Mutagenetix > Incidental Mutation

Incidental Mutation 'R7835:Chst5'

605923

Institutional Source

Beutler Lab

Gene Symbol

Chst5

Ensembl Gene

ENSMUSG00000031952

Gene Name

carbohydrate sulfotransferase 5

Synonyms

I-GlcNAc6ST, GST-4

MMRRC Submission

045889-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7835 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

112615767-112636831 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 112617234 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Methionine at position 129 (L129M)

Ref Sequence

ENSEMBL: ENSMUSP00000034430 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034430]

AlphaFold

Q9QUP4

Predicted Effect

probably damaging
Transcript: ENSMUST00000034430
AA Change: L129M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000034430
Gene: ENSMUSG00000031952
AA Change: L129M

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:Sulfotransfer_1	40	357	1.2e-25	PFAM
Pfam:Sulfotransfer_3	41	294	4.7e-16	PFAM
low complexity region	363	376	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

98% (48/49)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an enzyme that catalyzes the transfer of a sulfate group to the GlcNAc residues of keratan. Keratan sulfate helps maintain corneal transparency. Defects in this gene are a cause of macular corneal dystrophy (MCD). [provided by RefSeq, Jan 2010]
PHENOTYPE: Homozygous mutation of this gene results in thinner corneas that show abnormally close collagen fibrillar packing. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acan	T	A	7: 78,749,623 (GRCm39)	S1465T	probably benign	Het
Accsl	T	A	2: 93,696,329 (GRCm39)	K90*	probably null	Het
Adamts3	A	T	5: 89,848,299 (GRCm39)	D674E	possibly damaging	Het
Adap2	T	A	11: 80,051,057 (GRCm39)	V129D	probably benign	Het
Ank3	A	G	10: 69,823,557 (GRCm39)	D742G		Het
C1ra	G	A	6: 124,494,684 (GRCm39)	E316K	probably benign	Het
Cachd1	G	T	4: 100,831,350 (GRCm39)		probably null	Het
Ccne1	G	T	7: 37,802,270 (GRCm39)	Q133K	probably benign	Het
Cers3	C	T	7: 66,423,387 (GRCm39)	H111Y	possibly damaging	Het
Depdc7	A	G	2: 104,558,530 (GRCm39)	S164P	probably benign	Het
Dnah10	G	A	5: 124,854,298 (GRCm39)	A1966T	probably damaging	Het
Fcgbp	T	G	7: 27,816,632 (GRCm39)	S2365A	possibly damaging	Het
Ihh	A	G	1: 74,985,525 (GRCm39)	V320A	probably damaging	Het
Kdm5d	T	C	Y: 900,558 (GRCm39)	V201A	possibly damaging	Het
Kif13b	T	A	14: 65,004,901 (GRCm39)	H1117Q	probably benign	Het
Lcn8	C	A	2: 25,545,308 (GRCm39)		probably null	Het
Lrp4	T	C	2: 91,325,387 (GRCm39)	V1404A	possibly damaging	Het
Lrrc61	A	T	6: 48,545,506 (GRCm39)	T110S	probably benign	Het
Mrpl19	G	A	6: 81,939,107 (GRCm39)	R232C	probably damaging	Het
Muc5ac	G	C	7: 141,363,040 (GRCm39)	G2117A	unknown	Het
Mzt1	T	C	14: 99,283,439 (GRCm39)	T21A	probably benign	Het
Naip6	G	T	13: 100,452,512 (GRCm39)	A183E	probably benign	Het
Neb	T	C	2: 52,040,589 (GRCm39)	D6624G	probably benign	Het
Nup85	A	G	11: 115,460,897 (GRCm39)	D183G	probably benign	Het
Olfm5	A	T	7: 103,803,652 (GRCm39)	Y195*	probably null	Het
Or7g16	T	A	9: 18,727,105 (GRCm39)	M162L	probably benign	Het
Piezo2	A	T	18: 63,216,016 (GRCm39)	F1216I	probably benign	Het
Pkd1l3	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	8: 110,350,827 (GRCm39)		probably benign	Het
Polr1a	T	C	6: 71,892,126 (GRCm39)	V135A	probably benign	Het
Ppcdc	A	G	9: 57,327,559 (GRCm39)	S83P	probably benign	Het
Prss21	A	T	17: 24,088,425 (GRCm39)	Q130L	possibly damaging	Het
Rdx	T	A	9: 51,977,088 (GRCm39)	N112K	probably damaging	Het
Rgs22	A	G	15: 36,082,057 (GRCm39)		probably null	Het
Rps23rg1	A	G	8: 3,630,452 (GRCm39)		probably benign	Het
Rps26	C	T	10: 128,461,995 (GRCm39)	V40I	probably benign	Het
Runx2	A	T	17: 44,919,123 (GRCm39)	M405K	probably damaging	Het
Serinc2	A	C	4: 130,169,280 (GRCm39)	C4G	unknown	Het
Sh3rf2	C	A	18: 42,244,235 (GRCm39)	R266S	probably benign	Het
Slc38a10	A	G	11: 120,007,822 (GRCm39)	I386T	possibly damaging	Het
Stab2	G	A	10: 86,708,483 (GRCm39)	P1694L	probably benign	Het
Taf4	G	A	2: 179,573,822 (GRCm39)	T682M	probably damaging	Het
Tasor	G	T	14: 27,198,600 (GRCm39)	G1311C	probably damaging	Het
Tmem102	A	G	11: 69,695,171 (GRCm39)	V267A	probably damaging	Het
Trim65	A	G	11: 116,021,755 (GRCm39)	L26P	probably damaging	Het
Vmn1r160	T	A	7: 22,571,379 (GRCm39)	M244K	possibly damaging	Het
Vmn1r57	A	T	7: 5,224,138 (GRCm39)	H221L	probably benign	Het
Wdr89	C	A	12: 75,679,673 (GRCm39)	V194F	probably damaging	Het
Wee1	C	A	7: 109,730,085 (GRCm39)	Y396*	probably null	Het
Zfp451	A	T	1: 33,812,060 (GRCm39)	V885D	probably damaging	Het
Zfp981	A	T	4: 146,622,333 (GRCm39)	Q419H	probably benign	Het
Znfx1	A	G	2: 166,881,747 (GRCm39)	Y1081H	probably damaging	Het

