Incidental Mutation 'R7833:Lcor'
ID 605819
Institutional Source Beutler Lab
Gene Symbol Lcor
Ensembl Gene ENSMUSG00000025019
Gene Name ligand dependent nuclear receptor corepressor
Synonyms LOC381224, A630025C20Rik, Gm340, 3110023F06Rik, Mlr2
MMRRC Submission 045887-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.560) question?
Stock # R7833 (G1)
Quality Score 225.009
Status Not validated
Chromosome 19
Chromosomal Location 41471076-41574975 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 41573024 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 593 (D593G)
Ref Sequence ENSEMBL: ENSMUSP00000128083 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000172371]
AlphaFold Q6ZPI3
Predicted Effect probably benign
Transcript: ENSMUST00000172371
AA Change: D593G

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)
SMART Domains Protein: ENSMUSP00000128083
Gene: ENSMUSG00000090673
AA Change: D593G

DomainStartEndE-ValueType
low complexity region 10 17 N/A INTRINSIC
low complexity region 438 450 N/A INTRINSIC
low complexity region 710 724 N/A INTRINSIC
low complexity region 768 779 N/A INTRINSIC
Pfam:DUF4553 787 1241 9.7e-179 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency 100% (71/71)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] LCOR is a transcriptional corepressor widely expressed in fetal and adult tissues that is recruited to agonist-bound nuclear receptors through a single LxxLL motif, also referred to as a nuclear receptor (NR) box (Fernandes et al., 2003 [PubMed 12535528]).[supplied by OMIM, Mar 2008]
Allele List at MGI
Other mutations in this stock
Total: 74 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acin1 A T 14: 54,902,059 (GRCm39) S578T possibly damaging Het
Acot5 A G 12: 84,122,601 (GRCm39) Q395R probably damaging Het
Adamts15 T A 9: 30,833,401 (GRCm39) T45S probably benign Het
Agbl2 A G 2: 90,645,777 (GRCm39) K837E probably benign Het
Atf2 T C 2: 73,684,229 (GRCm39) T19A possibly damaging Het
Atp6v0a2 T C 5: 124,782,969 (GRCm39) V238A probably damaging Het
Atp9a A T 2: 168,516,777 (GRCm39) V430E probably benign Het
Cachd1 G A 4: 100,832,012 (GRCm39) V725I probably benign Het
Ccnb1 G A 13: 100,917,859 (GRCm39) T247M probably damaging Het
Cd40 A T 2: 164,908,431 (GRCm39) D169V probably benign Het
Cdc25c G A 18: 34,880,296 (GRCm39) T146I probably benign Het
Cdhr18 A T 14: 13,896,968 (GRCm38) probably null Het
Ceacam3 C A 7: 16,893,778 (GRCm39) Q430K Het
Cerkl G A 2: 79,171,724 (GRCm39) T378I probably benign Het
Cpn2 G T 16: 30,079,163 (GRCm39) N179K probably damaging Het
Duox1 A G 2: 122,154,869 (GRCm39) D418G probably damaging Het
Eif1ad13 G A 12: 87,762,322 (GRCm39) R14K unknown Het
Eps8l1 C A 7: 4,471,866 (GRCm39) P11T possibly damaging Het
Erc1 C T 6: 119,801,447 (GRCm39) W190* probably null Het
Exosc7 A T 9: 122,959,984 (GRCm39) E195V probably benign Het
