Incidental Mutation 'R7836:Nfil3'
ID 605998
Institutional Source Beutler Lab
Gene Symbol Nfil3
Ensembl Gene ENSMUSG00000056749
Gene Name nuclear factor, interleukin 3, regulated
Synonyms E4BP4
MMRRC Submission 045890-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7836 (G1)
Quality Score 225.009
Status Validated
Chromosome 13
Chromosomal Location 53121245-53135109 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 53121968 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 312 (V312A)
Ref Sequence ENSEMBL: ENSMUSP00000065363 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000071065]
AlphaFold O08750
Predicted Effect possibly damaging
Transcript: ENSMUST00000071065
AA Change: V312A

PolyPhen 2 Score 0.555 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000065363
Gene: ENSMUSG00000056749
AA Change: V312A

DomainStartEndE-ValueType
BRLZ 71 135 2.84e-5 SMART
low complexity region 182 196 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.3%
Validation Efficiency 99% (76/77)
MGI Phenotype FUNCTION: The protein encoded by this gene is a transcriptional regulator that binds as a homodimer to activating transcription factor (ATF) sites in many cellular and viral promoters. The encoded protein represses Per1 and Per2 expression and therefore plays a role in the regulation of circadian rhythm. [provided by RefSeq, Feb 2014]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased NK cell differentiation, numbers, and activity. Mice homozygous for a different knock-out allele exhibit reduced class switching and IgE production. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 77 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb4 T G 5: 8,984,203 (GRCm39) S644R probably benign Het
Adra2a A G 19: 54,034,659 (GRCm39) E5G probably benign Het
Ankrd1 A T 19: 36,092,922 (GRCm39) V201D possibly damaging Het
Ano9 A T 7: 140,683,114 (GRCm39) V598E probably damaging Het
Apob T A 12: 8,051,885 (GRCm39) M1150K possibly damaging Het
BC005624 A T 2: 30,864,032 (GRCm39) I187N probably damaging Het
Bltp3b C T 10: 89,651,968 (GRCm39) T1381I probably benign Het
Ccl9 T C 11: 83,467,257 (GRCm39) E31G probably benign Het
Cnnm4 T A 1: 36,511,019 (GRCm39) D82E probably benign Het
Coq10b T C 1: 55,092,013 (GRCm39) probably benign Het
Cplane1 T G 15: 8,233,241 (GRCm39) F1189V probably damaging Het
Cyb561 T C 11: 105,830,935 (GRCm39) N50S probably benign Het
Dctn4 G T 18: 60,679,348 (GRCm39) A223S probably benign Het
Dysf A G 6: 84,114,380 (GRCm39) Y1223C probably damaging Het
Eed C T 7: 89,630,022 (GRCm39) probably benign Het
Eef1g T A 19: 8,954,738 (GRCm39) V305E probably benign Het
Eif4ebp2 C A 10: 61,270,772 (GRCm39) A86S probably benign Het
Ermp1 T C 19: 29,609,788 (GRCm39) probably null Het
Hid1 T C 11: 115,249,821 (GRCm39) Y198C probably damaging Het
Hoxd1 C A 2: 74,593,816 (GRCm39) A124E probably benign Het
Hyal5 G A 6: 24,891,347 (GRCm39) C387Y probably damaging Het
Il11 A G 7: 4,778,999 (GRCm39) S103P probably damaging Het
Lgalsl2 A T 7: 5,362,507 (GRCm39) K46M probably damaging Het
Lmtk3 A C 7: 45,436,327 (GRCm39) I128L possibly damaging Het
Lrrc4b G T 7: 44,094,316 (GRCm39) probably benign Het
Magel2 T A 7: 62,028,116 (GRCm39) I340N possibly damaging Het
Mfsd14a A T 3: 116,442,200 (GRCm39) F71I possibly damaging Het
Mgarp A G 3: 51,296,487 (GRCm39) S172P probably benign Het
Mug1 T C 6: 121,847,611 (GRCm39) probably null Het
Naa15 G T 3: 51,370,688 (GRCm39) E651* probably null Het
Ndfip2 T C 14: 105,529,675 (GRCm39) V168A probably benign Het
Neb C A 2: 52,113,373 (GRCm39) probably null Het
Nrap T C 19: 56,338,729 (GRCm39) I953V probably benign Het
Ntrk1 T A 3: 87,687,041 (GRCm39) K706* probably null Het
Nuf2 A T 1: 169,352,898 (GRCm39) F36I probably benign Het
Or51h7 T A 7: 102,591,125 (GRCm39) T220S possibly damaging Het
Or5aq7 T C 2: 86,937,861 (GRCm39) Y290C probably damaging Het
Pcdh8 T G 14: 80,006,101 (GRCm39) T821P possibly damaging Het
Ppl C T 16: 4,906,725 (GRCm39) R1190H probably damaging Het
Ptch2 C A 4: 116,962,224 (GRCm39) probably null Het
