Incidental Mutation 'R7842:Flt3'
ID 606375
Institutional Source Beutler Lab
Gene Symbol Flt3
Ensembl Gene ENSMUSG00000042817
Gene Name FMS-like tyrosine kinase 3
Synonyms CD135, Flk-2, Flt-3, Flk2, wmfl
MMRRC Submission 045896-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7842 (G1)
Quality Score 225.009
Status Validated
Chromosome 5
Chromosomal Location 147267551-147337299 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 147271263 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Proline to Serine at position 893 (P893S)
Ref Sequence ENSEMBL: ENSMUSP00000039041 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000049324]
AlphaFold no structure available at present
Predicted Effect probably damaging
Transcript: ENSMUST00000049324
AA Change: P893S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000039041
Gene: ENSMUSG00000042817
AA Change: P893S

DomainStartEndE-ValueType
low complexity region 10 18 N/A INTRINSIC
IG 79 162 1.87e0 SMART
IG 258 346 2.57e0 SMART
internal_repeat_1 380 529 8.53e-14 PROSPERO
TyrKc 611 946 1.7e-140 SMART
Meta Mutation Damage Score 0.5753 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency 99% (77/78)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a class III receptor tyrosine kinase that regulates hematopoiesis. This receptor is activated by binding of the fms-related tyrosine kinase 3 ligand to the extracellular domain, which induces homodimer formation in the plasma membrane leading to autophosphorylation of the receptor. The activated receptor kinase subsequently phosphorylates and activates multiple cytoplasmic effector molecules in pathways involved in apoptosis, proliferation, and differentiation of hematopoietic cells in bone marrow. Mutations that result in the constitutive activation of this receptor result in acute myeloid leukemia and acute lymphoblastic leukemia. [provided by RefSeq, Jan 2015]
PHENOTYPE: Mice functionally null for this gene display abnormal lymphopoiesis. Homozygous ENU mutant mice are sensitive to infection by mouse cytomegalovirus. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 79 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700034J05Rik T C 6: 146,855,034 (GRCm39) T3A unknown Het
4933412E24Rik T C 15: 59,888,422 (GRCm39) E6G probably damaging Het
Abca6 A G 11: 110,087,523 (GRCm39) L1135P possibly damaging Het
Agps A G 2: 75,681,876 (GRCm39) D113G probably damaging Het
Ankhd1 G T 18: 36,780,881 (GRCm39) V1978L probably benign Het
Ankrd31 T A 13: 96,957,966 (GRCm39) probably null Het
Arhgap5 T A 12: 52,565,480 (GRCm39) M817K possibly damaging Het
Bdp1 C A 13: 100,235,637 (GRCm39) V105F probably damaging Het
Brdt A G 5: 107,496,454 (GRCm39) N189D possibly damaging Het
Ccdc180 A T 4: 45,909,428 (GRCm39) N532I probably benign Het
Ccnc A C 4: 21,730,480 (GRCm39) K39T probably damaging Het
Cfap251 T C 5: 123,392,487 (GRCm39) V207A unknown Het
Cfap57 C A 4: 118,411,952 (GRCm39) G1231* probably null Het
Chd7 A T 4: 8,854,115 (GRCm39) T1896S probably benign Het
Clk4 A T 11: 51,171,956 (GRCm39) H412L probably benign Het