F2rl2 A G 13: 95,837,426 (GRCm39) N157S probably damaging Het
Fgd2 T C 17: 29,586,369 (GRCm39) L270P possibly damaging Het
Fitm2 A T 2: 163,312,019 (GRCm39) W65R probably damaging Het
Gabbr1 T G 17: 37,367,861 (GRCm39) I437S possibly damaging Het
Galntl6 A T 8: 58,310,571 (GRCm39) S377T probably benign Het
Gml2 T A 15: 74,693,217 (GRCm39) C73* probably null Het
Htr6 G T 4: 138,789,142 (GRCm39) F304L probably damaging Het
Hydin G A 8: 111,316,092 (GRCm39) G4328D probably damaging Het
Kcnj14 T C 7: 45,467,317 (GRCm39) D343G probably damaging Het
Klhdc1 T A 12: 69,329,942 (GRCm39) I357N probably benign Het
Man2a1 A G 17: 64,973,746 (GRCm39) T341A probably damaging Het
Mrm1 A C 11: 84,709,469 (GRCm39) V196G probably damaging Het
Mybbp1a A G 11: 72,333,727 (GRCm39) probably null Het
Myo19 G A 11: 84,800,093 (GRCm39) C826Y probably benign Het
Nbea A G 3: 55,910,218 (GRCm39) W1326R probably damaging Het
Notch1 A G 2: 26,349,545 (GRCm39) *2532Q probably null Het
Npas2 A G 1: 39,365,228 (GRCm39) Y287C probably damaging Het
Or3a1b G A 11: 74,012,663 (GRCm39) D183N probably damaging Het
Or9g20 T A 2: 85,630,293 (GRCm39) D107V probably benign Het
Pate7 T A 9: 35,688,406 (GRCm39) S60C probably damaging Het
Pcdhga7 C A 18: 37,849,077 (GRCm39) D361E possibly damaging Het
Pde10a T A 17: 9,180,752 (GRCm39) Y447N possibly damaging Het
Piwil2 T A 14: 70,632,890 (GRCm39) I561F probably benign Het
Pml C A 9: 58,141,968 (GRCm39) R288L probably benign Het
Ppp4r4 A G 12: 103,564,407 (GRCm39) T591A probably benign Het
Prxl2c T C 13: 64,460,092 (GRCm39) S84G probably benign Het
Ptprb A G 10: 116,151,156 (GRCm39) T273A probably benign Het
Ptpro T A 6: 137,393,861 (GRCm39) L843* probably null Het
Qrfpr T C 3: 36,243,751 (GRCm39) I117V probably benign Het
Qrich2 T C 11: 116,346,591 (GRCm39) D1411G probably benign Het
Rad51ap2 T C 12: 11,506,656 (GRCm39) S193P probably benign Het
Raver1 T C 9: 20,992,610 (GRCm39) E273G probably benign Het
Rubcn C A 16: 32,688,644 (GRCm39) probably benign Het
S1pr4 C T 10: 81,334,326 (GRCm39) V383I possibly damaging Het
Scn7a T C 2: 66,506,494 (GRCm39) D1465G probably damaging Het
Smarca4 T A 9: 21,558,655 (GRCm39) D607E possibly damaging Het
Srbd1 T A 17: 86,292,882 (GRCm39) I896L possibly damaging Het
Sulf2 G T 2: 165,921,456 (GRCm39) N722K possibly damaging Het
Surf1 A G 2: 26,806,280 (GRCm39) Y22H probably benign Het
Syngr2 A G 11: 117,703,982 (GRCm39) T150A probably benign Het
Szt2 G T 4: 118,223,416 (GRCm39) H3056N unknown Het
Tmf1 A T 6: 97,138,372 (GRCm39) S849T probably benign Het
Tns1 T A 1: 74,130,490 (GRCm39) probably benign Het
Trio G T 15: 27,774,172 (GRCm39) P1764Q probably damaging Het
Trpc3 A T 3: 36,694,821 (GRCm39) V711D probably damaging Het
Ttll3 G T 6: 113,386,298 (GRCm39) K710N probably damaging Het
Unc13c A G 9: 73,388,391 (GRCm39) S2132P possibly damaging Het
