Mutagenetix > Incidental Mutation

Incidental Mutation 'R7908:Prorp'

610302

Institutional Source

Beutler Lab

Gene Symbol

Prorp

Ensembl Gene

ENSMUSG00000021023

Gene Name

protein only RNase P catalytic subunit

Synonyms

Mrpp3, 1110008L16Rik

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.513) question?

Stock #

R7908 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

55349422-55429276 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 55426250 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Asparagine at position 533 (K533N)

Ref Sequence

ENSEMBL: ENSMUSP00000021411 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021411] [ENSMUST00000163070] [ENSMUST00000183475] [ENSMUST00000183654] [ENSMUST00000184766] [ENSMUST00000184980]

AlphaFold

Q8JZY4

Predicted Effect

possibly damaging
Transcript: ENSMUST00000021411
AA Change: K533N

PolyPhen 2 Score 0.555 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000021411
Gene: ENSMUSG00000021023
AA Change: K533N

Domain	Start	End	E-Value	Type
Pfam:PRORP	339	575	4.8e-106	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000163070

SMART Domains

Protein: ENSMUSP00000124781
Gene: ENSMUSG00000021024

Domain	Start	End	E-Value	Type
Pfam:Proteasome	13	201	1.5e-56	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000183475
AA Change: K517N

PolyPhen 2 Score 0.842 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000139252
Gene: ENSMUSG00000021023
AA Change: K517N

Domain	Start	End	E-Value	Type
low complexity region	410	424	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000183654
AA Change: K164N

PolyPhen 2 Score 0.555 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000138821
Gene: ENSMUSG00000021023
AA Change: K164N

Domain	Start	End	E-Value	Type
Pfam:RNase_Zc3h12a	33	185	8e-7	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000184766
AA Change: K533N

PolyPhen 2 Score 0.555 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000139204
Gene: ENSMUSG00000021023
AA Change: K533N

Domain	Start	End	E-Value	Type
PDB:4G26\|A	153	581	1e-9	PDB

Predicted Effect

possibly damaging
Transcript: ENSMUST00000184980
AA Change: K220N

PolyPhen 2 Score 0.670 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000139123
Gene: ENSMUSG00000021023
AA Change: K220N

