Mutagenetix > Incidental Mutation

Incidental Mutation 'R7835:Chst5'

605923

Institutional Source

Beutler Lab

Gene Symbol

Chst5

Ensembl Gene

ENSMUSG00000031952

Gene Name

carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5

Synonyms

GST-4, I-GlcNAc6ST

MMRRC Submission

045889-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7835 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

111889136-111910447 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 111890602 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Methionine at position 129 (L129M)

Ref Sequence

ENSEMBL: ENSMUSP00000034430 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034430]

AlphaFold

Q9QUP4

Predicted Effect

probably damaging
Transcript: ENSMUST00000034430
AA Change: L129M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000034430
Gene: ENSMUSG00000031952
AA Change: L129M

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:Sulfotransfer_1	40	357	1.2e-25	PFAM
Pfam:Sulfotransfer_3	41	294	4.7e-16	PFAM
low complexity region	363	376	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

98% (48/49)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an enzyme that catalyzes the transfer of a sulfate group to the GlcNAc residues of keratan. Keratan sulfate helps maintain corneal transparency. Defects in this gene are a cause of macular corneal dystrophy (MCD). [provided by RefSeq, Jan 2010]
PHENOTYPE: Homozygous mutation of this gene results in thinner corneas that show abnormally close collagen fibrillar packing. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acan	T	A	7: 79,099,875 (GRCm38)	S1465T	probably benign	Het
Accsl	T	A	2: 93,865,984 (GRCm38)	K90*	probably null	Het
Adamts3	A	T	5: 89,700,440 (GRCm38)	D674E	possibly damaging	Het
Adap2	T	A	11: 80,160,231 (GRCm38)	V129D	probably benign	Het
Ank3	A	G	10: 69,987,727 (GRCm38)	D742G		Het
C1ra	G	A	6: 124,517,725 (GRCm38)	E316K	probably benign	Het
C330021F23Rik	A	G	8: 3,580,452 (GRCm38)		probably benign	Het
Cachd1	G	T	4: 100,974,153 (GRCm38)		probably null	Het
Ccne1	G	T	7: 38,102,845 (GRCm38)	Q133K	probably benign	Het
Cers3	C	T	7: 66,773,639 (GRCm38)	H111Y	possibly damaging	Het
Depdc7	A	G	2: 104,728,185 (GRCm38)	S164P	probably benign	Het
Dnah10	G	A	5: 124,777,234 (GRCm38)	A1966T	probably damaging	Het
Fam208a	G	T	14: 27,476,643 (GRCm38)	G1311C	probably damaging	Het
Fcgbp	T	G	7: 28,117,207 (GRCm38)	S2365A	possibly damaging	Het
Ihh	A	G	1: 74,946,366 (GRCm38)	V320A	probably damaging	Het
Kdm5d	T	C	Y: 900,558 (GRCm38)	V201A	possibly damaging	Het
Kif13b	T	A	14: 64,767,452 (GRCm38)	H1117Q	probably benign	Het
Lcn8	C	A	2: 25,655,296 (GRCm38)		probably null	Het
Lrp4	T	C	2: 91,495,042 (GRCm38)	V1404A	possibly damaging	Het
Lrrc61	A	T	6: 48,568,572 (GRCm38)	T110S	probably benign	Het
Mrpl19	G	A	6: 81,962,126 (GRCm38)	R232C	probably damaging	Het
Muc5ac	G	C	7: 141,809,303 (GRCm38)	G2117A	unknown	Het
Mzt1	T	C	14: 99,046,003 (GRCm38)	T21A	probably benign	Het
Naip6	G	T	13: 100,316,004 (GRCm38)	A183E	probably benign	Het
Neb	T	C	2: 52,150,577 (GRCm38)	D6624G	probably benign	Het
Nup85	A	G	11: 115,570,071 (GRCm38)	D183G	probably benign	Het
Olfm5	A	T	7: 104,154,445 (GRCm38)	Y195*	probably null	Het
Olfr828	T	A	9: 18,815,809 (GRCm38)	M162L	probably benign	Het
Piezo2	A	T	18: 63,082,945 (GRCm38)	F1216I	probably benign	Het
Pkd1l3	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	8: 109,624,195 (GRCm38)		probably benign	Het
Polr1a	T	C	6: 71,915,142 (GRCm38)	V135A	probably benign	Het
Ppcdc	A	G	9: 57,420,276 (GRCm38)	S83P	probably benign	Het
Prss21	A	T	17: 23,869,451 (GRCm38)	Q130L	possibly damaging	Het
Rdx	T	A	9: 52,065,788 (GRCm38)	N112K	probably damaging	Het
Rgs22	A	G	15: 36,081,911 (GRCm38)		probably null	Het
Rps26	C	T	10: 128,626,126 (GRCm38)	V40I	probably benign	Het
Runx2	A	T	17: 44,608,236 (GRCm38)	M405K	probably damaging	Het
Serinc2	A	C	4: 130,275,487 (GRCm38)	C4G	unknown	Het
Sh3rf2	C	A	18: 42,111,170 (GRCm38)	R266S	probably benign	Het
Slc38a10	A	G	11: 120,116,996 (GRCm38)	I386T	possibly damaging	Het
Stab2	G	A	10: 86,872,619 (GRCm38)	P1694L	probably benign	Het
Taf4	G	A	2: 179,932,029 (GRCm38)	T682M	probably damaging	Het
Tmem102	A	G	11: 69,804,345 (GRCm38)	V267A	probably damaging	Het
Trim65	A	G	11: 116,130,929 (GRCm38)	L26P	probably damaging	Het
Vmn1r160	T	A	7: 22,871,954 (GRCm38)	M244K	possibly damaging	Het
Vmn1r57	A	T	7: 5,221,139 (GRCm38)	H221L	probably benign	Het
Wdr89	C	A	12: 75,632,899 (GRCm38)	V194F	probably damaging	Het
Wee1	C	A	7: 110,130,878 (GRCm38)	Y396*	probably null	Het
Zfp451	A	T	1: 33,772,979 (GRCm38)	V885D	probably damaging	Het
Zfp981	A	T	4: 146,537,876 (GRCm38)	Q419H	probably benign	Het
Znfx1	A	G	2: 167,039,827 (GRCm38)	Y1081H	probably damaging	Het

