Mutagenetix > Incidental Mutation

Incidental Mutation 'R7899:Ints7'

609857

Institutional Source

Beutler Lab

Gene Symbol

Ints7

Ensembl Gene

ENSMUSG00000037461

Gene Name

integrator complex subunit 7

Synonyms

5930412E23Rik

MMRRC Submission

045951-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.949) question?

Stock #

R7899 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

191307748-191355800 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 191353427 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 918 (W918R)

Ref Sequence

ENSEMBL: ENSMUSP00000036277 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045450] [ENSMUST00000194785] [ENSMUST00000194877]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000045450
AA Change: W918R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000036277
Gene: ENSMUSG00000037461
AA Change: W918R

Domain	Start	End	E-Value	Type
SCOP:d1gw5a_	76	530	1e-10	SMART
low complexity region	937	960	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000194785

Predicted Effect

probably benign
Transcript: ENSMUST00000194877

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

97% (70/72)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a subunit of the integrator complex. The integrator complex associates with the C-terminal domain of RNA polymerase II and mediates 3'-end processing of the small nuclear RNAs U1 and U2. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Dec 2010]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1500011B03Rik	T	C	5: 114,947,381 (GRCm39)	T49A	possibly damaging	Het
A530084C06Rik	G	T	13: 31,742,978 (GRCm39)	R92S	unknown	Het
Aagab	T	C	9: 63,524,132 (GRCm39)	F80L	probably benign	Het
Aox1	A	G	1: 58,320,396 (GRCm39)		probably null	Het
Arhgef2	T	C	3: 88,528,569 (GRCm39)	S2P	probably damaging	Het
Bcar3	T	G	3: 122,301,902 (GRCm39)	V199G	probably damaging	Het
C1ra	G	A	6: 124,494,684 (GRCm39)	E316K	probably benign	Het
Cacna1a	G	A	8: 85,320,802 (GRCm39)	V1587M	possibly damaging	Het
Caps2	C	A	10: 112,001,666 (GRCm39)	S19Y	possibly damaging	Het
Ccdc196	A	G	12: 78,244,196 (GRCm39)	N50D		Het
Cep89	G	A	7: 35,129,353 (GRCm39)	R630H	probably damaging	Het
Cobll1	A	G	2: 64,956,275 (GRCm39)	C328R	probably damaging	Het
Colec11	A	C	12: 28,645,281 (GRCm39)	V130G	probably damaging	Het
Dennd5b	A	T	6: 148,943,159 (GRCm39)	D572E	probably damaging	Het
Dido1	A	T	2: 180,313,390 (GRCm39)	S961T	possibly damaging	Het
Dnah7c	A	T	1: 46,553,861 (GRCm39)	M380L	probably benign	Het
Dnai2	T	C	11: 114,629,456 (GRCm39)	I161T	probably benign	Het
Dnttip2	T	A	3: 122,076,018 (GRCm39)	M650K	probably damaging	Het
Dpp6	C	T	5: 27,926,077 (GRCm39)	P717L	probably benign	Het
Epha10	A	G	4: 124,808,628 (GRCm39)	E759G		Het
Frmd4a	T	C	2: 4,608,900 (GRCm39)	W923R	probably damaging	Het
Ftsj3	C	A	11: 106,143,115 (GRCm39)	E400*	probably null	Het
Gabra4	C	A	5: 71,815,338 (GRCm39)		probably benign	Het
Gfm1	T	A	3: 67,380,860 (GRCm39)	N658K	probably benign	Het
Gm21560	A	T	14: 6,218,220 (GRCm38)	I86N	probably damaging	Het
Gpr68	C	A	12: 100,844,707 (GRCm39)	C279F	probably damaging	Het