Domain	Start	End	E-Value	Type
low complexity region	113	127	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A4galt	A	G	15: 83,112,577 (GRCm39)	F69L	probably benign	Het
Acsf3	A	G	8: 123,512,562 (GRCm39)	M328V	probably damaging	Het
Adam10	T	G	9: 70,669,046 (GRCm39)	V454G	possibly damaging	Het
Adamts15	T	C	9: 30,813,522 (GRCm39)	D881G	probably benign	Het
Adamtsl1	T	C	4: 86,274,676 (GRCm39)	V1244A	probably benign	Het
Ankfn1	G	A	11: 89,296,360 (GRCm39)	P123L	probably damaging	Het
Aox1	T	C	1: 58,145,227 (GRCm39)	I1331T	possibly damaging	Het
Atg14	T	A	14: 47,806,050 (GRCm39)		probably benign	Het
Bmal1	A	T	7: 112,912,680 (GRCm39)	I579L	probably benign	Het
Btnl4	A	G	17: 34,692,161 (GRCm39)	M147T	possibly damaging	Het
Camk1g	T	C	1: 193,042,082 (GRCm39)	K56E	probably damaging	Het
Capn7	T	C	14: 31,088,202 (GRCm39)		probably null	Het
Cbln1	T	A	8: 88,198,724 (GRCm39)	T49S	probably benign	Het
Cc2d2a	T	C	5: 43,864,188 (GRCm39)	V763A	probably benign	Het
Cdc40	A	G	10: 40,724,042 (GRCm39)	Y249H	probably damaging	Het
Cfap61	T	A	2: 145,944,019 (GRCm39)	L762H	probably damaging	Het
Cfap68	T	A	9: 50,675,248 (GRCm39)	T153S	possibly damaging	Het
Cfap73	T	C	5: 120,768,123 (GRCm39)	T212A	probably benign	Het
Cfi	A	G	3: 129,642,233 (GRCm39)	E29G	probably benign	Het
Chmp6	A	T	11: 119,804,656 (GRCm39)		probably benign	Het
Clec14a	T	C	12: 58,314,465 (GRCm39)	T386A	possibly damaging	Het
Coq6	T	A	12: 84,417,940 (GRCm39)	L268H	probably damaging	Het
Cpt1a	T	C	19: 3,412,202 (GRCm39)	S225P	probably benign	Het
Dhx58	C	A	11: 100,586,130 (GRCm39)	L630F	probably damaging	Het
Dlg2	T	A	7: 91,549,981 (GRCm39)	V158E	probably damaging	Het
Fcgbpl1	A	T	7: 27,846,921 (GRCm39)	Y1168F	probably benign	Het
Foxd3	A	G	4: 99,545,576 (GRCm39)	T239A	probably benign	Het
Galnt6	T	C	15: 100,601,242 (GRCm39)	T346A	probably damaging	Het
Guca1b	C	G	17: 47,702,102 (GRCm39)	T185S	unknown	Het
H2-M5	T	C	17: 37,298,571 (GRCm39)	T292A	probably benign	Het
Hlx	T	C	1: 184,459,773 (GRCm39)	H455R	probably benign	Het
Hydin	A	G	8: 111,237,499 (GRCm39)	Y1924C	probably benign	Het
Ighg2b	C	T	12: 113,270,074 (GRCm39)	V315M		Het
Ildr2	A	G	1: 166,135,369 (GRCm39)	K374E	probably damaging	Het
Jmjd1c	T	C	10: 67,061,621 (GRCm39)	S1144P	probably benign	Het
Kcnj8	T	C	6: 142,511,755 (GRCm39)	D284G	probably benign	Het
Kri1	TTCCTCCTCCTCCTCCTCCTCCTCCTCCTC	TTCCTCCTCCTCCTCCTCCTCCTCCTC	9: 21,192,352 (GRCm39)		probably benign	Het
Lingo4	A	G	3: 94,309,541 (GRCm39)	T160A	probably benign	Het
Lmod3	G	T	6: 97,225,434 (GRCm39)	A129E	probably benign	Het
Lrrk2	T	C	15: 91,610,355 (GRCm39)	C696R	probably damaging	Het
Mc2r	A	G	18: 68,541,036 (GRCm39)	F86L	probably benign	Het
Mppe1	T	G	18: 67,362,055 (GRCm39)	K170T	probably benign	Het
Mtcl1	A	G	17: 66,678,325 (GRCm39)	I667T	possibly damaging	Het
Mtnr1a	A	T	8: 45,540,863 (GRCm39)	I275F	probably benign	Het
Myh2	A	G	11: 67,088,197 (GRCm39)	I1938V	probably benign	Het
Npsr1	A	T	9: 24,201,096 (GRCm39)	E160V	probably damaging	Het
Or13c7b	T	A	4: 43,821,086 (GRCm39)	I92F	probably damaging	Het
Or5ac23	C	T	16: 59,149,606 (GRCm39)	D89N	possibly damaging	Het
Or6c3	T	A	10: 129,308,867 (GRCm39)	I102N	probably damaging	Het
Ovch2	T	A	7: 107,388,326 (GRCm39)	Y418F	probably damaging	Het
Pak5	A	G	2: 135,958,479 (GRCm39)	L203S	probably benign	Het
Pcdh15	A	T	10: 74,479,414 (GRCm39)	E508D	probably benign	Het
Prl7a1	T	C	13: 27,826,433 (GRCm39)	M1V	probably null	Het
Prpsap2	G	T	11: 61,647,098 (GRCm39)	N14K	possibly damaging	Het
Rad54b	T	A	4: 11,595,868 (GRCm39)	V215E	probably null	Het
Ryr2	G	A	13: 11,807,634 (GRCm39)	T845I	probably benign	Het
Scgb2b3	G	A	7: 31,061,439 (GRCm39)	T20I	probably damaging	Het
Serpina1b	T	C	12: 103,694,566 (GRCm39)	I393V	possibly damaging	Het
Slc13a5	T	C	11: 72,149,890 (GRCm39)	M207V	probably benign	Het
Slc49a3	T	C	5: 108,592,363 (GRCm39)	I276V	probably benign	Het
Smg1	A	T	7: 117,785,357 (GRCm39)	L843M	unknown	Het
Sp100	T	C	1: 85,635,788 (GRCm39)	V531A	possibly damaging	Het
Srsf6	T	C	2: 162,775,760 (GRCm39)	S190P	unknown	Het
Stil	A	G	4: 114,889,896 (GRCm39)	K795E	possibly damaging	Het
Sugp2	A	G	8: 70,704,577 (GRCm39)	R705G	probably benign	Het
Tnfrsf11a	T	A	1: 105,737,099 (GRCm39)	C69S	probably damaging	Het
Trim30a	A	T	7: 104,070,656 (GRCm39)	N252K	probably benign	Het
Tshz1	T	A	18: 84,032,732 (GRCm39)	K559*	probably null	Het
Ttbk1	C	T	17: 46,789,864 (GRCm39)	R133H	probably damaging	Het
Vmn1r1	T	C	1: 181,984,915 (GRCm39)	Y250C	probably benign	Het
Vmn2r12	A	G	5: 109,234,307 (GRCm39)	L635P	probably damaging	Het
Vmn2r52	C	A	7: 9,896,877 (GRCm39)	V532L	probably benign	Het
Vwa5b1	A	T	4: 138,296,481 (GRCm39)	L1182*	probably null	Het
Washc2	A	G	6: 116,225,106 (GRCm39)	D818G	probably benign	Het
Xylb	T	G	9: 119,210,611 (GRCm39)	S365A	probably benign	Het
Zcchc8	T	C	5: 123,858,783 (GRCm39)		probably benign	Het
Zdbf2	T	C	1: 63,345,986 (GRCm39)	I1455T	possibly damaging	Het

