Mutagenetix > Incidental Mutation

Incidental Mutation 'R7846:Srcin1'

606632

Institutional Source

Beutler Lab

Gene Symbol

Srcin1

Ensembl Gene

ENSMUSG00000038453

Gene Name

SRC kinase signaling inhibitor 1

Synonyms

p140Cap, P140

MMRRC Submission

045900-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7846 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

97400166-97466059 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to A at 97416926 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Stop codon at position 913 (E913*)

Ref Sequence

ENSEMBL: ENSMUSP00000103222 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000107590] [ENSMUST00000107593] [ENSMUST00000107596]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000107590
AA Change: E914*

SMART Domains

Protein: ENSMUSP00000103216
Gene: ENSMUSG00000038453
AA Change: E914*

Domain	Start	End	E-Value	Type
low complexity region	26	45	N/A	INTRINSIC
low complexity region	66	75	N/A	INTRINSIC
Blast:THAP	113	142	1e-9	BLAST
low complexity region	332	366	N/A	INTRINSIC
low complexity region	489	501	N/A	INTRINSIC
low complexity region	516	538	N/A	INTRINSIC
low complexity region	558	575	N/A	INTRINSIC
low complexity region	655	679	N/A	INTRINSIC
low complexity region	699	712	N/A	INTRINSIC
coiled coil region	751	784	N/A	INTRINSIC
low complexity region	1034	1051	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000107593
AA Change: E914*

SMART Domains

Protein: ENSMUSP00000103219
Gene: ENSMUSG00000038453
AA Change: E914*

Domain	Start	End	E-Value	Type
low complexity region	26	45	N/A	INTRINSIC
low complexity region	66	75	N/A	INTRINSIC
Blast:THAP	113	142	1e-9	BLAST
low complexity region	332	366	N/A	INTRINSIC
low complexity region	489	501	N/A	INTRINSIC
low complexity region	516	538	N/A	INTRINSIC
low complexity region	558	575	N/A	INTRINSIC
low complexity region	655	679	N/A	INTRINSIC
low complexity region	699	712	N/A	INTRINSIC
coiled coil region	751	784	N/A	INTRINSIC
low complexity region	1034	1051	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000107596
AA Change: E913*