Utp20 G A 10: 88,636,998 (GRCm39) P738S possibly damaging Het
Vmn2r76 C T 7: 85,877,892 (GRCm39) V502I probably benign Het
Vsig1 C T X: 139,833,875 (GRCm39) H232Y probably benign Het
Wdr64 T G 1: 175,591,511 (GRCm39) F390V probably damaging Het
Ybx3 T G 6: 131,344,826 (GRCm39) T341P possibly damaging Het
Zdhhc11 C A 13: 74,121,866 (GRCm39) Q126K possibly damaging Het
Zfp777 G A 6: 48,002,072 (GRCm39) P673S probably damaging Het
Other mutations in Lcor
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00737:Lcor APN 19 41,541,139 (GRCm39) missense probably damaging 0.97
IGL02079:Lcor APN 19 41,544,126 (GRCm39) missense probably benign 0.40
IGL02100:Lcor APN 19 41,547,193 (GRCm39) missense possibly damaging 0.93
IGL02444:Lcor APN 19 41,547,450 (GRCm39) missense probably damaging 0.99
IGL02578:Lcor APN 19 41,547,589 (GRCm39) missense probably damaging 1.00
IGL03072:Lcor APN 19 41,547,253 (GRCm39) missense possibly damaging 0.85
IGL03118:Lcor APN 19 41,546,808 (GRCm39) missense probably damaging 0.99
IGL03153:Lcor APN 19 41,546,795 (GRCm39) missense probably damaging 0.98
BB003:Lcor UTSW 19 41,571,008 (GRCm39) missense probably benign
BB013:Lcor UTSW 19 41,571,008 (GRCm39) missense probably benign
R0006:Lcor UTSW 19 41,573,338 (GRCm39) missense probably benign 0.00
R0686:Lcor UTSW 19 41,570,811 (GRCm39) missense possibly damaging 0.73
R1104:Lcor UTSW 19 41,574,502 (GRCm39) missense probably damaging 0.99
R1278:Lcor UTSW 19 41,573,122 (GRCm39) missense probably benign 0.07
R1606:Lcor UTSW 19 41,573,513 (GRCm39) missense probably benign 0.35
R1756:Lcor UTSW 19 41,547,705 (GRCm39) missense probably benign
R1833:Lcor UTSW 19 41,573,387 (GRCm39) missense probably benign 0.00
R1889:Lcor UTSW 19 41,547,567 (GRCm39) missense probably damaging 0.99
R1905:Lcor UTSW 19 41,572,013 (GRCm39) missense possibly damaging 0.73
R1913:Lcor UTSW 19 41,546,913 (GRCm39) missense probably benign 0.40
R1983:Lcor UTSW 19 41,546,806 (GRCm39) missense probably damaging 0.98
R2697:Lcor UTSW 19 41,572,466 (GRCm39) missense probably benign 0.43
R2881:Lcor UTSW 19 41,571,488 (GRCm39) missense probably damaging 1.00
R3885:Lcor UTSW 19 41,546,795 (GRCm39) missense probably damaging 0.98
R3886:Lcor UTSW 19 41,546,795 (GRCm39) missense probably damaging 0.98
R3888:Lcor UTSW 19 41,546,795 (GRCm39) missense probably damaging 0.98
R3889:Lcor UTSW 19 41,546,795 (GRCm39) missense probably damaging 0.98
R4720:Lcor UTSW 19 41,574,334 (GRCm39) missense probably benign 0.04
R4864:Lcor UTSW 19 41,573,803 (GRCm39) missense probably benign
R4908:Lcor UTSW 19 41,572,601 (GRCm39) missense probably benign 0.00
R5160:Lcor UTSW 19 41,544,053 (GRCm39) missense probably damaging 0.99
R5193:Lcor UTSW 19 41,570,969 (GRCm39) missense probably damaging 1.00
R5215:Lcor UTSW 19 41,574,371 (GRCm39) missense probably damaging 1.00
R5276:Lcor UTSW 19 41,573,478 (GRCm39) missense probably damaging 0.98
