131,552,884 (GRCm38)		probably benign	Het
Abca2	G	T	2: 25,447,397 (GRCm38)	E2421D	probably damaging	Het
Apc	A	AATAAAGCCC	18: 34,282,009 (GRCm38)		probably benign	Het
Calhm1	TGGCTGTGGCTG	TGGCTGTGGCTGCGGCTGTGGCTG	19: 47,141,256 (GRCm38)		probably benign	Het
Casz1	CACA	C	4: 148,952,304 (GRCm38)		probably benign	Het
Dock4	GTGCCGGTGCCCGT	G	12: 40,844,399 (GRCm38)		probably null	Het
F11r	CCCCCCCCC	CCCCCCCCCCC	1: 171,461,190 (GRCm38)		probably benign	Het
Fam171b	C	CAGCAGA	2: 83,812,896 (GRCm38)		probably benign	Het
Fbrsl1	GCGTGTGCTGGT	GCGTGTGCTGGTACGTGTGCTGGT	5: 110,378,139 (GRCm38)		probably benign	Het
Fbrsl1	GTGCTGGTG	GTGCTGGTGCGTCTGCTGGTG	5: 110,378,143 (GRCm38)		probably benign	Het
Iqcf4	TCCTTTT	TCCTTTTCCTTTTCCTTGTCCTTTTCCTTTTCCTTTGCCTTTT	9: 106,570,617 (GRCm38)		probably benign	Het
Kmt2c	GCT	GCTCCT	5: 25,315,764 (GRCm38)		probably benign	Het
Lrtm1	TAGCCTCAGTGGCC	T	14: 29,021,443 (GRCm38)		probably null	Het
Med12l	AACA	AACAACA	3: 59,275,958 (GRCm38)		probably benign	Het
Med12l	AGC	AGCCGC	3: 59,275,973 (GRCm38)		probably benign	Het
Rassf6	C	CTGCCTCACTCATGGTCCTGTAGAGCAATGGGGATTA	5: 90,608,942 (GRCm38)		probably null	Het
Sh3pxd2b	TGTGCC	TGTGCCCGTGCC	11: 32,423,051 (GRCm38)		probably benign	Het
Sorcs2	ATACATACATACCT	AT	5: 36,153,811 (GRCm38)		probably null	Het
Sry	TGCTGCTGCTGCTGCTG	T	Y: 2,662,595 (GRCm38)		probably null	Het
Stard8	GAG	GAGTAG	X: 99,066,524 (GRCm38)		probably null	Het
Tcof1	GATCCCCTTGGC	GATCCCCTTGGCTGCTGAGATGGGCACTTTCCCAGATATCCCCTTGGC	18: 60,833,573 (GRCm38)		probably benign	Het
Thegl	CCAG	CCAGCGATCCTCCCCAGTCCCGCAAGGTCAG	5: 77,016,426 (GRCm38)		probably benign	Het
Trappc9	GCTGCTGCTGCT	GCTGCTGCTGCTGCTTCTGCTGCTGCT	15: 72,801,320 (GRCm38)		probably benign	Het
Trappc9	CTGCTGCT	CTGCTGCTGCTGCTGTTGCTGCT	15: 72,801,324 (GRCm38)		probably benign	Het
Vmn1r74	CAGAGCCACCAAGTACCT	C	7: 11,847,140 (GRCm38)		probably null	Het

Other mutations in Iqgap1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00481:Iqgap1	APN	7	80,759,844 (GRCm38)	missense	probably benign	0.00
IGL00984:Iqgap1	APN	7	80,726,798 (GRCm38)	missense	probably damaging	1.00
IGL01570:Iqgap1	APN	7	80,723,061 (GRCm38)	missense	possibly damaging	0.76
IGL01738:Iqgap1	APN	7	80,723,900 (GRCm38)	missense	possibly damaging	0.80
IGL02141:Iqgap1	APN	7	80,738,121 (GRCm38)	missense	probably damaging	1.00
IGL02336:Iqgap1	APN	7	80,752,293 (GRCm38)	missense	probably benign	0.39
IGL02416:Iqgap1	APN	7	80,726,038 (GRCm38)	missense	probably damaging	1.00
IGL02597:Iqgap1	APN	7	80,723,885 (GRCm38)	missense	probably damaging	1.00
IGL02662:Iqgap1	APN	7	80,743,079 (GRCm38)	missense	probably benign