Hspg2	G	A	4: 137,275,427 (GRCm39)	A2752T	possibly damaging	Het
Hydin	A	T	8: 111,314,380 (GRCm39)	D4288V	probably benign	Het
Ift74	A	G	4: 94,510,214 (GRCm39)	T82A	possibly damaging	Het
Kcnc1	T	A	7: 46,077,245 (GRCm39)	I349N	probably damaging	Het
Loxl1	C	T	9: 58,198,117 (GRCm39)	D580N	probably damaging	Het
Mlph	A	T	1: 90,869,485 (GRCm39)	R496*	probably null	Het
Mtdh	A	G	15: 34,123,865 (GRCm39)	D364G	possibly damaging	Het
Mtmr11	C	A	3: 96,077,744 (GRCm39)	L580I	probably damaging	Het
Muc16	T	C	9: 18,551,993 (GRCm39)	I4767V	probably benign	Het
Muc21	TCAGGGTGGGGGTAGAGCCTGAGCCACTGCTAGATGCAGTGGTGGGCAGGGTGGGGGTAGAGCCTGAG	TCAGGGTGGGGGTAGAGCCTGAG	17: 35,931,493 (GRCm39)		probably benign	Het
Myot	A	G	18: 44,487,251 (GRCm39)	T363A	probably benign	Het
Nfxl1	G	A	5: 72,681,558 (GRCm39)	P658S	probably damaging	Het
Nhlrc3	A	C	3: 53,369,080 (GRCm39)	S120A	probably benign	Het
Nmur2	C	A	11: 55,931,161 (GRCm39)	Q183H	probably benign	Het
Nucb2	T	A	7: 116,121,205 (GRCm39)	I45K	probably benign	Het
Nup155	A	T	15: 8,148,663 (GRCm39)	D277V	probably damaging	Het
Or5ak25	T	C	2: 85,268,741 (GRCm39)	T254A	probably benign	Het
Orc1	T	G	4: 108,460,568 (GRCm39)		probably null	Het
Panx2	A	G	15: 88,952,936 (GRCm39)	T468A	possibly damaging	Het
Pcdh7	A	G	5: 57,877,152 (GRCm39)	S236G	probably benign	Het
Pcdhga2	G	C	18: 37,803,910 (GRCm39)	G585R	probably damaging	Het
Perm1	TGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCT	TGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCT	4: 156,302,525 (GRCm39)		probably benign	Het
Pgr	T	G	9: 8,903,743 (GRCm39)	M588R	probably benign	Het
Ptpn18	A	T	1: 34,508,986 (GRCm39)		probably null	Het
Rbm8a2	T	A	1: 175,806,207 (GRCm39)	H90L	probably benign	Het
Ryr3	A	T	2: 112,477,295 (GRCm39)	L4507Q	possibly damaging	Het
Serpina12	A	G	12: 104,004,524 (GRCm39)	V36A	probably benign	Het
Sis	T	A	3: 72,844,584 (GRCm39)	S717C	probably damaging	Het
Slit2	A	G	5: 48,404,527 (GRCm39)	E846G	possibly damaging	Het
Smr3a	C	T	5: 88,156,086 (GRCm39)	H85Y	unknown	Het
Sned1	G	C	1: 93,201,804 (GRCm39)	R590P	probably benign	Het
Spata31h1	A	G	10: 82,118,731 (GRCm39)	S4760P	unknown	Het
Sting1	A	G	18: 35,867,626 (GRCm39)	S357P	probably damaging	Het
Sult2a7	A	G	7: 14,199,134 (GRCm39)	Y298H	probably damaging	Het
Syn3	A	G	10: 85,900,793 (GRCm39)	V365A	possibly damaging	Het
Syne1	A	T	10: 5,177,956 (GRCm39)	Y4839*	probably null	Het
Taf4	G	A	2: 179,573,822 (GRCm39)	T682M	probably damaging	Het
Tbl3	G	T	17: 24,921,458 (GRCm39)	H478N	probably damaging	Het
Tcirg1	A	T	19: 3,949,104 (GRCm39)	I395N	probably damaging	Het
Ticrr	T	C	7: 79,319,233 (GRCm39)	I406T	probably benign	Het
Tmem120a	C	A	5: 135,766,052 (GRCm39)	K123N	probably benign	Het
Tmem184c	A	G	8: 78,324,440 (GRCm39)	V350A	probably damaging	Het
Tmem70	G	T	1: 16,747,268 (GRCm39)	M128I	probably benign	Het
Tmx3	A	T	18: 90,545,998 (GRCm39)		probably null	Het
Topors	G	C	4: 40,260,356 (GRCm39)	S976W	unknown	Het
Trp53	T	C	11: 69,481,519 (GRCm39)	L341P	probably damaging	Het
Usp14	T	C	18: 10,000,563 (GRCm39)	K366E	possibly damaging	Het
Zbtb49	G	T	5: 38,371,274 (GRCm39)	C202*	probably null	Het
Zkscan5	A	C	5: 145,157,676 (GRCm39)	H726P	probably damaging	Het