R5319:Lcor UTSW 19 41,574,791 (GRCm39) missense probably damaging 0.99
R5321:Lcor UTSW 19 41,573,643 (GRCm39) missense probably damaging 1.00
R5432:Lcor UTSW 19 41,573,042 (GRCm39) missense probably damaging 1.00
R5605:Lcor UTSW 19 41,571,302 (GRCm39) missense probably damaging 1.00
R5941:Lcor UTSW 19 41,574,839 (GRCm39) missense probably damaging 1.00
R6020:Lcor UTSW 19 41,571,986 (GRCm39) missense possibly damaging 0.88
R6024:Lcor UTSW 19 41,572,396 (GRCm39) missense possibly damaging 0.84
R6112:Lcor UTSW 19 41,547,520 (GRCm39) missense possibly damaging 0.92
R6149:Lcor UTSW 19 41,573,641 (GRCm39) missense probably damaging 1.00
R6260:Lcor UTSW 19 41,570,810 (GRCm39) missense possibly damaging 0.73
R6260:Lcor UTSW 19 41,570,809 (GRCm39) missense probably null 0.91
R6476:Lcor UTSW 19 41,571,518 (GRCm39) missense probably benign 0.04
R7051:Lcor UTSW 19 41,574,191 (GRCm39) missense probably benign 0.05
R7285:Lcor UTSW 19 41,572,754 (GRCm39) missense possibly damaging 0.91
R7372:Lcor UTSW 19 41,573,945 (GRCm39) missense probably damaging 1.00
R7762:Lcor UTSW 19 41,572,106 (GRCm39) missense probably benign 0.02
R7777:Lcor UTSW 19 41,547,234 (GRCm39) missense probably benign 0.33
R7926:Lcor UTSW 19 41,571,008 (GRCm39) missense probably benign
R8164:Lcor UTSW 19 41,573,849 (GRCm39) missense probably damaging 1.00
R8319:Lcor UTSW 19 41,571,343 (GRCm39) missense probably damaging 1.00
R8323:Lcor UTSW 19 41,572,036 (GRCm39) missense probably benign 0.01
R8327:Lcor UTSW 19 41,570,996 (GRCm39) missense probably damaging 1.00
R8423:Lcor UTSW 19 41,573,888 (GRCm39) missense possibly damaging 0.95
R8556:Lcor UTSW 19 41,546,863 (GRCm39) frame shift probably null
R8780:Lcor UTSW 19 41,573,698 (GRCm39) missense probably damaging 1.00
R8781:Lcor UTSW 19 41,573,698 (GRCm39) missense probably damaging 1.00
R8788:Lcor UTSW 19 41,573,698 (GRCm39) missense probably damaging 1.00
R8798:Lcor UTSW 19 41,573,698 (GRCm39) missense probably damaging 1.00
R9013:Lcor UTSW 19 41,573,189 (GRCm39) missense probably damaging 1.00
R9035:Lcor UTSW 19 41,573,399 (GRCm39) missense probably benign 0.00
R9065:Lcor UTSW 19 41,573,698 (GRCm39) missense probably damaging 1.00
R9067:Lcor UTSW 19 41,573,698 (GRCm39) missense probably damaging 1.00
R9083:Lcor UTSW 19 41,574,839 (GRCm39) missense probably damaging 0.99
R9105:Lcor UTSW 19 41,573,311 (GRCm39) missense possibly damaging 0.88
R9487:Lcor UTSW 19 41,573,685 (GRCm39) missense probably damaging 1.00
R9573:Lcor UTSW 19 41,573,471 (GRCm39) missense probably damaging 1.00
R9704:Lcor UTSW 19 41,572,498 (GRCm39) missense possibly damaging 0.61
X0013:Lcor UTSW 19 41,572,971 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- AGCCAGGGTTTGGATTCATC -3'
(R):5'- AGGAATGCTTTCTGAGGGC -3'

Sequencing Primer
(F):5'- CCGCTGCTTGCTCTGAAATCAAG -3'
(R):5'- TCATCTATCTTGGACCAGACATG -3'
Posted On 2019-12-20