IGL03157:Iqgap1	APN	7	80,751,888 (GRCm38)	missense	probably benign	0.34
IGL03189:Iqgap1	APN	7	80,713,842 (GRCm38)	missense	probably benign	0.12
IGL03216:Iqgap1	APN	7	80,743,088 (GRCm38)	missense	probably benign	0.33
R0024:Iqgap1	UTSW	7	80,751,939 (GRCm38)	missense	probably benign
R0126:Iqgap1	UTSW	7	80,738,322 (GRCm38)	missense	probably benign	0.00
R0144:Iqgap1	UTSW	7	80,751,920 (GRCm38)	missense	probably damaging	1.00
R0325:Iqgap1	UTSW	7	80,751,930 (GRCm38)	missense	probably benign	0.01
R0376:Iqgap1	UTSW	7	80,723,879 (GRCm38)	missense	probably benign	0.01
R0650:Iqgap1	UTSW	7	80,736,395 (GRCm38)	missense	probably damaging	1.00
R0652:Iqgap1	UTSW	7	80,736,395 (GRCm38)	missense	probably damaging	1.00
R0741:Iqgap1	UTSW	7	80,720,987 (GRCm38)	missense	probably benign	0.03
R0751:Iqgap1	UTSW	7	80,725,573 (GRCm38)	unclassified	probably benign
R1067:Iqgap1	UTSW	7	80,723,828 (GRCm38)	missense	probably benign	0.01
R1389:Iqgap1	UTSW	7	80,759,756 (GRCm38)	critical splice donor site	probably null
R1473:Iqgap1	UTSW	7	80,734,011 (GRCm38)	missense	probably benign	0.00
R1613:Iqgap1	UTSW	7	80,768,457 (GRCm38)	missense	probably damaging	1.00
R1842:Iqgap1	UTSW	7	80,760,883 (GRCm38)	missense	probably damaging	1.00
R1909:Iqgap1	UTSW	7	80,743,828 (GRCm38)	missense	probably benign
R2062:Iqgap1	UTSW	7	80,723,979 (GRCm38)	nonsense	probably null
R2149:Iqgap1	UTSW	7	80,762,560 (GRCm38)	missense	probably damaging	1.00
R2153:Iqgap1	UTSW	7	80,759,903 (GRCm38)	missense	possibly damaging	0.55
R2153:Iqgap1	UTSW	7	80,751,953 (GRCm38)	missense	probably benign	0.00
R3160:Iqgap1	UTSW	7	80,752,338 (GRCm38)	missense	probably benign
R3162:Iqgap1	UTSW	7	80,752,338 (GRCm38)	missense	probably benign
R3605:Iqgap1	UTSW	7	80,723,789 (GRCm38)	missense	probably benign	0.02
R3709:Iqgap1	UTSW	7	80,717,087 (GRCm38)	missense	possibly damaging	0.87
R3935:Iqgap1	UTSW	7	80,743,837 (GRCm38)	missense	possibly damaging	0.54
R3979:Iqgap1	UTSW	7	80,759,934 (GRCm38)	missense	probably damaging	0.98
R4545:Iqgap1	UTSW	7	80,762,567 (GRCm38)	critical splice acceptor site	probably null
R4787:Iqgap1	UTSW	7	80,735,513 (GRCm38)	missense	probably damaging	1.00
R4925:Iqgap1	UTSW	7	80,765,317 (GRCm38)	missense	probably damaging	1.00
R4953:Iqgap1	UTSW	7	80,723,776 (GRCm38)	splice site	probably null
R5037:Iqgap1	UTSW	7	80,734,100 (GRCm38)	missense	probably damaging	1.00
R5158:Iqgap1	UTSW	7	80,743,068 (GRCm38)	missense	probably benign	0.02
R5183:Iqgap1	UTSW	7	80,723,065 (GRCm38)	missense	probably damaging	1.00
R5262:Iqgap1	UTSW	7	80,726,742 (GRCm38)	missense	probably benign	0.00
R5271:Iqgap1	UTSW	7	80,734,148 (GRCm38)	missense	probably damaging	1.00
