Mutagenetix > Incidental Mutation

Incidental Mutation 'R7869:Lrif1'

607958

Institutional Source

Beutler Lab

Gene Symbol

Lrif1

Ensembl Gene

ENSMUSG00000056260

Gene Name

ligand dependent nuclear receptor interacting factor 1

Synonyms

4933421E11Rik, 2010012G17Rik

MMRRC Submission

045921-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.067) question?

Stock #

R7869 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

106592303-106643893 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

G to A at 106640459 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000096346 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098750] [ENSMUST00000098751] [ENSMUST00000106736] [ENSMUST00000127003] [ENSMUST00000130105] [ENSMUST00000150513] [ENSMUST00000154973]

AlphaFold

Q8CDD9

Predicted Effect

probably null
Transcript: ENSMUST00000098750

SMART Domains

Protein: ENSMUSP00000096346
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
Pfam:LRIF1	22	753	1.7e-292	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000098751

SMART Domains

Protein: ENSMUSP00000096347
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	104	117	N/A	INTRINSIC
coiled coil region	225	257	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106736

SMART Domains

Protein: ENSMUSP00000102347
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	84	97	N/A	INTRINSIC
coiled coil region	205	237	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127003

SMART Domains

Protein: ENSMUSP00000114163
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	74	92	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000130105

SMART Domains

Protein: ENSMUSP00000115110
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	49	67	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000150513

SMART Domains

Protein: ENSMUSP00000119815
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	49	67	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154973