SMART Domains

Protein: ENSMUSP00000103222
Gene: ENSMUSG00000038453
AA Change: E913*

Domain	Start	End	E-Value	Type
low complexity region	32	41	N/A	INTRINSIC
Blast:THAP	79	108	8e-10	BLAST
low complexity region	118	128	N/A	INTRINSIC
Pfam:AIP3	218	330	2e-11	PFAM
low complexity region	331	365	N/A	INTRINSIC
low complexity region	488	500	N/A	INTRINSIC
low complexity region	515	537	N/A	INTRINSIC
low complexity region	557	574	N/A	INTRINSIC
low complexity region	654	678	N/A	INTRINSIC
low complexity region	698	711	N/A	INTRINSIC
coiled coil region	750	783	N/A	INTRINSIC
low complexity region	1033	1050	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele display abnormalities in object recognition memory and motor learning, dendritic spine disorganization, impaired synaptic plasticity, and reduced long term potentiation and long term depression. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abraxas1	A	G	5: 100,954,698 (GRCm39)	V247A	probably damaging	Het
Acot13	G	T	13: 25,002,133 (GRCm39)	T103K	probably damaging	Het
Acsl6	A	T	11: 54,251,901 (GRCm39)	I683F	probably damaging	Het
Acss2	A	T	2: 155,402,953 (GRCm39)	H577L	probably damaging	Het
Ahctf1	A	T	1: 179,614,638 (GRCm39)	V382D	probably damaging	Het
Aldob	T	C	4: 49,538,858 (GRCm39)	H220R	probably damaging	Het
Ankrd1	C	T	19: 36,094,218 (GRCm39)	V169M	probably damaging	Het
Atp5f1a	G	A	18: 77,869,015 (GRCm39)	R413H	possibly damaging	Het
Cep76	A	G	18: 67,762,975 (GRCm39)	F283L	probably damaging	Het
Chrna5	A	T	9: 54,912,391 (GRCm39)	D397V	probably benign	Het
Coro7	T	C	16: 4,488,400 (GRCm39)	D90G	probably damaging	Het
Csnk1g3	A	G	18: 54,081,177 (GRCm39)	N383D	probably benign	Het
Cwf19l2	C	A	9: 3,477,889 (GRCm39)	Q865K	probably damaging	Het
Cyth2	C	A	7: 45,460,378 (GRCm39)	W149C	probably damaging	Het
Dgkh	C	A	14: 78,856,026 (GRCm39)	R349L	probably damaging	Het
Dnajc1	G	T	2: 18,224,704 (GRCm39)	T383N	possibly damaging	Het
Efcab3	T	A	11: 104,605,571 (GRCm39)		probably null	Het
Extl3	A	T	14: 65,313,181 (GRCm39)	M667K	probably damaging	Het
Fam149a	G	T	8: 45,811,678 (GRCm39)	A75E		Het
Fgd4	T	G	16: 16,240,590 (GRCm39)	Q713P	probably damaging	Het
Frat2	T	A	19: 41,836,215 (GRCm39)	I46F	probably damaging	Het
Gzmc	A	G	14: 56,469,017 (GRCm39)	V234A	probably damaging	Het
H2-Q4	A	G	17: 35,599,134 (GRCm39)	N135D	probably damaging	Het
Ighv1-85	A	T	12: 115,963,937 (GRCm39)	V21D	possibly damaging	Het
Itprid1	A	G	6: 55,955,320 (GRCm39)	Q976R	possibly damaging	Het
Kcna6	A	T	6: 126,715,983 (GRCm39)	V302E	probably damaging	Het
Kdm3b	G	T	18: 34,942,293 (GRCm39)	V795L	possibly damaging	Het
Kdm5b	G	A	1: 134,545,578 (GRCm39)	R913H	probably damaging	Het
Lpp	T	A	16: 24,426,876 (GRCm39)	M1K	probably null	Het
Med12l	T	C	3: 59,172,355 (GRCm39)	S1704P	probably damaging	Het
Mfsd10	G	T	5: 34,793,456 (GRCm39)	S95*	probably null	Het
Napepld	C	T	5: 21,880,721 (GRCm39)	E225K	probably benign	Het
Ndfip2	T	C	14: 105,535,448 (GRCm39)	F245L	probably damaging	Het
Oaf	G	A	9: 43,134,077 (GRCm39)	R215C	probably damaging	Het
Or10k2	A	G	8: 84,268,526 (GRCm39)	H251R	probably damaging	Het
Or13a20	C	T	7: 140,232,374 (GRCm39)	H161Y	probably damaging	Het
Or51i1	A	G	7: 103,670,736 (GRCm39)	I263T	possibly damaging	Het
Or52z15	A	G	7: 103,332,407 (GRCm39)	I161V	probably benign	Het
Or5p6	A	G	7: 107,631,199 (GRCm39)	I117T	probably benign	Het
Or8b47	A	G	9: 38,435,675 (GRCm39)	T216A	probably benign	Het
Pcdhgb2	A	T	18: 37,825,273 (GRCm39)	I755F	possibly damaging	Het
Pde4dip	A	G	3: 97,622,490 (GRCm39)	L1573P	probably damaging	Het
Peg3	A	T	7: 6,713,650 (GRCm39)	V524E	probably damaging	Het
Phc1	G	T	6: 122,310,329 (GRCm39)	T126N	probably damaging	Het
Phf1	C	A	17: 27,154,291 (GRCm39)	Y169*	probably null	Het
Pramel25	A	T	4: 143,520,563 (GRCm39)	D269V	probably benign	Het
Prl3a1	G	A	13: 27,456,442 (GRCm39)	E99K	probably damaging	Het
Prss57	G	A	10: 79,623,213 (GRCm39)	A78V	probably damaging	Het
Ptprb	A	T	10: 116,119,453 (GRCm39)	T196S	probably benign	Het
Rgsl1	A	T	1: 153,701,783 (GRCm39)	C224S	possibly damaging	Het
Rtn4	T	C	11: 29,643,274 (GRCm39)	V29A	unknown	Het
Selplg	G	A	5: 113,957,481 (GRCm39)	T275M	probably damaging	Het
Skint11	C	T	4: 114,102,076 (GRCm39)	T363I	possibly damaging	Het
Slc22a29	T	A	19: 8,170,851 (GRCm39)	I289F	probably benign	Het
Slc26a2	A	G	18: 61,331,776 (GRCm39)	S552P	probably benign	Het
Sptb	T	A	12: 76,655,300 (GRCm39)	K1480*	probably null	Het
Sptbn1	C	A	11: 30,092,153 (GRCm39)	M537I	probably damaging	Het
Sqor	A	T	2: 122,627,008 (GRCm39)	H43L	probably benign	Het
Srgap1	A	G	10: 121,621,397 (GRCm39)	L1032P	probably damaging	Het
Stc2	T	C	11: 31,315,413 (GRCm39)	K142R	probably benign	Het
Stox1	A	C	10: 62,495,305 (GRCm39)	N989K	probably damaging	Het
Tert	T	A	13: 73,776,314 (GRCm39)	L355H	probably damaging	Het
Tfb2m	A	G	1: 179,358,926 (GRCm39)	F319S	probably damaging	Het
Trps1	A	G	15: 50,695,273 (GRCm39)	F341L	probably damaging	Het
Ttk	T	C	9: 83,725,732 (GRCm39)	V218A	probably benign	Het
Vmn1r159	A	G	7: 22,542,696 (GRCm39)	I112T	probably benign	Het
Vps8	C	A	16: 21,351,070 (GRCm39)	Q916K	probably benign	Het
Wdr12	A	T	1: 60,121,225 (GRCm39)	D364E	probably damaging	Het
Ylpm1	A	G	12: 85,104,042 (GRCm39)	E2019G	probably damaging	Het
Zfp267	C	A	3: 36,219,738 (GRCm39)	T587N	probably benign	Het
Zfp507	A	G	7: 35,493,963 (GRCm39)	L360P	probably damaging	Het