Other mutations in Ints7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00904:Ints7	APN	1	191,328,276 (GRCm39)	splice site	probably null
IGL01285:Ints7	APN	1	191,347,890 (GRCm39)	missense	probably benign	0.00
IGL01289:Ints7	APN	1	191,347,890 (GRCm39)	missense	probably benign	0.00
IGL01572:Ints7	APN	1	191,347,905 (GRCm39)	missense	possibly damaging	0.71
IGL01665:Ints7	APN	1	191,345,331 (GRCm39)	splice site	probably benign
IGL02059:Ints7	APN	1	191,347,872 (GRCm39)	missense	probably benign	0.23
IGL02684:Ints7	APN	1	191,345,749 (GRCm39)	critical splice acceptor site	probably null
IGL02686:Ints7	APN	1	191,318,704 (GRCm39)	missense	probably damaging	1.00
IGL02812:Ints7	APN	1	191,351,853 (GRCm39)	missense	probably damaging	1.00
IGL03119:Ints7	APN	1	191,342,477 (GRCm39)	missense	probably damaging	1.00
IGL03162:Ints7	APN	1	191,353,524 (GRCm39)	utr 3 prime	probably benign
PIT4810001:Ints7	UTSW	1	191,328,348 (GRCm39)	missense	probably damaging	0.99
R0294:Ints7	UTSW	1	191,344,003 (GRCm39)	missense	possibly damaging	0.91
R0479:Ints7	UTSW	1	191,346,666 (GRCm39)	splice site	probably null
R0698:Ints7	UTSW	1	191,326,576 (GRCm39)	missense	probably damaging	0.97
R1420:Ints7	UTSW	1	191,345,169 (GRCm39)	missense	possibly damaging	0.73
R1680:Ints7	UTSW	1	191,353,274 (GRCm39)	splice site	probably null
R1781:Ints7	UTSW	1	191,328,396 (GRCm39)	missense	possibly damaging	0.95
R2141:Ints7	UTSW	1	191,336,972 (GRCm39)	missense	possibly damaging	0.73
R2291:Ints7	UTSW	1	191,338,315 (GRCm39)	splice site	probably null
R4718:Ints7	UTSW	1	191,315,389 (GRCm39)	missense	possibly damaging	0.60
R4741:Ints7	UTSW	1	191,351,747 (GRCm39)	missense	probably benign	0.29
R4797:Ints7	UTSW	1	191,329,045 (GRCm39)	missense	probably damaging	1.00
R4812:Ints7	UTSW	1	191,326,542 (GRCm39)	missense	possibly damaging	0.73
R4826:Ints7	UTSW	1	191,344,018 (GRCm39)	missense	probably damaging	0.97
R4870:Ints7	UTSW	1	191,328,443 (GRCm39)	missense	probably damaging	0.97
R5169:Ints7	UTSW	1	191,345,202 (GRCm39)	missense	probably benign	0.00
R5281:Ints7	UTSW	1	191,347,883 (GRCm39)	missense	possibly damaging	0.90
R5694:Ints7	UTSW	1	191,318,730 (GRCm39)	missense	probably damaging	1.00
R5752:Ints7	UTSW	1	191,308,005 (GRCm39)	missense	probably benign	0.00
R6048:Ints7	UTSW	1	191,353,524 (GRCm39)	utr 3 prime	probably benign
R6341:Ints7	UTSW	1	191,345,239 (GRCm39)	missense	probably damaging	1.00
R6419:Ints7	UTSW	1	191,334,414 (GRCm39)	missense	possibly damaging	0.69
R7037:Ints7	UTSW	1	191,351,717 (GRCm39)	missense	probably benign	0.16
R7163:Ints7	UTSW	1	191,349,949 (GRCm39)	missense	possibly damaging	0.67
R7603:Ints7	UTSW	1	191,328,336 (GRCm39)	missense	probably damaging	1.00
R7801:Ints7	UTSW	1	191,347,859 (GRCm39)	missense	possibly damaging	0.84
R8034:Ints7	UTSW	1	191,345,183 (GRCm39)	frame shift	probably null
R8034:Ints7	UTSW	1	191,345,180 (GRCm39)	frame shift	probably null
R8231:Ints7	UTSW	1	191,328,465 (GRCm39)	nonsense	probably null
R8251:Ints7	UTSW	1	191,353,545 (GRCm39)	missense	unknown
R8520:Ints7	UTSW	1	191,314,603 (GRCm39)	missense	probably damaging	1.00
R8966:Ints7	UTSW	1	191,351,717 (GRCm39)	missense	probably benign	0.16
R9198:Ints7	UTSW	1	191,351,872 (GRCm39)	missense	probably benign	0.42
R9382:Ints7	UTSW	1	191,351,793 (GRCm39)	missense	probably damaging	1.00
Z1177:Ints7	UTSW	1	191,342,570 (GRCm39)	missense	probably benign	0.06

Predicted Primers

PCR Primer
(F):5'- CTGGCTCCTGGAGAATACTG -3'
(R):5'- TGCACATGCGGAAGACTCTTC -3'

Sequencing Primer
(F):5'- CTCCTGGAGAATACTGAGTAAGC -3'
(R):5'- CACATGCGGAAGACTCTTCTTGTAG -3'

Posted On

2019-12-20