SMART Domains

Protein: ENSMUSP00000120350
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	49	67	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900026A02Rik	G	A	5: 113,332,001 (GRCm39)	R738C	possibly damaging	Het
Acot12	G	A	13: 91,919,844 (GRCm39)	V260M	probably benign	Het
Alkbh8	A	T	9: 3,359,503 (GRCm39)	H264L	probably damaging	Het
Arfgef2	C	T	2: 166,715,623 (GRCm39)	T1356I	probably damaging	Het
Arhgap27	A	T	11: 103,251,130 (GRCm39)	N199K	probably damaging	Het
Asic2	T	C	11: 81,858,824 (GRCm39)	R63G	probably damaging	Het
Aspa	T	A	11: 73,204,378 (GRCm39)	M197L	probably benign	Het
BC005537	C	T	13: 24,987,382 (GRCm39)	R7W	possibly damaging	Het
Brdt	A	T	5: 107,518,045 (GRCm39)	I723L	probably benign	Het
C2cd3	T	A	7: 100,118,698 (GRCm39)	F2312Y	probably damaging	Het
Cd19	T	C	7: 126,009,698 (GRCm39)	N456S	probably damaging	Het
Ceacam1	G	T	7: 25,175,954 (GRCm39)	A80E	probably damaging	Het
Cep135	T	C	5: 76,788,803 (GRCm39)	V1132A	probably benign	Het
Cep85	A	G	4: 133,859,609 (GRCm39)	C687R	probably damaging	Het
Cln5	A	G	14: 103,313,501 (GRCm39)	Y251C	probably damaging	Het
Crygc	A	G	1: 65,111,014 (GRCm39)	M91T	possibly damaging	Het
Ddt	T	C	10: 75,609,060 (GRCm39)	K33R	probably damaging	Het
Dhfr	G	A	13: 92,494,471 (GRCm39)	W58*	probably null	Het
Dhx40	T	C	11: 86,688,532 (GRCm39)	E297G	probably benign	Het
Dner	T	C	1: 84,361,602 (GRCm39)	Y669C	probably benign	Het
Dpys	G	T	15: 39,656,782 (GRCm39)	F428L	probably damaging	Het
Dspp	A	C	5: 104,323,531 (GRCm39)	T225P	probably damaging	Het
Elac2	A	G	11: 64,890,213 (GRCm39)	K656E	probably damaging	Het
Ern1	T	A	11: 106,349,845 (GRCm39)	R24*	probably null	Het
F2rl2	T	C	13: 95,837,519 (GRCm39)	I188T	probably damaging	Het
Fam83b	C	T	9: 76,399,426 (GRCm39)	C559Y	possibly damaging	Het
Fat1	T	G	8: 45,504,259 (GRCm39)	F4584C	probably benign	Het
Gabra6	G	A	11: 42,207,322 (GRCm39)	T254I	possibly damaging	Het
Garem1	T	C	18: 21,432,757 (GRCm39)	D24G	probably damaging	Het
Gas2l2	A	T	11: 83,312,816 (GRCm39)	L832*	probably null	Het
Gpr68	C	T	12: 100,845,497 (GRCm39)	D16N	probably benign	Het
Il17b	T	C	18: 61,825,480 (GRCm39)	I172T	probably damaging	Het
Ildr2	T	G	1: 166,136,861 (GRCm39)	S567A	probably benign	Het
Kalrn	A	G	16: 33,809,217 (GRCm39)	V2557A	probably damaging	Het
Kif1b	A	G	4: 149,268,833 (GRCm39)	S1627P	probably benign	Het
Kif5a	G	A	10: 127,079,343 (GRCm39)	T285M	probably damaging	Het
Lrrn2	C	T	1: 132,867,116 (GRCm39)	T727I	unknown	Het
Lsg1	T	C	16: 30,383,540 (GRCm39)	E560G	probably benign	Het
Map4k4	C	A	1: 40,013,204 (GRCm39)	Q100K	unknown	Het
Mipep	A	T	14: 61,040,385 (GRCm39)	R302W	probably damaging	Het
Morf4l1	G	T	9: 89,975,844 (GRCm39)	T316K	probably damaging	Het
Mov10	A	T	3: 104,711,994 (GRCm39)	V126E	probably damaging	Het
Muc2	T	A	7: 141,303,471 (GRCm39)	C559S		Het
Myh7	A	G	14: 55,226,530 (GRCm39)	Y410H	probably damaging	Het
Nf1	T	A	11: 79,309,414 (GRCm39)	Y433N	probably damaging	Het
Nmd3	T	C	3: 69,633,750 (GRCm39)	L79P	probably damaging	Het
Nol10	G	T	12: 17,408,239 (GRCm39)	S155I	probably null	Het
Or2n1	T	C	17: 38,486,830 (GRCm39)	L285P	possibly damaging	Het
Or4p8	T	C	2: 88,727,408 (GRCm39)	I178V	probably benign	Het
Or52n2c	T	A	7: 104,574,311 (GRCm39)	Y220F	probably damaging	Het
Or5b12	A	G	19: 12,896,911 (GRCm39)	I254T	probably benign	Het
Pde3b	T	C	7: 114,093,922 (GRCm39)	S389P	probably benign	Het
Polr1c	C	T	17: 46,555,817 (GRCm39)	G188D	probably benign	Het
Prpf31	A	G	7: 3,633,859 (GRCm39)	M65V	probably benign	Het
Pum2	A	G	12: 8,763,595 (GRCm39)	T251A	probably benign	Het
Rabgap1	G	A	2: 37,377,142 (GRCm39)	V325I	probably benign	Het
Repin1	G	T	6: 48,574,279 (GRCm39)	E403*	probably null	Het
Rpl15	G	T	14: 18,269,017 (GRCm38)	Y203*	probably null	Het
Sac3d1	G	A	19: 6,168,456 (GRCm39)	P54L	possibly damaging	Het
Serpina3g	A	G	12: 104,206,510 (GRCm39)	I104V	probably benign	Het
Setd2	C	T	9: 110,379,082 (GRCm39)	Q966*	probably null	Het
Simc1	G	T	13: 54,651,713 (GRCm39)	D9Y	unknown	Het
Slc5a8	T	C	10: 88,757,567 (GRCm39)	L519S	probably benign	Het
Srcap	C	A	7: 127,138,366 (GRCm39)	Q1179K	possibly damaging	Het
Srd5a3	T	C	5: 76,295,583 (GRCm39)	L91P	probably damaging	Het
Stab1	T	C	14: 30,876,429 (GRCm39)	T887A	probably benign	Het
Sult2a6	A	G	7: 13,988,737 (GRCm39)	F8L	not run	Het
Thsd7a	A	T	6: 12,471,123 (GRCm39)	C498*	probably null	Het
Timp4	T	C	6: 115,227,355 (GRCm39)	I75V	probably benign	Het
Tspyl4	T	A	10: 34,174,096 (GRCm39)	M196K	probably damaging	Het
Ubr2	T	C	17: 47,301,934 (GRCm39)	E172G	probably benign	Het
Ubr5	G	A	15: 37,980,076 (GRCm39)	A2434V	probably null	Het
Unc13c	T	G	9: 73,602,159 (GRCm39)	L1362F	probably damaging	Het
Vmn2r11	A	G	5: 109,199,986 (GRCm39)	V489A	probably damaging	Het
Vps39	T	C	2: 120,169,875 (GRCm39)	T226A	possibly damaging	Het
Zan	C	T	5: 137,471,863 (GRCm39)	E185K	probably damaging	Het

