Incidental Mutation 'R7847:Specc1l'
| ID |
606693 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Specc1l
|
| Ensembl Gene |
ENSMUSG00000033444 |
| Gene Name |
sperm antigen with calponin homology and coiled-coil domains 1-like |
| Synonyms |
Cytsa, Specc1l |
| MMRRC Submission |
045901-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.434)
|
| Stock # |
R7847 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
10 |
| Chromosomal Location |
75212073-75312743 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 75309836 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 1105
(V1105A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151322
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000040105]
[ENSMUST00000105421]
[ENSMUST00000218766]
|
| AlphaFold |
Q2KN98 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000040105
AA Change: V1122A
PolyPhen 2
Score 0.688 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000045099
Gene: ENSMUSG00000033444
AA Change: V1122A
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
97 |
107 |
N/A |
INTRINSIC |
|
low complexity region
|
135 |
149 |
N/A |
INTRINSIC |
|
coiled coil region
|
255 |
298 |
N/A |
INTRINSIC |
|
low complexity region
|
376 |
390 |
N/A |
INTRINSIC |
|
coiled coil region
|
412 |
467 |
N/A |
INTRINSIC |
|
coiled coil region
|
505 |
825 |
N/A |
INTRINSIC |
|
low complexity region
|
846 |
858 |
N/A |
INTRINSIC |
|
low complexity region
|
989 |
1010 |
N/A |
INTRINSIC |
|
CH
|
1031 |
1129 |
1.52e-15 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000105421
AA Change: V1122A
PolyPhen 2
Score 0.688 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000101061
Gene: ENSMUSG00000033444
AA Change: V1122A
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
80 |
90 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
132 |
N/A |
INTRINSIC |
|
coiled coil region
|
238 |
281 |
N/A |
INTRINSIC |
|
low complexity region
|
359 |
373 |
N/A |
INTRINSIC |
|
coiled coil region
|
395 |
450 |
N/A |
INTRINSIC |
|
coiled coil region
|
488 |
808 |
N/A |
INTRINSIC |
|
low complexity region
|
829 |
841 |
N/A |
INTRINSIC |
|
low complexity region
|
972 |
993 |
N/A |
INTRINSIC |
|
CH
|
1014 |
1112 |
1.52e-15 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000218766
AA Change: V1105A
PolyPhen 2
Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)
|
| Meta Mutation Damage Score |
0.3125 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.8%
- 20x: 99.2%
|
| Validation Efficiency |
100% (45/45) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a coiled-coil domain containing protein. The encoded protein may play a critical role in actin-cytoskeletal reorganization during facial morphogenesis. Mutations in this gene are a cause of oblique facial clefting-1. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. A read-through transcript composed of SPECC1L (sperm antigen with calponin homology and coiled-coil domains 1-like) and the downstream ADORA2A (adenosine A2a receptor) gene sequence has been identified, but it is thought to be non-coding. [provided by RefSeq, Jun 2013]
PHENOTYPE: Homozygous knockout affects cranial neural crest cell migration, which causes neural tube closure defects and leads to embryonic lethality. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 47 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2300002M23Rik |
T |
A |
17: 35,568,652 (GRCm38) |
Y296N |
probably benign |
Het |
| Abcc4 |
T |
C |
14: 118,627,480 (GRCm38) |
E378G |
probably damaging |
Het |
| Acp2 |
C |
T |
2: 91,210,732 (GRCm38) |
H422Y |
possibly damaging |
Het |
| Aldoart1 |
C |
T |
4: 72,851,956 (GRCm38) |
C205Y |
probably damaging |
Het |
| Alg9 |
T |
C |
9: 50,789,605 (GRCm38) |
L225S |
possibly damaging |
Het |
| Anapc1 |
A |
C |
2: 128,669,908 (GRCm38) |
V455G |
possibly damaging |
Het |
| Arhgef5 |
C |
A |
6: 43,275,135 (GRCm38) |
S940* |
probably null |
Het |
| Asb15 |
C |
A |
6: 24,564,267 (GRCm38) |
A240E |
