Mutagenetix > Incidental Mutation

Incidental Mutation 'R7886:Sirpb1c'

609045

Institutional Source

Beutler Lab

Gene Symbol

Sirpb1c

Ensembl Gene

ENSMUSG00000074677

Gene Name

signal-regulatory protein beta 1C

Synonyms

MMRRC Submission

045938-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.050) question?

Stock #

R7886 (G1)

Quality Score

110.008

Status

Not validated

Chromosome

Chromosomal Location

15849311-15902694 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 15886366 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 337 (A337T)

Ref Sequence

ENSEMBL: ENSMUSP00000103989 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050623] [ENSMUST00000108349] [ENSMUST00000108350] [ENSMUST00000108352] [ENSMUST00000108354]

AlphaFold

K7N6K7

Predicted Effect

probably benign
Transcript: ENSMUST00000050623
AA Change: A337T

PolyPhen 2 Score 0.076 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000061216
Gene: ENSMUSG00000074677
AA Change: A337T

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	3.51e-8	SMART
IGc1	163	236	4.07e-4	SMART
IGc1	266	339	2.21e-5	SMART
transmembrane domain	364	386	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000108349
AA Change: A335T

PolyPhen 2 Score 0.439 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000103986
Gene: ENSMUSG00000074677
AA Change: A335T

Domain	Start	End	E-Value	Type
low complexity region	15	23	N/A	INTRINSIC
IG	35	141	3.51e-8	SMART
IGc1	161	234	4.07e-4	SMART
IGc1	264	337	2.21e-5	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000108350
AA Change: A337T

PolyPhen 2 Score 0.834 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000103987
Gene: ENSMUSG00000074677
AA Change: A337T

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	3.51e-8	SMART
IGc1	163	236	4.07e-4	SMART
IGc1	266	339	2.21e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000108352
AA Change: A337T

PolyPhen 2 Score 0.103 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000103989
Gene: ENSMUSG00000074677
AA Change: A337T

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	3.51e-8	SMART
IGc1	163	236	4.07e-4	SMART
IGc1	266	339	2.21e-5	SMART
transmembrane domain	370	392	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000108354
AA Change: A337T

PolyPhen 2 Score 0.439 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000103991
Gene: ENSMUSG00000074677
AA Change: A337T

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	37	143	3.51e-8	SMART
IGc1	163	236	4.07e-4	SMART
IGc1	266	339	2.21e-5	SMART

Predicted Effect

SMART Domains

Protein: ENSMUSP00000120527
Gene: ENSMUSG00000074677
AA Change: A205T

Domain	Start	End	E-Value	Type
IGc1	32	105	4.07e-4	SMART
IGc1	135	208	2.21e-5	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (53/53)

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A730049H05Rik	T	G	6: 92,811,437 (GRCm39)	I130S	unknown	Het
Ano5	A	G	7: 51,220,141 (GRCm39)	H427R	probably benign	Het
Atad2	A	T	15: 57,989,532 (GRCm39)	V182E	probably damaging	Het
B4galnt1	T	C	10: 127,002,923 (GRCm39)	Y147H	probably damaging	Het
C1s2	T	C	6: 124,605,289 (GRCm39)	S349G	possibly damaging	Het
Ccdc51	G	T	9: 108,920,655 (GRCm39)	A181S	probably damaging	Het
Dcc	G	A	18: 72,087,939 (GRCm39)	Q100*	probably null	Het
Dchs2	A	T	3: 83,212,392 (GRCm39)	I2064F	probably damaging	Het
Depdc1a	G	A	3: 159,221,706 (GRCm39)	V217I	probably benign	Het
Dnajc7	A	T	11: 100,492,629 (GRCm39)	F31I	probably benign	Het
Eftud2	C	T	11: 102,730,934 (GRCm39)	R825H	probably damaging	Het
Fam184a	T	C	10: 53,551,256 (GRCm39)	E237G	probably damaging	Het
Fdx2	A	T	9: 20,984,623 (GRCm39)		probably null	Het
Frem1	T	C	4: 82,934,643 (GRCm39)	D106G	possibly damaging	Het
Gabrg3	G	A	7: 56,374,229 (GRCm39)	R446W	probably damaging	Het
Get1	T	A	16: 95,946,768 (GRCm39)	L31Q	possibly damaging	Het
Gm42669	A	G	5: 107,656,572 (GRCm39)	E362G		Het
Hmcn1	A	T	1: 150,533,221 (GRCm39)	I3022N	possibly damaging	Het
Ifna2	C	A	4: 88,601,506 (GRCm39)	V171F	probably damaging	Het
Igsf10	T	C	3: 59,235,748 (GRCm39)	N1478D	probably benign	Het
Kcnc1	C	A	7: 46,077,045 (GRCm39)	D282E	probably damaging	Het
Klhdc2	G	A	12: 69,351,406 (GRCm39)		probably null	Het
Macrod2	G	A	2: 141,566,565 (GRCm39)	G188S	probably damaging	Het
Mapkbp1	T	C	2: 119,843,128 (GRCm39)	F186L	possibly damaging	Het
Mettl21a	T	C	1: 64,654,343 (GRCm39)	E58G	probably damaging	Het
Muc16	A	T	9: 18,497,278 (GRCm39)	C6625S	probably benign	Het
Naip5	A	T	13: 100,382,689 (GRCm39)	S7T	probably benign	Het
Nfs1	T	A	2: 155,983,981 (GRCm39)	D132V	unknown	Het
Nlgn1	T	C	3: 25,490,071 (GRCm39)	D552G	probably damaging	Het
Numa1	C	T	7: 101,663,072 (GRCm39)	T2066I	probably benign	Het
Or10k2	T	C	8: 84,268,576 (GRCm39)	S268P	possibly damaging	Het
Or2t48	C	A	11: 58,419,880 (GRCm39)	V311L	probably benign	Het
Or4k2	A	T	14: 50,424,021 (GRCm39)	Y219N	probably damaging	Het
Or7a39	A	G	10: 78,715,657 (GRCm39)	Y217C	possibly damaging	Het
Or7g29	A	T	9: 19,287,202 (GRCm39)		probably null	Het
Pde11a	C	T	2: 76,121,547 (GRCm39)	V345I	probably benign	Het
Pglyrp2	A	G	17: 32,637,735 (GRCm39)	S98P	possibly damaging	Het
Pik3c3	C	T	18: 30,452,641 (GRCm39)	Q643*	probably null	Het
Pold2	T	C	11: 5,822,714 (GRCm39)	Y402C	probably damaging	Het
Pom121	T	C	5: 135,410,848 (GRCm39)	T770A	unknown	Het
Pou4f1	A	T	14: 104,704,228 (GRCm39)	V68E	probably damaging	Het
Ppfia1	G	T	7: 144,073,020 (GRCm39)	Q265K	probably benign	Het
Pygl	A	G	12: 70,253,130 (GRCm39)		probably null	Het
Rdh19	A	G	10: 127,686,169 (GRCm39)	T94A	probably benign	Het
Scgb1b12	A	G	7: 32,033,922 (GRCm39)	T61A	probably damaging	Het
Sltm	C	G	9: 70,493,955 (GRCm39)	P802R	possibly damaging	Het
Tbc1d23	T	C	16: 57,009,746 (GRCm39)	E381G	possibly damaging	Het
Tnik	A	G	3: 28,720,288 (GRCm39)	I1304V	probably damaging	Het
Tpmt	C	A	13: 47,193,638 (GRCm39)	G54C	probably damaging	Het
Usp25	A	T	16: 76,910,659 (GRCm39)	Q905L	probably damaging	Het
Vmn1r91	T	A	7: 19,835,490 (GRCm39)	N136K	probably benign	Het
Wdr70	C	T	15: 8,108,733 (GRCm39)	E138K	probably benign	Het
Zbed3	A	G	13: 95,472,633 (GRCm39)	D19G	possibly damaging	Het
Zfp369	A	G	13: 65,439,868 (GRCm39)	K184R	possibly damaging	Het