R5289:Iqgap1	UTSW	7	80,738,724 (GRCm38)	missense	possibly damaging	0.88
R5359:Iqgap1	UTSW	7	80,766,959 (GRCm38)	missense	probably benign	0.00
R5423:Iqgap1	UTSW	7	80,799,862 (GRCm38)	missense	probably damaging	1.00
R5843:Iqgap1	UTSW	7	80,726,080 (GRCm38)	missense	probably benign	0.03
R5849:Iqgap1	UTSW	7	80,803,158 (GRCm38)	missense	probably benign
R6164:Iqgap1	UTSW	7	80,809,106 (GRCm38)	missense	unknown
R6315:Iqgap1	UTSW	7	80,799,890 (GRCm38)	missense	possibly damaging	0.65
R6335:Iqgap1	UTSW	7	80,728,024 (GRCm38)	missense	probably damaging	1.00
R6488:Iqgap1	UTSW	7	80,730,326 (GRCm38)	missense	probably benign	0.00
R6723:Iqgap1	UTSW	7	80,723,822 (GRCm38)	missense	probably benign	0.01
R6800:Iqgap1	UTSW	7	80,728,981 (GRCm38)	missense	possibly damaging	0.56
R6815:Iqgap1	UTSW	7	80,766,884 (GRCm38)	critical splice donor site	probably null
R7240:Iqgap1	UTSW	7	80,759,839 (GRCm38)	missense	probably benign	0.22
R7386:Iqgap1	UTSW	7	80,726,042 (GRCm38)	missense	probably damaging	1.00
R7387:Iqgap1	UTSW	7	80,720,990 (GRCm38)	missense	probably benign	0.03
R7410:Iqgap1	UTSW	7	80,723,030 (GRCm38)	nonsense	probably null
R7429:Iqgap1	UTSW	7	80,751,440 (GRCm38)	missense	probably benign	0.00
R7452:Iqgap1	UTSW	7	80,760,829 (GRCm38)	missense	possibly damaging	0.80
R7615:Iqgap1	UTSW	7	80,751,346 (GRCm38)	missense	probably benign
R7615:Iqgap1	UTSW	7	80,730,100 (GRCm38)	missense	probably damaging	1.00
R7726:Iqgap1	UTSW	7	80,757,456 (GRCm38)	missense	probably benign	0.37
R7783:Iqgap1	UTSW	7	80,809,059 (GRCm38)	missense	probably benign	0.01
R7785:Iqgap1	UTSW	7	80,738,169 (GRCm38)	missense	probably damaging	1.00
R7862:Iqgap1	UTSW	7	80,743,888 (GRCm38)	missense	probably benign	0.04
R8270:Iqgap1	UTSW	7	80,730,127 (GRCm38)	missense	probably damaging	1.00
R8556:Iqgap1	UTSW	7	80,726,039 (GRCm38)	missense	probably damaging	1.00
R8932:Iqgap1	UTSW	7	80,751,393 (GRCm38)	missense	probably benign
R9520:Iqgap1	UTSW	7	80,744,121 (GRCm38)	missense	probably benign
R9533:Iqgap1	UTSW	7	80,734,181 (GRCm38)	missense	possibly damaging	0.88
R9536:Iqgap1	UTSW	7	80,809,092 (GRCm38)	missense
R9730:Iqgap1	UTSW	7	80,751,376 (GRCm38)	missense	possibly damaging	0.63
RF004:Iqgap1	UTSW	7	80,720,875 (GRCm38)	missense	probably benign
X0064:Iqgap1	UTSW	7	80,720,931 (GRCm38)	nonsense	probably null
X0067:Iqgap1	UTSW	7	80,766,903 (GRCm38)	missense	probably benign
Z1176:Iqgap1	UTSW	7	80,768,309 (GRCm38)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AAAAGGGTCTGGAGGATTCTTTAAG -3'
(R):5'- AACATCAGAGGGCCATGCAG -3'

Sequencing Primer
(F):5'- GAGCAATTAAAAATTCAGACACCAG -3'
(R):5'- ATGCAGAGACGGGCTATCC -3'

Posted On

2019-12-04