Mutagenetix > Incidental Mutation

Incidental Mutation 'R7855:Coro1c'

607176

Institutional Source

Beutler Lab

Gene Symbol

Coro1c

Ensembl Gene

ENSMUSG00000004530

Gene Name

coronin, actin binding protein 1C

Synonyms

coronin 3, CRN2

MMRRC Submission

045908-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7855 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

113980500-114046767 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 113986658 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 262 (M262K)

Ref Sequence

ENSEMBL: ENSMUSP00000004646 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004646] [ENSMUST00000164980]

AlphaFold

Q9WUM4

Predicted Effect

probably benign
Transcript: ENSMUST00000004646
AA Change: M262K

PolyPhen 2 Score 0.207 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000004646
Gene: ENSMUSG00000004530
AA Change: M262K

Domain	Start	End	E-Value	Type
DUF1899	3	67	2.53e-36	SMART
WD40	66	109	3.99e-8	SMART
WD40	119	159	1.09e-5	SMART
WD40	162	202	3.09e-5	SMART
DUF1900	256	390	4.5e-92	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000164980

SMART Domains

Protein: ENSMUSP00000129314
Gene: ENSMUSG00000004530

Domain	Start	End	E-Value	Type
DUF1899	3	67	2.53e-36	SMART
WD40	66	109	3.99e-8	SMART
Pfam:WD40	120	149	8e-4	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Feb 2013]

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	A	T	11: 110,082,454 (GRCm39)	V1173D	probably benign	Het
Ace	A	T	11: 105,863,205 (GRCm39)	M327L	probably benign	Het
Bcl2l2	C	T	14: 55,121,836 (GRCm39)		probably benign	Het
Bicdl2	C	T	17: 23,884,991 (GRCm39)	Q231*	probably null	Het
Brms1l	A	T	12: 55,912,838 (GRCm39)	D277V	possibly damaging	Het
Cd38	C	A	5: 44,058,790 (GRCm39)	L135M	probably damaging	Het
Col6a3	G	T	1: 90,738,343 (GRCm39)	P1059T	possibly damaging	Het
Cpxm2	G	T	7: 131,659,424 (GRCm39)	P481Q	possibly damaging	Het
Dipk1c	G	A	18: 84,748,171 (GRCm39)		probably benign	Het
Dnah12	G	T	14: 26,551,286 (GRCm39)	V2543F	probably benign	Het
Dock2	A	C	11: 34,223,698 (GRCm39)	D1145E	probably damaging	Het
Elf3	G	A	1: 135,182,090 (GRCm39)	R364W	probably damaging	Het
Eln	AGGGACACCAGCACCAGCCCCAAATCCGGGGACACCAGCACCAGCCCCAAATCCGGGGACACCAGCACCAGCCCCAAATCCGGGGACACCAGCACCAGCCCCAAATCCAGGGACACCAGC	AGGGACACCAGCACCAGCCCCAAATCCGGGGACACCAGCACCAGCCCCAAATCCGGGGACACCAGCACCAGCCCCAAATCCAGGGACACCAGC	5: 134,739,935 (GRCm39)		probably benign	Het
Epha3	A	G	16: 63,593,923 (GRCm39)	I55T	probably damaging	Het
Gfer	C	A	17: 24,913,259 (GRCm39)	D198Y	probably damaging	Het
Gm11568	A	T	11: 99,749,010 (GRCm39)	T72S	unknown	Het
Igkv3-1	C	T	6: 70,681,053 (GRCm39)	A84V	probably benign	Het
Il1rl2	A	C	1: 40,382,279 (GRCm39)	Y197S	probably damaging	Het
Il2ra	T	C	2: 11,685,147 (GRCm39)	I161T	possibly damaging	Het
Itgb8	C	T	12: 119,130,507 (GRCm39)	R667H	probably benign	Het
Kcnh7	G	A	2: 62,667,538 (GRCm39)	Q334*	probably null	Het
Lctl	A	C	9: 64,040,498 (GRCm39)	R480S	possibly damaging	Het
Lrba	T	G	3: 86,222,737 (GRCm39)	I617S	possibly damaging	Het
Marf1	G	T	16: 13,932,065 (GRCm39)	H1651N	probably benign	Het
Mitf	T	A	6: 97,970,157 (GRCm39)	Y142N	probably damaging	Het
Or51v14	T	A	7: 103,260,979 (GRCm39)	I194F	possibly damaging	Het
Or52r1	A	G	7: 102,536,835 (GRCm39)	V175A	probably benign	Het
Pecam1	A	G	11: 106,562,576 (GRCm39)	V708A	probably benign	Het
Pinlyp	C	T	7: 24,241,865 (GRCm39)		probably null	Het
Polh	G	A	17: 46,486,174 (GRCm39)	R382W	probably damaging	Het
Pramel51	A	T	12: 88,142,853 (GRCm39)	I450N	probably benign	Het
Prdm10	A	G	9: 31,238,770 (GRCm39)	I221V	probably benign	Het
Pskh1	G	T	8: 106,639,722 (GRCm39)	R134L	probably benign	Het
Ptpre	A	G	7: 135,253,724 (GRCm39)	N6D	probably benign	Het
Rasgrp4	C	T	7: 28,850,035 (GRCm39)	P58L	unknown	Het
Rhbdf2	G	T	11: 116,493,066 (GRCm39)	C393*	probably null	Het
Rlf	T	C	4: 121,039,888 (GRCm39)	I174M	possibly damaging	Het
Ryr2	T	A	13: 11,721,509 (GRCm39)	R2641*	probably null	Het
Semp2l1	A	C	1: 32,585,114 (GRCm39)	I265M	probably damaging	Het
Simc1	A	G	13: 54,672,645 (GRCm39)	H331R	probably benign	Het
Skp2	A	G	15: 9,122,328 (GRCm39)	S256P	probably benign	Het
Smarcd2	T	C	11: 106,158,392 (GRCm39)	R10G	probably benign	Het
Spef2	A	G	15: 9,687,981 (GRCm39)	L480P	possibly damaging	Het
Tenm4	A	G	7: 96,523,081 (GRCm39)	H1541R	probably damaging	Het
Top1	T	A	2: 160,556,008 (GRCm39)	L489Q	probably damaging	Het
Ttll13	C	T	7: 79,903,845 (GRCm39)	H258Y	probably damaging	Het
Unc80	A	G	1: 66,522,508 (GRCm39)	R237G	possibly damaging	Het
Vmn1r55	A	G	7: 5,149,623 (GRCm39)	F267L	probably benign	Het
Vmn2r96	T	A	17: 18,818,130 (GRCm39)	M761K	possibly damaging	Het
Vps33a	G	A	5: 123,709,042 (GRCm39)	H58Y	possibly damaging	Het
Zfp1002	C	T	2: 150,097,066 (GRCm39)	R121Q	probably benign	Het
Zfp354c	TCACACTCGGCACA	TCACA	11: 50,706,067 (GRCm39)		probably benign	Het
Zfp467	T	C	6: 48,416,115 (GRCm39)	Q179R	probably damaging	Het
Zfp729a	A	T	13: 67,768,067 (GRCm39)	S721T	possibly damaging	Het
Zfta	T	A	19: 7,399,621 (GRCm39)	I456N	probably damaging	Het