probably damaging |
Het |
| BB014433 |
GCACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTACACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTGCACACAGCTTTGG |
GCACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTGCACACAGCTTTGG |
8: 15,042,160 (GRCm38) |
|
probably benign |
Het |
| Ccdc17 |
A |
G |
4: 116,599,906 (GRCm38) |
E529G |
probably benign |
Het |
| Cyp2b10 |
T |
C |
7: 25,897,760 (GRCm38) |
S26P |
possibly damaging |
Het |
| Dcp1b |
T |
C |
6: 119,215,295 (GRCm38) |
S391P |
probably benign |
Het |
| Dock6 |
A |
T |
9: 21,801,207 (GRCm38) |
L2086Q |
unknown |
Het |
| Ephx1 |
A |
G |
1: 181,001,861 (GRCm38) |
S41P |
probably benign |
Het |
| Erbb3 |
G |
A |
10: 128,571,189 (GRCm38) |
T1034M |
probably damaging |
Het |
| Gm17334 |
T |
A |
11: 53,772,738 (GRCm38) |
|
probably benign |
Het |
| Golgb1 |
A |
G |
16: 36,931,920 (GRCm38) |
H3227R |
probably damaging |
Het |
| Grin2c |
G |
A |
11: 115,260,978 (GRCm38) |
P52L |
possibly damaging |
Het |
| Herc2 |
T |
C |
7: 56,157,560 (GRCm38) |
|
probably null |
Het |
| Il17rb |
A |
G |
14: 29,996,806 (GRCm38) |
Y440H |
probably damaging |
Het |
| Kcng4 |
A |
G |
8: 119,626,142 (GRCm38) |
L343P |
probably damaging |
Het |
| Knl1 |
G |
A |
2: 119,070,976 (GRCm38) |
E1053K |
probably benign |
Het |
| Lipo4 |
A |
T |
19: 33,514,199 (GRCm38) |
V128E |
possibly damaging |
Het |
| Lmntd2 |
T |
C |
7: 141,210,150 (GRCm38) |
N650D |
probably benign |
Het |
| Lrrfip2 |
T |
C |
9: 111,213,880 (GRCm38) |
L460P |
probably damaging |
Het |
| Man2a2 |
G |
C |
7: 80,368,865 (GRCm38) |
A82G |
probably benign |
Het |
| Mtcl1 |
T |
C |
17: 66,344,333 (GRCm38) |
Q1379R |
probably damaging |
Het |
| Mtfr2 |
G |
A |
10: 20,357,452 (GRCm38) |
A256T |
probably benign |
Het |
| Mup17 |
T |
A |
4: 61,593,219 (GRCm38) |
H159L |
probably benign |
Het |
| Ndufaf1 |
A |
T |
2: 119,660,053 (GRCm38) |
D175E |
probably damaging |
Het |
| Nup210l |
A |
G |
3: 90,151,123 (GRCm38) |
M610V |
probably benign |
Het |
| Olfr1338 |
G |
T |
4: 118,754,368 (GRCm38) |
H59N |
possibly damaging |
Het |
| Olfr1354 |
T |
A |
10: 78,916,896 (GRCm38) |
S19T |
probably benign |
Het |
| Olfr955 |
A |
G |
9: 39,470,505 (GRCm38) |
S74P |
probably benign |
Het |
| Pard3b |
A |
G |
1: 62,343,934 (GRCm38) |
D729G |
probably benign |
Het |
| Phactr1 |
T |
C |
13: 43,057,188 (GRCm38) |
L169P |
possibly damaging |
Het |
| Rad54b |
T |
A |
4: 11,612,655 (GRCm38) |
S762R |
probably damaging |
Het |
| Senp5 |
C |
T |
16: 31,990,173 (GRCm38) |
V88I |
probably benign |
Het |
| Trak2 |
A |
C |
1: 58,935,818 (GRCm38) |
S72A |
possibly damaging |
Het |
| Ttyh2 |
T |
C |
11: 114,675,674 (GRCm38) |
|
probably null |
Het |
| Ush2a |
G |
A |
1: 188,430,808 (GRCm38) |
C1029Y |
probably damaging |
Het |
| Vmn2r17 |
A |
G |
5: 109,420,197 (GRCm38) |
Y62C |
probably damaging |
Het |
| Vmn2r41 |
A |
G |
7: 8,161,548 (GRCm38) |
F2L |
probably benign |
Het |
| Xirp1 |
G |
T |
9: 120,019,753 (GRCm38) |
D21E |
possibly damaging |
Het |
| Zfp114 |
C |
A |
7: 24,181,035 (GRCm38) |
Q270K |
possibly damaging |
Het |
| Zfp341 |
T |
C |
2: 154,634,194 (GRCm38) |
S441P |
probably damaging |
Het |
| Zfp780b |
A |
C |
7: 27,964,418 (GRCm38) |
H237Q |
probably benign |
Het |
|
| Other mutations in Specc1l |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00549:Specc1l
|
APN |
10 |
75,246,221 (GRCm38) |
missense |
probably benign |
0.12 |
|
IGL01638:Specc1l
|
APN |
10 |
75,246,205 (GRCm38) |
nonsense |
probably null |
|
|
IGL01970:Specc1l
|
APN |
10 |
75,245,761 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02539:Specc1l
|
APN |
10 |
75,267,508 (GRCm38) |
missense |
probably benign |
0.39 |
|
IGL02737:Specc1l
|
APN |
10 |
75,246,324 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL02941:Specc1l
|
APN |
10 |
75,241,188 (GRCm38) |
missense |
probably benign |
0.10 |
|
R0305:Specc1l
|
UTSW |
10 |
75,245,829 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0374:Specc1l
|
UTSW |
10 |