Creld1 T C 6: 113,465,100 (GRCm39) L109P probably damaging Het
Cxxc4 A T 3: 133,946,093 (GRCm39) I225L possibly damaging Het
Cyp4f39 A T 17: 32,702,291 (GRCm39) R263W probably benign Het
Dennd10 G A 19: 60,819,317 (GRCm39) A263T not run Het
Dip2c T C 13: 9,656,569 (GRCm39) probably null Het
Dnah14 A G 1: 181,455,463 (GRCm39) T863A probably damaging Het
Dnah17 C A 11: 117,970,508 (GRCm39) probably null Het
Dnajc10 A G 2: 80,175,409 (GRCm39) K599E probably benign Het
Dnajc7 C A 11: 100,489,544 (GRCm39) R101L probably benign Het
Dnttip2 G A 3: 122,069,990 (GRCm39) E402K probably benign Het
Dusp22 T A 13: 30,852,774 (GRCm39) probably null Het
Egflam C A 15: 7,280,675 (GRCm39) R450M probably null Het
Eml5 C T 12: 98,760,394 (GRCm39) R1785Q probably damaging Het
Fam78b G T 1: 166,829,178 (GRCm39) R15L probably damaging Het
Fbxl5 A T 5: 43,915,945 (GRCm39) I489N probably damaging Het
Gm17019 T C 5: 15,081,049 (GRCm39) M131V possibly damaging Het
Gm21560 T A 14: 6,216,262 (GRCm38) I194F probably benign Het
Gm28729 T C 9: 96,399,705 (GRCm39) D158G probably damaging Het
Gucy2c C T 6: 136,746,814 (GRCm39) probably null Het
Hectd1 C T 12: 51,819,343 (GRCm39) G1247S probably damaging Het
Ireb2 T A 9: 54,816,970 (GRCm39) I946K probably benign Het
Itgb4 A T 11: 115,873,531 (GRCm39) D249V probably benign Het
Klhdc7a A G 4: 139,694,549 (GRCm39) S133P probably damaging Het
Lsr A T 7: 30,665,437 (GRCm39) D172E possibly damaging Het
Macf1 T C 4: 123,420,702 (GRCm39) E184G probably benign Het
Map2 T A 1: 66,455,570 (GRCm39) D1421E probably benign Het
Map3k4 A T 17: 12,490,030 (GRCm39) L467H possibly damaging Het
Mogat1 T C 1: 78,499,502 (GRCm39) probably null Het
Mxra8 A G 4: 155,927,367 (GRCm39) D384G probably damaging Het
Myo15b A G 11: 115,762,321 (GRCm39) T1214A Het
Naip1 T C 13: 100,563,506 (GRCm39) Y553C probably damaging Het
Nln A T 13: 104,189,137 (GRCm39) I278K probably benign Het
Nsmaf T A 4: 6,435,109 (GRCm39) probably null Het
Nynrin A G 14: 56,102,553 (GRCm39) R741G probably damaging Het
Or4p8 A G 2: 88,727,305 (GRCm39) V212A possibly damaging Het
Or52e19b A G 7: 103,032,783 (GRCm39) V142A probably benign Het
Or5d38 C T 2: 87,955,330 (GRCm39) probably benign Het
Or8j3 G T 2: 86,028,516 (GRCm39) Y193* probably null Het
Orc1 A G 4: 108,462,744 (GRCm39) H607R probably benign Het
Pate2 A T 9: 35,581,829 (GRCm39) Y41F probably damaging Het
Pcdhb20 A T 18: 37,638,112 (GRCm39) T213S possibly damaging Het
Pcm1 G A 8: 41,780,621 (GRCm39) E1858K possibly damaging Het
Pla2g2d A G 4: 138,506,089 (GRCm39) T59A probably damaging Het
Ppl C T 16: 4,906,725 (GRCm39) R1190H probably damaging Het
Prl2c2 A G 13: 13,179,907 (GRCm39) L2P probably benign Het
Proz G A 8: 13,113,406 (GRCm39) V76I probably benign Het
Prr36 A G 8: 4,260,953 (GRCm39) S955P probably benign Het
Pter T C 2: 12,983,352 (GRCm39) V119A probably damaging Het
Qrich1 T A 9: 108,433,567 (GRCm39) probably null Het
Rbm15b T C 9: 106,763,088 (GRCm39) E360G probably damaging Het
Skint11 G A 4: 114,101,968 (GRCm39) C327Y possibly damaging Het