Other mutations in Prorp

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01701:Prorp	APN	12	55,355,660 (GRCm39)	splice site	probably benign
IGL01932:Prorp	APN	12	55,350,910 (GRCm39)	missense	probably benign
IGL03030:Prorp	APN	12	55,351,429 (GRCm39)	missense	probably damaging	1.00
R0102:Prorp	UTSW	12	55,429,082 (GRCm39)	missense	probably benign	0.37
R0892:Prorp	UTSW	12	55,429,033 (GRCm39)	splice site	probably null
R1479:Prorp	UTSW	12	55,426,172 (GRCm39)	missense	probably damaging	1.00
R1510:Prorp	UTSW	12	55,350,997 (GRCm39)	missense	probably benign	0.21
R1845:Prorp	UTSW	12	55,351,117 (GRCm39)	missense	possibly damaging	0.58
R1992:Prorp	UTSW	12	55,384,991 (GRCm39)	missense	probably damaging	1.00
R2307:Prorp	UTSW	12	55,351,101 (GRCm39)	missense	probably damaging	1.00
R4080:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R4081:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R4082:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R5205:Prorp	UTSW	12	55,351,226 (GRCm39)	nonsense	probably null
R5590:Prorp	UTSW	12	55,351,257 (GRCm39)	missense	possibly damaging	0.89
R5940:Prorp	UTSW	12	55,351,659 (GRCm39)	missense	probably damaging	1.00
R5988:Prorp	UTSW	12	55,424,002 (GRCm39)	missense	probably damaging	1.00
R6147:Prorp	UTSW	12	55,426,093 (GRCm39)	missense	probably damaging	0.99
R7208:Prorp	UTSW	12	55,355,430 (GRCm39)	splice site	probably null
R7220:Prorp	UTSW	12	55,351,200 (GRCm39)	missense	possibly damaging	0.79
R7304:Prorp	UTSW	12	55,351,429 (GRCm39)	missense	probably damaging	1.00
R7316:Prorp	UTSW	12	55,351,429 (GRCm39)	missense	probably damaging	1.00
R7502:Prorp	UTSW	12	55,351,206 (GRCm39)	missense	probably damaging	1.00
R7967:Prorp	UTSW	12	55,350,979 (GRCm39)	missense	probably benign
R9030:Prorp	UTSW	12	55,426,192 (GRCm39)	missense	probably damaging	1.00
R9125:Prorp	UTSW	12	55,355,611 (GRCm39)	missense	possibly damaging	0.77
R9135:Prorp	UTSW	12	55,426,189 (GRCm39)	missense	probably damaging	1.00
R9136:Prorp	UTSW	12	55,350,727 (GRCm39)	missense	probably benign
R9321:Prorp	UTSW	12	55,351,434 (GRCm39)	missense	possibly damaging	0.94
R9456:Prorp	UTSW	12	55,385,015 (GRCm39)	missense	probably damaging	1.00
R9621:Prorp	UTSW	12	55,429,042 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AGTGTCTGACCGTGTTCTCC -3'
(R):5'- ACTTTTGCCCTGACAGATGCTG -3'

Sequencing Primer
(F):5'- TGCTGCAGCTCAGAGGATGATC -3'
(R):5'- CCTGACAGATGCTGTTTCTAGGAAC -3'

Posted On

2019-12-20