75,248,459 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R0402:Specc1l
|
UTSW |
10 |
75,246,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1456:Specc1l
|
UTSW |
10 |
75,246,284 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R1508:Specc1l
|
UTSW |
10 |
75,307,238 (GRCm38) |
missense |
probably benign |
0.00 |
|
R1861:Specc1l
|
UTSW |
10 |
75,309,859 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1869:Specc1l
|
UTSW |
10 |
75,261,825 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1929:Specc1l
|
UTSW |
10 |
75,245,604 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1930:Specc1l
|
UTSW |
10 |
75,309,824 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2021:Specc1l
|
UTSW |
10 |
75,267,591 (GRCm38) |
critical splice donor site |
probably null |
|
|
R2209:Specc1l
|
UTSW |
10 |
75,246,576 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2271:Specc1l
|
UTSW |
10 |
75,245,604 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2937:Specc1l
|
UTSW |
10 |
75,259,131 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R4415:Specc1l
|
UTSW |
10 |
75,246,328 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R4758:Specc1l
|
UTSW |
10 |
75,246,348 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R5344:Specc1l
|
UTSW |
10 |
75,246,173 (GRCm38) |
missense |
possibly damaging |
0.84 |
|
R5383:Specc1l
|
UTSW |
10 |
75,246,705 (GRCm38) |
missense |
possibly damaging |
0.86 |
|
R5426:Specc1l
|
UTSW |
10 |
75,267,550 (GRCm38) |
missense |
probably benign |
0.21 |
|
R5774:Specc1l
|
UTSW |
10 |
75,245,400 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5788:Specc1l
|
UTSW |
10 |
75,276,921 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6101:Specc1l
|
UTSW |
10 |
75,248,632 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6105:Specc1l
|
UTSW |
10 |
75,248,632 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6136:Specc1l
|
UTSW |
10 |
75,246,660 (GRCm38) |
missense |
probably benign |
0.38 |
|
R6345:Specc1l
|
UTSW |
10 |
75,248,488 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R6459:Specc1l
|
UTSW |
10 |
75,246,167 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6641:Specc1l
|
UTSW |
10 |
75,246,549 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6996:Specc1l
|
UTSW |
10 |
75,246,279 (GRCm38) |
missense |
probably benign |
0.23 |
|
R7100:Specc1l
|
UTSW |
10 |
75,245,495 (GRCm38) |
missense |
probably benign |
0.21 |
|
R7475:Specc1l
|
UTSW |
10 |
75,246,447 (GRCm38) |
missense |
possibly damaging |
0.59 |
|
R7545:Specc1l
|
UTSW |
10 |
75,245,087 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7615:Specc1l
|
UTSW |
10 |
75,263,286 (GRCm38) |
missense |
probably benign |
0.02 |
|
R7635:Specc1l
|
UTSW |
10 |
75,276,804 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7640:Specc1l
|
UTSW |
10 |
75,257,869 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7682:Specc1l
|
UTSW |
10 |
75,245,802 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R7711:Specc1l
|
UTSW |
10 |
75,230,808 (GRCm38) |
missense |
probably benign |
0.02 |
|
R7742:Specc1l
|
UTSW |
10 |
75,246,417 (GRCm38) |
missense |
probably benign |
0.01 |
|
R8015:Specc1l
|
UTSW |
10 |
75,241,068 (GRCm38) |
missense |
probably benign |
0.17 |
|
R8030:Specc1l
|
UTSW |
10 |
75,248,555 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8882:Specc1l
|
UTSW |
10 |
75,229,855 (GRCm38) |
start codon destroyed |
unknown |
|
|
R9069:Specc1l
|
UTSW |
10 |
75,230,806 (GRCm38) |
missense |
probably benign |
0.03 |
|
R9790:Specc1l
|
UTSW |
10 |
75,230,769 (GRCm38) |
missense |
probably benign |
0.21 |
|
R9791:Specc1l
|
UTSW |
10 |
75,230,769 (GRCm38) |
missense |
probably benign |
0.21 |
|
X0021:Specc1l
|
UTSW |
10 |
75,274,040 (GRCm38) |
missense |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- ATGCTCACAGGGACCTTTGG -3'
(R):5'- TCCAGTTCCAATGCAGAGG -3'
Sequencing Primer
(F):5'- AGCAGATACTGGAGACCTGTCCTC -3'
(R):5'- CAGTTCCAATGCAGAGGCCTAG -3'
|
| Posted On |
2019-12-20 |
Incidental Mutation