Incidental Mutation 'R0685:Cyp3a25'
ID 61113
Institutional Source Beutler Lab
Gene Symbol Cyp3a25
Ensembl Gene ENSMUSG00000029630
Gene Name cytochrome P450, family 3, subfamily a, polypeptide 25
Synonyms
MMRRC Submission 038870-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.096) question?
Stock # R0685 (G1)
Quality Score 159
Status Validated
Chromosome 5
Chromosomal Location 145914004-145946428 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 145935356 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Proline to Threonine at position 87 (P87T)
Ref Sequence ENSEMBL: ENSMUSP00000116077 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000068317] [ENSMUST00000138870] [ENSMUST00000145062]
AlphaFold O09158
Predicted Effect probably benign
Transcript: ENSMUST00000068317
AA Change: P87T

PolyPhen 2 Score 0.195 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000065585
Gene: ENSMUSG00000029630
AA Change: P87T

DomainStartEndE-ValueType
Pfam:p450 38 493 9.4e-129 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000138870
AA Change: P87T

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000116077
Gene: ENSMUSG00000029630
AA Change: P87T

DomainStartEndE-ValueType
Pfam:p450 38 126 2e-13 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000145062
AA Change: P87T

PolyPhen 2 Score 0.829 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000123615
Gene: ENSMUSG00000029630
AA Change: P87T