Other mutations in Coro1c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01102:Coro1c	APN	5	113,987,675 (GRCm39)	missense	probably benign	0.07
IGL01138:Coro1c	APN	5	113,990,222 (GRCm39)	splice site	probably benign
IGL01474:Coro1c	APN	5	114,020,216 (GRCm39)	splice site	probably benign
IGL02075:Coro1c	APN	5	113,982,454 (GRCm39)	missense	probably damaging	1.00
IGL02106:Coro1c	APN	5	113,990,334 (GRCm39)	missense	probably benign	0.01
IGL02831:Coro1c	APN	5	113,982,469 (GRCm39)	missense	probably benign
R0254:Coro1c	UTSW	5	113,983,313 (GRCm39)	missense	probably benign	0.09
R0975:Coro1c	UTSW	5	114,020,182 (GRCm39)	missense	probably damaging	1.00
R1835:Coro1c	UTSW	5	113,986,604 (GRCm39)	missense	probably benign	0.10
R2944:Coro1c	UTSW	5	113,988,861 (GRCm39)	missense	probably damaging	1.00
R5210:Coro1c	UTSW	5	113,983,367 (GRCm39)	missense	probably damaging	1.00
R5354:Coro1c	UTSW	5	113,984,226 (GRCm39)	missense	possibly damaging	0.94
R5379:Coro1c	UTSW	5	113,983,443 (GRCm39)	missense	probably damaging	1.00
R5414:Coro1c	UTSW	5	113,986,607 (GRCm39)	missense	possibly damaging	0.55
R5869:Coro1c	UTSW	5	113,988,907 (GRCm39)	intron	probably benign
R5891:Coro1c	UTSW	5	113,988,872 (GRCm39)	missense	probably damaging	0.98
R7037:Coro1c	UTSW	5	113,983,457 (GRCm39)	missense	possibly damaging	0.60
R7116:Coro1c	UTSW	5	113,990,267 (GRCm39)	nonsense	probably null
R7536:Coro1c	UTSW	5	113,983,350 (GRCm39)	missense	probably damaging	1.00
R8043:Coro1c	UTSW	5	114,003,820 (GRCm39)	splice site	silent
R8078:Coro1c	UTSW	5	114,020,164 (GRCm39)	missense	probably damaging	0.98
R8175:Coro1c	UTSW	5	113,988,876 (GRCm39)	missense	probably benign	0.04
R8267:Coro1c	UTSW	5	113,985,636 (GRCm39)	missense	probably damaging	1.00
R8560:Coro1c	UTSW	5	113,984,249 (GRCm39)	missense	probably damaging	1.00
R9012:Coro1c	UTSW	5	113,988,737 (GRCm39)	missense	probably damaging	0.99
R9229:Coro1c	UTSW	5	114,003,747 (GRCm39)	missense	probably damaging	1.00
R9355:Coro1c	UTSW	5	114,003,726 (GRCm39)	missense	probably damaging	1.00
R9496:Coro1c	UTSW	5	113,983,337 (GRCm39)	missense	probably benign	0.13
R9502:Coro1c	UTSW	5	113,988,781 (GRCm39)	missense	probably damaging	0.99
R9570:Coro1c	UTSW	5	114,003,816 (GRCm39)	nonsense	probably null
X0018:Coro1c	UTSW	5	113,986,655 (GRCm39)	missense	probably benign	0.13
Z1088:Coro1c	UTSW	5	113,988,710 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CAAGCTTTCAGCATGAACGTGC -3'
(R):5'- GTTTGCATGCATGAGGTCACC -3'

Sequencing Primer
(F):5'- GCATGAACGTGCTCTTACAC -3'
(R):5'- GAGGTCACCTGTATTTACATGCACG -3'

Posted On

2019-12-20