Other mutations in Sirpb1c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01963:Sirpb1c	APN	3	15,892,937 (GRCm39)	missense	probably benign	0.06
R0094:Sirpb1c	UTSW	3	15,892,922 (GRCm39)	missense	possibly damaging	0.73
R0356:Sirpb1c	UTSW	3	15,887,309 (GRCm39)	missense	possibly damaging	0.95
R0442:Sirpb1c	UTSW	3	15,856,710 (GRCm39)	missense	probably benign	0.09
R3731:Sirpb1c	UTSW	3	15,887,287 (GRCm39)	missense	probably damaging	1.00
R4812:Sirpb1c	UTSW	3	15,887,386 (GRCm39)	missense	probably damaging	0.99
R5802:Sirpb1c	UTSW	3	15,886,240 (GRCm39)	missense	probably benign	0.00
R6315:Sirpb1c	UTSW	3	15,886,470 (GRCm39)	missense	possibly damaging	0.71
R7107:Sirpb1c	UTSW	3	15,892,941 (GRCm39)	missense	possibly damaging	0.91
R7148:Sirpb1c	UTSW	3	15,887,223 (GRCm39)	nonsense	probably null
R7349:Sirpb1c	UTSW	3	15,886,310 (GRCm39)	critical splice donor site	probably null
R7356:Sirpb1c	UTSW	3	15,886,297 (GRCm39)	missense	probably benign
R7359:Sirpb1c	UTSW	3	15,887,389 (GRCm39)	missense	probably benign	0.02
R7466:Sirpb1c	UTSW	3	15,886,430 (GRCm39)	missense	probably damaging	1.00
R7629:Sirpb1c	UTSW	3	15,902,559 (GRCm39)	missense	possibly damaging	0.86
R7720:Sirpb1c	UTSW	3	15,886,236 (GRCm39)	missense	probably benign	0.00
R7726:Sirpb1c	UTSW	3	15,902,550 (GRCm39)	missense	possibly damaging	0.92
R7853:Sirpb1c	UTSW	3	15,887,156 (GRCm39)	missense	probably damaging	1.00
R8519:Sirpb1c	UTSW	3	15,902,526 (GRCm39)	missense	possibly damaging	0.72
R8847:Sirpb1c	UTSW	3	15,886,584 (GRCm39)	nonsense	probably null
R8854:Sirpb1c	UTSW	3	15,887,308 (GRCm39)	missense	possibly damaging	0.83

Predicted Primers

PCR Primer
(F):5'- ACGTGTGAGAAGTTGGGAAT -3'
(R):5'- GTTCTATCCTCCAAGGTTTCAGG -3'

Sequencing Primer
(F):5'- GTTGGGAATGAAATATGACGTTAAC -3'
(R):5'- CTCCAAGGTTTCAGGTGACC -3'

Posted On

2019-12-20