Spag17 T A 3: 99,961,174 (GRCm39) S987T probably benign Het
Spata31f3 TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG 4: 42,871,823 (GRCm39) probably benign Het
Tbx1 T C 16: 18,405,365 (GRCm39) S100G unknown Het
Tiam2 C T 17: 3,568,399 (GRCm39) S1515L possibly damaging Het
Togaram1 C A 12: 65,013,233 (GRCm39) D161E probably damaging Het
Trhde A T 10: 114,532,003 (GRCm39) S366T possibly damaging Het
Ttc12 A G 9: 49,349,724 (GRCm39) I691T possibly damaging Het
Ube4a A G 9: 44,861,025 (GRCm39) probably null Het
Uggt2 A T 14: 119,235,516 (GRCm39) I1453N probably damaging Het
Unc79 T C 12: 103,058,313 (GRCm39) S972P probably damaging Het
Wdr20 G A 12: 110,704,649 (GRCm39) D63N probably benign Het
Wls T A 3: 159,578,816 (GRCm39) I126N probably benign Het
Xirp2 A G 2: 67,355,289 (GRCm39) D3350G probably benign Het
Other mutations in Flt3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00089:Flt3 APN 5 147,291,686 (GRCm39) missense probably damaging 1.00
IGL01083:Flt3 APN 5 147,291,680 (GRCm39) missense probably damaging 1.00
IGL01749:Flt3 APN 5 147,294,838 (GRCm39) missense probably benign 0.02
IGL01765:Flt3 APN 5 147,294,788 (GRCm39) missense probably benign
IGL02109:Flt3 APN 5 147,287,491 (GRCm39) missense probably benign 0.00
IGL02490:Flt3 APN 5 147,268,106 (GRCm39) missense probably damaging 1.00
IGL02631:Flt3 APN 5 147,281,362 (GRCm39) missense probably damaging 1.00
IGL03117:Flt3 APN 5 147,293,020 (GRCm39) missense probably benign
flick UTSW 5 147,278,048 (GRCm39) missense probably damaging 1.00
warmflash UTSW 5 147,303,728 (GRCm39) critical splice donor site probably null
R0070:Flt3 UTSW 5 147,309,536 (GRCm39) splice site probably benign
R0070:Flt3 UTSW 5 147,309,536 (GRCm39) splice site probably benign
R0320:Flt3 UTSW 5 147,306,389 (GRCm39) splice site probably benign
R0347:Flt3 UTSW 5 147,294,802 (GRCm39) missense probably damaging 1.00
R0512:Flt3 UTSW 5 147,278,080 (GRCm39) nonsense probably null
R0968:Flt3 UTSW 5 147,278,037 (GRCm39) missense possibly damaging 0.46
R1180:Flt3 UTSW 5 147,278,048 (GRCm39) missense probably damaging 1.00
R1266:Flt3 UTSW 5 147,293,670 (GRCm39) missense probably benign 0.00
R1562:Flt3 UTSW 5 147,281,323 (GRCm39) missense probably damaging 1.00
R1803:Flt3 UTSW 5 147,303,865 (GRCm39) nonsense probably null
R2000:Flt3 UTSW 5 147,278,048 (GRCm39) missense probably damaging 1.00
R2021:Flt3 UTSW 5 147,306,300 (GRCm39) missense probably damaging 0.98
R2079:Flt3 UTSW 5 147,291,893 (GRCm39) missense probably damaging 0.97
R2261:Flt3 UTSW 5 147,284,873 (GRCm39) missense probably benign 0.00
R2263:Flt3 UTSW 5 147,284,873 (GRCm39) missense probably benign 0.00
R3087:Flt3 UTSW 5 147,284,856 (GRCm39) missense probably benign 0.15
R3727:Flt3 UTSW 5 147,291,733 (GRCm39) missense probably damaging 0.96
R3939:Flt3 UTSW 5 147,293,053 (GRCm39) missense possibly damaging 0.87
R4469:Flt3 UTSW 5 147,312,454 (GRCm39) splice site silent
R4527:Flt3 UTSW 5 147,293,163 (GRCm39) missense probably benign 0.37
R4592:Flt3 UTSW 5 147,291,509 (GRCm39) missense possibly damaging 0.67
