Mutagenetix > Incidental Mutations

Incidental Mutation 'R7862:Fmnl1'

607591

Institutional Source

Beutler Lab

Gene Symbol

Fmnl1

Ensembl Gene

ENSMUSG00000055805

Gene Name

formin-like 1

Synonyms

formin-related gene in leukocytes, 8030453N10Rik

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.127) question?

Stock #

R7862 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

103171107-103198901 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 103180930 bp

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 88 (K88E)

Ref Sequence

ENSEMBL: ENSMUSP00000046296 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042286] [ENSMUST00000107027] [ENSMUST00000218163]

Predicted Effect

probably damaging
Transcript: ENSMUST00000042286
AA Change: K88E

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000046296
Gene: ENSMUSG00000055805
AA Change: K88E

Domain	Start	End	E-Value	Type
Drf_GBD	27	280	1.04e-87	SMART
Drf_FH3	283	632	2.29e-75	SMART
FH2	627	1057	4.35e-142	SMART
low complexity region	1074	1087	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000107027
AA Change: K88E

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000102642
Gene: ENSMUSG00000055805
AA Change: K88E

Domain	Start	End	E-Value	Type
Drf_GBD	27	280	1.04e-87	SMART
Drf_FH3	283	632	2.29e-75	SMART
FH2	627	1057	4.35e-142	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000218163
AA Change: K88E

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Constitutive homozygous KO is embryonic lethal. Conditional homozygous KO in myeloid cells leads to reduced macrophage migration and podosome formation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410004B18Rik	A	C	3: 145,943,869	*181S	probably null	Het
Abcc10	G	T	17: 46,315,532	S661*	probably null	Het
Abtb2	C	T	2: 103,702,281	R475W	probably damaging	Het
Cep97	T	C	16: 55,905,721	D673G	probably benign	Het
Chaf1b	T	C	16: 93,888,095	M144T	possibly damaging	Het
Chd8	T	C	14: 52,214,277	D1372G	probably damaging	Het
Chmp6	G	A	11: 119,917,010		probably null	Het
Cst12	T	C	2: 148,789,575	V72A	probably damaging	Het
D1Pas1	G	A	1: 186,968,152	G93R	probably damaging	Het
Dhx34	C	A	7: 16,210,523	V589F	probably damaging	Het
Dlg5	G	A	14: 24,245,212	P80L	probably damaging	Het
Dmrta1	C	A	4: 89,688,324	H6N	probably benign	Het
Dopey2	T	C	16: 93,749,963	L285P	probably damaging	Het
Dpy19l1	T	C	9: 24,475,434	Y188C	probably damaging	Het
Ehbp1l1	C	T	19: 5,720,823	R230Q	probably benign	Het
Ep300	T	G	15: 81,650,753	V2337G	probably damaging	Het
Fh1	A	T	1: 175,614,834	V150E	probably damaging	Het
Fkbp11	G	A	15: 98,726,508	R122*	probably null	Het
Fkbp5	C	T	17: 28,412,039	E251K	probably damaging	Het
Frrs1	T	C	3: 116,891,880	V300A	possibly damaging	Het
Glud1	T	G	14: 34,325,522	L198V	possibly damaging	Het
Gsdmc	A	T	15: 63,777,996	W349R	possibly damaging	Het
Hacd1	T	C	2: 14,045,202	H64R	probably damaging	Het
Haus2	T	A	2: 120,613,089	D75E	probably benign	Het
Hmcn1	A	T	1: 150,806,421	F459L	probably damaging	Het
Ighe	A	T	12: 113,271,808	V272E		Het
Iqgap1	C	T	7: 80,743,888	R647H	probably benign	Het
Jmy	T	C	13: 93,499,195	I38V	possibly damaging	Het
Kcnh1	G	T	1: 192,190,859		probably benign	Het
Kctd20	C	T	17: 28,962,875	A167V	probably damaging	Het
Klhl38	A	T	15: 58,314,999	V525E	probably damaging	Het
Krit1	A	G	5: 3,812,788	D259G	probably damaging	Het
Med1	A	T	11: 98,161,210	C443S	probably benign	Het
Mllt6	T	C	11: 97,665,805	V107A	probably benign	Het
Myl7	A	G	11: 5,897,157	M132T	probably benign	Het
Myo10	T	C	15: 25,666,436	V11A	probably damaging	Het
Nipbl	T	C	15: 8,325,752	I1642V	probably benign	Het
Olfr1256	T	C	2: 89,835,124	T274A	probably benign	Het
Olfr807	T	C	10: 129,755,355	T32A	probably benign	Het
Olfr843	C	A	9: 19,249,440		probably benign	Het
Olfr918	C	T	9: 38,673,328	V39M	probably benign	Het
Pcdhb2	C	T	18: 37,296,060	A362V	probably benign	Het
Pnp2	A	T	14: 50,963,559	D167V	possibly damaging	Het
Rasa1	G	A	13: 85,255,411	T282I	probably damaging	Het
Rp1l1	A	G	14: 64,028,027	D354G	probably damaging	Het
Rpap1	C	T	2: 119,775,412		probably null	Het
Rsf1	CGGCGGCGG	CGGCGGCGGGGGCGGCGG	7: 97,579,923		probably benign	Het
Shank3	A	G	15: 89,505,445	D415G	possibly damaging	Het
Slc12a1	A	G	2: 125,161,094	I182V	probably damaging	Het
Slc6a13	A	G	6: 121,335,630	Y441C	probably damaging	Het
Sltm	G	T	9: 70,572,164	E193*	probably null	Het
Spag9	T	C	11: 94,112,066	I1134T	possibly damaging	Het
Spta1	G	A	1: 174,197,785		probably null	Het
Stk3	A	G	15: 35,115,586	V29A	possibly damaging	Het
Tgfbr1	A	T	4: 47,403,489	I365F	probably damaging	Het
Thpo	C	T	16: 20,728,790	V24I	probably benign	Het
Tle1	A	C	4: 72,199,315	L36R	probably damaging	Het
Togaram2	T	C	17: 71,689,173	V57A	probably benign	Het
Ttll9	C	T	2: 153,006,975	A459V	probably benign	Het
Ush1c	T	C	7: 46,221,424	I330V	probably damaging	Het
Usp34	T	C	11: 23,464,718	M2906T		Het
Vmn2r28	A	T	7: 5,490,614	M111K	probably benign	Het
Vmn2r97	T	C	17: 18,947,154	C557R	probably damaging	Het
Zfp873	T	A	10: 82,060,275	I280K	probably benign	Het