Other mutations in Lrif1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00870:Lrif1	APN	3	106,641,957 (GRCm39)	critical splice donor site	probably null
IGL01121:Lrif1	APN	3	106,642,980 (GRCm39)	nonsense	probably null
IGL01304:Lrif1	APN	3	106,639,049 (GRCm39)	missense	probably damaging	1.00
IGL02209:Lrif1	APN	3	106,639,045 (GRCm39)	missense	probably damaging	1.00
IGL02801:Lrif1	APN	3	106,641,930 (GRCm39)	missense	possibly damaging	0.89
IGL02796:Lrif1	UTSW	3	106,642,752 (GRCm39)	missense	probably benign	0.25
R0440:Lrif1	UTSW	3	106,641,714 (GRCm39)	missense	possibly damaging	0.87
R0456:Lrif1	UTSW	3	106,639,094 (GRCm39)	missense	probably benign	0.06
R0561:Lrif1	UTSW	3	106,639,481 (GRCm39)	missense	probably damaging	1.00
R1160:Lrif1	UTSW	3	106,640,033 (GRCm39)	missense	possibly damaging	0.95
R1720:Lrif1	UTSW	3	106,640,452 (GRCm39)	missense	probably damaging	1.00
R1735:Lrif1	UTSW	3	106,643,162 (GRCm39)	makesense	probably null
R1843:Lrif1	UTSW	3	106,640,127 (GRCm39)	missense	probably damaging	0.99
R2016:Lrif1	UTSW	3	106,639,522 (GRCm39)	missense	possibly damaging	0.94
R2200:Lrif1	UTSW	3	106,641,874 (GRCm39)	missense	probably damaging	0.98
R3619:Lrif1	UTSW	3	106,639,862 (GRCm39)	missense	probably damaging	1.00
R4750:Lrif1	UTSW	3	106,642,880 (GRCm39)	missense	probably benign	0.33
R4878:Lrif1	UTSW	3	106,642,956 (GRCm39)	missense	probably damaging	1.00
R4945:Lrif1	UTSW	3	106,643,069 (GRCm39)	missense	probably damaging	1.00
R5286:Lrif1	UTSW	3	106,639,859 (GRCm39)	missense	probably damaging	0.97
R5682:Lrif1	UTSW	3	106,639,884 (GRCm39)	missense	possibly damaging	0.70
R6149:Lrif1	UTSW	3	106,639,643 (GRCm39)	missense	possibly damaging	0.83
R6665:Lrif1	UTSW	3	106,642,659 (GRCm39)	splice site	probably null
R7011:Lrif1	UTSW	3	106,639,601 (GRCm39)	missense	probably damaging	1.00
R7584:Lrif1	UTSW	3	106,639,217 (GRCm39)	missense	probably benign	0.32
R8247:Lrif1	UTSW	3	106,641,692 (GRCm39)	missense	probably damaging	1.00
R8686:Lrif1	UTSW	3	106,640,097 (GRCm39)	missense	probably damaging	1.00
R9001:Lrif1	UTSW	3	106,641,860 (GRCm39)	missense	probably benign	0.00
R9347:Lrif1	UTSW	3	106,641,674 (GRCm39)	missense	possibly damaging	0.71
R9612:Lrif1	UTSW	3	106,639,200 (GRCm39)	missense	probably damaging	0.99
Z1088:Lrif1	UTSW	3	106,639,886 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TGAACCAGTCCACTCACTGC -3'
(R):5'- GACCTATCACTGTCCAAATCTTCTG -3'

Sequencing Primer
(F):5'- TCACTGCCTTAAACAGAGTAAGACTG -3'
(R):5'- TGGATTTGGCGAGCTAAATAATG -3'

Posted On

2019-12-20