R4655:Flt3 UTSW 5 147,286,403 (GRCm39) missense possibly damaging 0.51
R4686:Flt3 UTSW 5 147,313,858 (GRCm39) missense probably damaging 1.00
R4867:Flt3 UTSW 5 147,271,250 (GRCm39) missense probably damaging 1.00
R4897:Flt3 UTSW 5 147,306,110 (GRCm39) missense probably damaging 1.00
R4941:Flt3 UTSW 5 147,293,185 (GRCm39) critical splice acceptor site probably null
R5254:Flt3 UTSW 5 147,312,500 (GRCm39) missense possibly damaging 0.60
R5325:Flt3 UTSW 5 147,312,459 (GRCm39) missense probably benign 0.00
R5395:Flt3 UTSW 5 147,291,633 (GRCm39) missense probably damaging 1.00
R5445:Flt3 UTSW 5 147,291,905 (GRCm39) nonsense probably null
R5469:Flt3 UTSW 5 147,291,893 (GRCm39) missense possibly damaging 0.63
R5556:Flt3 UTSW 5 147,269,807 (GRCm39) splice site probably null
R5660:Flt3 UTSW 5 147,306,291 (GRCm39) missense possibly damaging 0.79
R5879:Flt3 UTSW 5 147,271,719 (GRCm39) missense probably damaging 1.00
R5885:Flt3 UTSW 5 147,286,439 (GRCm39) missense probably damaging 1.00
R6554:Flt3 UTSW 5 147,312,545 (GRCm39) missense probably damaging 0.99
R6813:Flt3 UTSW 5 147,291,653 (GRCm39) missense probably damaging 0.97
R7451:Flt3 UTSW 5 147,286,477 (GRCm39) missense probably damaging 1.00
R7469:Flt3 UTSW 5 147,268,084 (GRCm39) missense probably benign 0.18
R7537:Flt3 UTSW 5 147,271,247 (GRCm39) missense probably damaging 1.00
R7605:Flt3 UTSW 5 147,286,386 (GRCm39) missense probably benign 0.01
R7651:Flt3 UTSW 5 147,291,732 (GRCm39) missense probably damaging 1.00
R8051:Flt3 UTSW 5 147,295,765 (GRCm39) intron probably benign
R8236:Flt3 UTSW 5 147,293,670 (GRCm39) missense probably benign 0.00
R8305:Flt3 UTSW 5 147,284,864 (GRCm39) missense probably damaging 0.96
R8337:Flt3 UTSW 5 147,269,698 (GRCm39) critical splice donor site probably null
R8680:Flt3 UTSW 5 147,320,265 (GRCm39) missense probably benign 0.13
R8682:Flt3 UTSW 5 147,320,265 (GRCm39) missense probably benign 0.13
R8697:Flt3 UTSW 5 147,294,811 (GRCm39) missense possibly damaging 0.94
R8824:Flt3 UTSW 5 147,271,673 (GRCm39) missense probably damaging 1.00
R8959:Flt3 UTSW 5 147,303,774 (GRCm39) missense possibly damaging 0.93
R9235:Flt3 UTSW 5 147,320,202 (GRCm39) missense possibly damaging 0.89
R9324:Flt3 UTSW 5 147,313,790 (GRCm39) missense probably benign 0.27
R9544:Flt3 UTSW 5 147,291,442 (GRCm39) missense possibly damaging 0.76
R9570:Flt3 UTSW 5 147,309,424 (GRCm39) missense possibly damaging 0.91
R9622:Flt3 UTSW 5 147,303,841 (GRCm39) missense possibly damaging 0.92
R9668:Flt3 UTSW 5 147,293,694 (GRCm39) missense probably benign 0.13
X0018:Flt3 UTSW 5 147,303,876 (GRCm39) missense possibly damaging 0.54
Z1088:Flt3 UTSW 5 147,286,374 (GRCm39) critical splice donor site probably null
Z1177:Flt3 UTSW 5 147,320,211 (GRCm39) missense probably benign 0.27
Z31818:Flt3 UTSW 5 147,303,728 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- CTCAGCAATGTCGTAGGAAAGTG -3'
(R):5'- AATTGATTAAGAGGCTTGGGGC -3'

Sequencing Primer
(F):5'- CTCCAGAAGAGGGCATCAGTTTTC -3'
(R):5'- GGCCCTCTGGATCCACTTG -3'
Posted On 2019-12-20