Other mutations in Fmnl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00424:Fmnl1	APN	11	103197340	nonsense	probably null
IGL00972:Fmnl1	APN	11	103180955	missense	probably damaging	1.00
IGL01406:Fmnl1	APN	11	103194690	unclassified	probably benign
IGL01417:Fmnl1	APN	11	103196694	unclassified	probably benign
IGL01599:Fmnl1	APN	11	103186656	missense	probably damaging	1.00
IGL02151:Fmnl1	APN	11	103192772	missense	probably benign	0.38
IGL02324:Fmnl1	APN	11	103179538	missense	probably damaging	1.00
IGL02812:Fmnl1	APN	11	103196766	unclassified	probably benign
IGL03369:Fmnl1	APN	11	103197182	splice site	probably null
R0077:Fmnl1	UTSW	11	103189969	missense	probably damaging	1.00
R0241:Fmnl1	UTSW	11	103182170	critical splice donor site	probably null
R0241:Fmnl1	UTSW	11	103182170	critical splice donor site	probably null
R0413:Fmnl1	UTSW	11	103194063	splice site	probably benign
R1170:Fmnl1	UTSW	11	103197370	missense	probably benign	0.02
R1389:Fmnl1	UTSW	11	103186709	splice site	probably null
R1794:Fmnl1	UTSW	11	103197147	missense	probably benign	0.00
R2082:Fmnl1	UTSW	11	103192025	missense	probably damaging	1.00
R2105:Fmnl1	UTSW	11	103194692	missense	probably benign	0.39
R3611:Fmnl1	UTSW	11	103194765	unclassified	probably benign
R3883:Fmnl1	UTSW	11	103182114	missense	probably damaging	1.00
R3893:Fmnl1	UTSW	11	103196757	unclassified	probably benign
R4658:Fmnl1	UTSW	11	103197694	missense	probably damaging	1.00
R4689:Fmnl1	UTSW	11	103193736	critical splice donor site	probably null
R4812:Fmnl1	UTSW	11	103198564	unclassified	probably benign
R4996:Fmnl1	UTSW	11	103182656	missense	possibly damaging	0.58
R5646:Fmnl1	UTSW	11	103196512	unclassified	probably benign
R5702:Fmnl1	UTSW	11	103185665	missense	probably damaging	1.00
R5850:Fmnl1	UTSW	11	103195285	unclassified	probably benign
R5903:Fmnl1	UTSW	11	103171444	splice site	probably null
R6254:Fmnl1	UTSW	11	103196315	unclassified	probably benign
R6958:Fmnl1	UTSW	11	103171314	start codon destroyed	probably null	1.00
R7030:Fmnl1	UTSW	11	103194774	unclassified	probably benign
R7133:Fmnl1	UTSW	11	103181784	critical splice donor site	probably null
R7171:Fmnl1	UTSW	11	103190398	missense	probably damaging	1.00
R7224:Fmnl1	UTSW	11	103182769	critical splice donor site	probably null
R7282:Fmnl1	UTSW	11	103196265	missense	unknown
R7448:Fmnl1	UTSW	11	103186627	missense	probably damaging	1.00
R7463:Fmnl1	UTSW	11	103193128	missense	probably damaging	1.00
R7831:Fmnl1	UTSW	11	103198173	missense	unknown
R7973:Fmnl1	UTSW	11	103171158	start gained	probably benign
R8177:Fmnl1	UTSW	11	103189959	missense	probably damaging	0.98
R8273:Fmnl1	UTSW	11	103186699	missense	probably damaging	1.00
R8345:Fmnl1	UTSW	11	103186614	missense	possibly damaging	0.88
R8507:Fmnl1	UTSW	11	103194033	missense	unknown

Predicted Primers

PCR Primer
(F):5'- ACATGGCCAAAGTTTGTGCC -3'
(R):5'- ATGTATGGACTCAGGGATACACAAG -3'

Sequencing Primer
(F):5'- GCCTTTGGTATTTCAGAAGCAG -3'
(R):5'- TCTATGCATGAATACACAGGGTGC -3'

Posted On

2019-12-20