Other mutations in Chst5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01146:Chst5	APN	8	111,890,682 (GRCm38)	missense	probably damaging	1.00
IGL02336:Chst5	APN	8	111,890,317 (GRCm38)	missense	probably damaging	0.99
IGL02634:Chst5	APN	8	111,890,845 (GRCm38)	missense	probably damaging	1.00
R0606:Chst5	UTSW	8	111,890,919 (GRCm38)	missense	probably benign	0.05
R1552:Chst5	UTSW	8	111,890,280 (GRCm38)	missense	probably damaging	0.99
R2094:Chst5	UTSW	8	111,890,544 (GRCm38)	missense	probably benign	0.01
R3769:Chst5	UTSW	8	111,889,881 (GRCm38)	missense	possibly damaging	0.67
R4135:Chst5	UTSW	8	111,890,184 (GRCm38)	missense	probably damaging	1.00
R4872:Chst5	UTSW	8	111,890,560 (GRCm38)	missense	possibly damaging	0.61
R5658:Chst5	UTSW	8	111,890,790 (GRCm38)	missense	probably damaging	1.00
R5759:Chst5	UTSW	8	111,890,210 (GRCm38)	missense	probably benign	0.25
R5893:Chst5	UTSW	8	111,890,196 (GRCm38)	missense	probably damaging	1.00
R6657:Chst5	UTSW	8	111,890,274 (GRCm38)	missense	probably benign	0.00
R6731:Chst5	UTSW	8	111,890,044 (GRCm38)	missense	probably benign	0.00
R7406:Chst5	UTSW	8	111,890,613 (GRCm38)	missense	probably benign	0.00
R7535:Chst5	UTSW	8	111,890,163 (GRCm38)	missense	probably damaging	1.00
R7727:Chst5	UTSW	8	111,890,925 (GRCm38)	missense	probably benign	0.25
R7843:Chst5	UTSW	8	111,890,572 (GRCm38)	missense	probably benign	0.00
R8257:Chst5	UTSW	8	111,890,460 (GRCm38)	missense	probably damaging	1.00
R8324:Chst5	UTSW	8	111,890,508 (GRCm38)	missense	probably benign	0.06
R8444:Chst5	UTSW	8	111,890,763 (GRCm38)	missense	probably damaging	1.00
R8458:Chst5	UTSW	8	111,890,790 (GRCm38)	missense	probably damaging	1.00
R9001:Chst5	UTSW	8	111,889,902 (GRCm38)	missense	probably benign
R9223:Chst5	UTSW	8	111,890,860 (GRCm38)	missense	probably benign	0.13
R9517:Chst5	UTSW	8	111,890,020 (GRCm38)	missense	possibly damaging	0.76

Predicted Primers

PCR Primer
(F):5'- TACCCAGGACGATGCCATTG -3'
(R):5'- CCGATGTCTTCTACCTGATGG -3'

Sequencing Primer
(F):5'- ACGATGCCATTGTCCCGTG -3'
(R):5'- ATGTCTTCTACCTGATGGAGCCG -3'

Posted On

2019-12-20