Other mutations in Srcin1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01874:Srcin1	APN	11	97,423,924 (GRCm39)	missense	possibly damaging	0.81
IGL03347:Srcin1	APN	11	97,416,170 (GRCm39)	missense	probably damaging	1.00
R1619:Srcin1	UTSW	11	97,416,307 (GRCm39)	missense	probably damaging	1.00
R1678:Srcin1	UTSW	11	97,409,470 (GRCm39)	missense	probably damaging	0.99
R1733:Srcin1	UTSW	11	97,424,327 (GRCm39)	missense	probably benign
R2023:Srcin1	UTSW	11	97,416,872 (GRCm39)	missense	probably benign
R2238:Srcin1	UTSW	11	97,425,645 (GRCm39)	missense	probably benign	0.00
R3983:Srcin1	UTSW	11	97,416,379 (GRCm39)	missense	probably damaging	1.00
R4572:Srcin1	UTSW	11	97,425,760 (GRCm39)	missense	probably damaging	1.00
R4628:Srcin1	UTSW	11	97,439,752 (GRCm39)	missense	probably benign	0.12
R4946:Srcin1	UTSW	11	97,442,768 (GRCm39)	missense	probably damaging	1.00
R5175:Srcin1	UTSW	11	97,464,703 (GRCm39)	missense	probably damaging	0.99
R5424:Srcin1	UTSW	11	97,427,885 (GRCm39)	nonsense	probably null
R5705:Srcin1	UTSW	11	97,439,777 (GRCm39)	missense	probably benign	0.42
R5918:Srcin1	UTSW	11	97,424,323 (GRCm39)	splice site	probably null
R6563:Srcin1	UTSW	11	97,425,600 (GRCm39)	missense	possibly damaging	0.74
R6613:Srcin1	UTSW	11	97,424,653 (GRCm39)	missense	possibly damaging	0.94
R6756:Srcin1	UTSW	11	97,425,836 (GRCm39)	missense	probably damaging	1.00
R6805:Srcin1	UTSW	11	97,442,806 (GRCm39)	critical splice acceptor site	probably null
R7060:Srcin1	UTSW	11	97,464,711 (GRCm39)	missense	probably damaging	0.99
R7271:Srcin1	UTSW	11	97,442,715 (GRCm39)	missense	probably damaging	0.99
R7304:Srcin1	UTSW	11	97,442,519 (GRCm39)	missense	probably benign	0.01
R7469:Srcin1	UTSW	11	97,425,435 (GRCm39)	missense	probably damaging	0.98
R7567:Srcin1	UTSW	11	97,425,551 (GRCm39)	missense	probably damaging	1.00
R7994:Srcin1	UTSW	11	97,422,742 (GRCm39)	missense	probably damaging	1.00
R8203:Srcin1	UTSW	11	97,457,539 (GRCm39)	missense	probably damaging	1.00
R8377:Srcin1	UTSW	11	97,442,804 (GRCm39)	missense	probably damaging	0.99
R8488:Srcin1	UTSW	11	97,416,686 (GRCm39)	splice site	probably null
R8559:Srcin1	UTSW	11	97,427,975 (GRCm39)	missense	probably damaging	1.00
R8690:Srcin1	UTSW	11	97,414,368 (GRCm39)	missense	probably damaging	1.00
R8794:Srcin1	UTSW	11	97,439,803 (GRCm39)	missense	probably benign	0.00
R8982:Srcin1	UTSW	11	97,426,624 (GRCm39)	missense	probably damaging	1.00
R9061:Srcin1	UTSW	11	97,427,206 (GRCm39)	missense	probably damaging	1.00
R9253:Srcin1	UTSW	11	97,416,377 (GRCm39)	missense	probably damaging	1.00
R9632:Srcin1	UTSW	11	97,442,648 (GRCm39)	missense	probably benign	0.11
X0024:Srcin1	UTSW	11	97,427,294 (GRCm39)	missense	probably damaging	1.00
Z1176:Srcin1	UTSW	11	97,409,553 (GRCm39)	missense	possibly damaging	0.88
Z1177:Srcin1	UTSW	11	97,417,687 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CTAAGGAAAAGAGCCCACGTGC -3'
(R):5'- ATGCCTGCAGGTTCAGTTCC -3'

Sequencing Primer
(F):5'- AAGAGCCCACGTGCTCCTTC -3'
(R):5'- GGGCTACCACTGCTCACTAG -3'

Posted On

2019-12-20