Other mutations in Chst5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01146:Chst5	APN	8	112,617,314 (GRCm39)	missense	probably damaging	1.00
IGL02336:Chst5	APN	8	112,616,949 (GRCm39)	missense	probably damaging	0.99
IGL02634:Chst5	APN	8	112,617,477 (GRCm39)	missense	probably damaging	1.00
R0606:Chst5	UTSW	8	112,617,551 (GRCm39)	missense	probably benign	0.05
R1552:Chst5	UTSW	8	112,616,912 (GRCm39)	missense	probably damaging	0.99
R2094:Chst5	UTSW	8	112,617,176 (GRCm39)	missense	probably benign	0.01
R3769:Chst5	UTSW	8	112,616,513 (GRCm39)	missense	possibly damaging	0.67
R4135:Chst5	UTSW	8	112,616,816 (GRCm39)	missense	probably damaging	1.00
R4872:Chst5	UTSW	8	112,617,192 (GRCm39)	missense	possibly damaging	0.61
R5658:Chst5	UTSW	8	112,617,422 (GRCm39)	missense	probably damaging	1.00
R5759:Chst5	UTSW	8	112,616,842 (GRCm39)	missense	probably benign	0.25
R5893:Chst5	UTSW	8	112,616,828 (GRCm39)	missense	probably damaging	1.00
R6657:Chst5	UTSW	8	112,616,906 (GRCm39)	missense	probably benign	0.00
R6731:Chst5	UTSW	8	112,616,676 (GRCm39)	missense	probably benign	0.00
R7406:Chst5	UTSW	8	112,617,245 (GRCm39)	missense	probably benign	0.00
R7535:Chst5	UTSW	8	112,616,795 (GRCm39)	missense	probably damaging	1.00
R7727:Chst5	UTSW	8	112,617,557 (GRCm39)	missense	probably benign	0.25
R7843:Chst5	UTSW	8	112,617,204 (GRCm39)	missense	probably benign	0.00
R8257:Chst5	UTSW	8	112,617,092 (GRCm39)	missense	probably damaging	1.00
R8324:Chst5	UTSW	8	112,617,140 (GRCm39)	missense	probably benign	0.06
R8444:Chst5	UTSW	8	112,617,395 (GRCm39)	missense	probably damaging	1.00
R8458:Chst5	UTSW	8	112,617,422 (GRCm39)	missense	probably damaging	1.00
R9001:Chst5	UTSW	8	112,616,534 (GRCm39)	missense	probably benign
R9223:Chst5	UTSW	8	112,617,492 (GRCm39)	missense	probably benign	0.13
R9517:Chst5	UTSW	8	112,616,652 (GRCm39)	missense	possibly damaging	0.76

Predicted Primers

PCR Primer
(F):5'- TACCCAGGACGATGCCATTG -3'
(R):5'- CCGATGTCTTCTACCTGATGG -3'

Sequencing Primer
(F):5'- ACGATGCCATTGTCCCGTG -3'
(R):5'- ATGTCTTCTACCTGATGGAGCCG -3'

Posted On

2019-12-20