Ptdss1 A G 13: 67,081,719 (GRCm39) I50V probably benign Het
Pth2r G T 1: 65,390,722 (GRCm39) W292L probably damaging Het
Ptprd G A 4: 75,900,881 (GRCm39) T825M probably damaging Het
Ptprk T C 10: 28,449,385 (GRCm39) Y987H probably damaging Het
Qser1 T C 2: 104,606,579 (GRCm39) E1470G probably damaging Het
Rab11fip3 T C 17: 26,287,232 (GRCm39) E307G possibly damaging Het
Rims2 A G 15: 39,544,475 (GRCm39) Y1484C probably damaging Het
Rock1 A T 18: 10,097,651 (GRCm39) probably null Het
Slc15a1 T A 14: 121,718,145 (GRCm39) K245* probably null Het
Snx11 T A 11: 96,660,032 (GRCm39) E219V possibly damaging Het
Sox21 C A 14: 118,472,729 (GRCm39) E107* probably null Het
Spink5 T A 18: 44,132,888 (GRCm39) H501Q probably benign Het
Stard5 C T 7: 83,285,984 (GRCm39) T103M probably damaging Het
Stfa2l1 A T 16: 35,977,203 (GRCm39) probably benign Het
Sult1c2 A C 17: 54,271,076 (GRCm39) V185G probably damaging Het
Svs5 A G 2: 164,079,500 (GRCm39) S136P possibly damaging Het
Sytl3 T A 17: 6,982,774 (GRCm39) probably null Het
Tc2n C T 12: 101,619,112 (GRCm39) V349I possibly damaging Het
Tln1 A G 4: 43,554,309 (GRCm39) V271A probably benign Het
Tmem260 T A 14: 48,746,519 (GRCm39) S446R probably benign Het
Trim30a T C 7: 104,084,802 (GRCm39) D136G probably benign Het
Ulk4 A T 9: 120,873,885 (GRCm39) I1182N possibly damaging Het
Unc50 T G 1: 37,476,377 (GRCm39) I179S possibly damaging Het
Upb1 T A 10: 75,248,667 (GRCm39) Y57* probably null Het
Usp34 C T 11: 23,396,614 (GRCm39) T2349I Het
Vmn1r71 A G 7: 10,482,277 (GRCm39) V137A possibly damaging Het
Vmn1r85 T C 7: 12,818,698 (GRCm39) I149V probably benign Het
Vmn2r118 A G 17: 55,900,242 (GRCm39) L554P probably damaging Het
Wdr4 C G 17: 31,718,782 (GRCm39) probably null Het
Zbbx A T 3: 74,985,781 (GRCm39) S424T possibly damaging Het
Zfp207 C G 11: 80,282,726 (GRCm39) P246A probably damaging Het
Zfp414 T A 17: 33,848,962 (GRCm39) Y65* probably null Het
Zfp600 T A 4: 146,133,523 (GRCm39) N730K probably benign Het
Zfp827 T C 8: 79,912,979 (GRCm39) L1073P probably damaging Het
Zfp986 A G 4: 145,625,691 (GRCm39) K117R possibly damaging Het
Zgrf1 T A 3: 127,357,080 (GRCm39) Y769N probably damaging Het
Zup1 A T 10: 33,795,315 (GRCm39) I547N unknown Het
Other mutations in Nfil3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00468:Nfil3 APN 13 53,121,610 (GRCm39) missense probably damaging 1.00
IGL01017:Nfil3 APN 13 53,122,055 (GRCm39) missense probably damaging 1.00
IGL02158:Nfil3 APN 13 53,122,188 (GRCm39) missense probably damaging 0.99
luna UTSW 13 53,122,712 (GRCm39) missense probably damaging 1.00
R0140:Nfil3 UTSW 13 53,121,681 (GRCm39) nonsense probably null
R2080:Nfil3 UTSW 13 53,122,069 (GRCm39) missense possibly damaging 0.53
R4235:Nfil3 UTSW 13 53,122,835 (GRCm39) missense probably benign 0.08
R4773:Nfil3 UTSW 13 53,122,050 (GRCm39) missense probably damaging 0.99
R5002:Nfil3 UTSW 13 53,122,712 (GRCm39) missense probably damaging 1.00
R5155:Nfil3 UTSW 13 53,122,616 (GRCm39) missense probably damaging 1.00
R5309:Nfil3 UTSW 13 53,121,656 (GRCm39) missense probably damaging 0.98
R5312:Nfil3 UTSW 13 53,121,656 (GRCm39) missense probably damaging 0.98
R5404:Nfil3 UTSW 13 53,122,091 (GRCm39) missense probably damaging 1.00
R5679:Nfil3 UTSW 13 53,122,527 (GRCm39) missense possibly damaging 0.79
R5855:Nfil3 UTSW 13 53,122,746 (GRCm39) missense probably benign 0.05
R6855:Nfil3 UTSW 13 53,122,641 (GRCm39) nonsense probably null
R7870:Nfil3 UTSW 13 53,122,449 (GRCm39) missense probably damaging 0.99
R8394:Nfil3 UTSW 13 53,121,849 (GRCm39) missense probably benign 0.09
R8713:Nfil3 UTSW 13 53,122,047 (GRCm39) missense possibly damaging 0.94
R9008:Nfil3 UTSW 13 53,121,609 (GRCm39) missense probably damaging 1.00
R9143:Nfil3 UTSW 13 53,121,792 (GRCm39) missense probably benign
R9733:Nfil3 UTSW 13 53,121,591 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CACCTGCACTGAGAAAGGAG -3'
(R):5'- ATGGGAAGCTCTTTCTCCAC -3'

Sequencing Primer
(F):5'- CCATACCCGAGGTTCCATG -3'
(R):5'- ATGGGAAGCTCTTTCTCCACTTACTC -3'
Posted On 2019-12-20