DomainStartEndE-ValueType
Pfam:p450 38 148 3.9e-21 PFAM
Meta Mutation Damage Score 0.3379 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.8%
  • 10x: 97.6%
  • 20x: 95.6%
Validation Efficiency 98% (89/91)
Allele List at MGI
Other mutations in this stock
Total: 80 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700020N01Rik A G 10: 21,469,337 (GRCm39) D17G probably damaging Het
Abi3bp A G 16: 56,353,316 (GRCm39) T82A possibly damaging Het
Adgre4 A C 17: 56,099,035 (GRCm39) E180D probably benign Het
Ankrd28 G A 14: 31,465,407 (GRCm39) probably benign Het
Aoc3 A G 11: 101,227,273 (GRCm39) D382G possibly damaging Het
Apob C A 12: 8,060,742 (GRCm39) R3075S probably benign Het
Aqr A G 2: 113,971,458 (GRCm39) F459S probably damaging Het
Bcr T C 10: 74,967,475 (GRCm39) W570R probably damaging Het
Bloc1s5 C T 13: 38,787,895 (GRCm39) R163K probably benign Het
Bod1 A T 11: 31,619,267 (GRCm39) N101K possibly damaging Het
Bysl A T 17: 47,913,396 (GRCm39) S296T probably benign Het
Chl1 G A 6: 103,685,503 (GRCm39) probably null Het
Clstn1 G A 4: 149,731,312 (GRCm39) A885T probably benign Het
Dync1h1 T C 12: 110,623,626 (GRCm39) V3633A probably damaging Het
Dynlt5 T C 4: 102,859,735 (GRCm39) Y96H probably damaging Het
Elp4 C A 2: 105,622,622 (GRCm39) C241F possibly damaging Het
Fat4 T A 3: 39,055,327 (GRCm39) F4182Y probably benign Het
Gabbr2 G A 4: 46,787,521 (GRCm39) H381Y possibly damaging Het
Gm10577 G T 4: 100,877,515 (GRCm39) probably benign Het
Gm9955 G T 18: 24,842,314 (GRCm39) probably benign Het
Gstm5 T A 3: 107,804,635 (GRCm39) I73N probably damaging Het
Gypa T A 8: 81,223,331 (GRCm39) probably benign Het
Hectd2 T A 19: 36,546,831 (GRCm39) V64D probably damaging Het
Igkv10-95 T A 6: 68,657,543 (GRCm39) Y20N probably benign Het
Il15 T C 8: 83,064,188 (GRCm39) probably benign Het
Iqca1 C A 1: 90,070,453 (GRCm39) G133V probably null Het
Kiz C A 2: 146,697,978 (GRCm39) probably benign Het
Lcmt2 C A 2: 120,969,721 (GRCm39) S234I probably benign Het
Lilra5 A G 7: 4,244,956 (GRCm39) probably benign Het
Lin37 T C 7: 30,255,299 (GRCm39) E187G probably damaging Het
Lrrc37 T C 11: 103,507,714 (GRCm39) probably benign Het
Mcmdc2 T A 1: 9,982,039 (GRCm39) probably null Het
Mctp1 T C 13: 76,973,918 (GRCm39) probably null Het
Mdp1 C A 14: 55,896,726 (GRCm39) G112* probably null Het
Mmp15 T C 8: 96,098,762 (GRCm39) Y530H possibly damaging Het
Mtss2 T C 8: 111,454,029 (GRCm39) probably null Het
Muc5ac T C 7: 141,361,446 (GRCm39) S1586P probably benign Het
Nap1l5 A T 6: 58,883,757 (GRCm39) C66S possibly damaging Het
Ninl G T 2: 150,781,775 (GRCm39) Q1237K possibly damaging Het
Or5p70 A T 7: 107,994,470 (GRCm39) T48S possibly damaging Het
Or9m1b T C 2: 87,836,762 (GRCm39) E111G probably damaging Het
Orc6 T G 8: 86,027,783 (GRCm39) S37R possibly damaging Het
Papss1 A C 3: 131,288,854 (GRCm39) N119H possibly damaging Het
Phf13 A T 4: 152,076,069 (GRCm39) F278I probably damaging Het
Pole2 C A 12: 69,258,187 (GRCm39) A239S probably damaging Het
Ppt2 T C 17: 34,845,546 (GRCm39) D75G probably damaging Het
Psd2 A G 18: 36,136,044 (GRCm39) D443G possibly damaging Het
Psen1 C A 12: 83,761,594 (GRCm39) S132* probably null Het
Psme4 A G 11: 30,828,415 (GRCm39) T1812A probably damaging Het
Rasgrf1 T C 9: 89,797,535 (GRCm39) probably benign Het
Reep3 A G 10: 66,857,518 (GRCm39) probably benign Het
Rexo4 A T 2: 26,848,586 (GRCm39) probably benign Het
Rnf6 A C 5: 146,148,468 (GRCm39) S183R probably damaging Het
Scai A T 2: 38,993,749 (GRCm39) M297K probably damaging Het
Scn9a A T 2: 66,313,843 (GRCm39) S1947R probably benign Het
Sema6c T C 3: 95,080,021 (GRCm39) C772R possibly damaging Het
Skint7 T C 4: 111,837,542 (GRCm39) S107P possibly damaging Het
Slc24a3 A G 2: 145,448,715 (GRCm39) N420D probably benign Het
Smc1b T C 15: 84,955,021 (GRCm39) D1077G possibly damaging Het
Smg7 G A 1: 152,742,399 (GRCm39) P82L probably damaging Het
Sp3 A C 2: 72,801,342 (GRCm39) F268V probably damaging Het
Srms T C 2: 180,854,426 (GRCm39) D47G probably benign Het
Ss18 A C 18: 14,784,238 (GRCm39) M150R probably damaging Het
Taf5 G A 19: 47,063,293 (GRCm39) R281Q probably benign Het
Tars1 T C 15: 11,385,259 (GRCm39) K644R probably benign Het
Tinag C A 9: 76,859,285 (GRCm39) W441L probably damaging Het
Tmtc1 T C 6: 148,312,738 (GRCm39) S244G probably benign Het
Tpr T C 1: 150,309,476 (GRCm39) V1670A possibly damaging Het
Trpv3 A G 11: 73,187,640 (GRCm39) probably benign Het
Uhrf1 G T 17: 56,617,742 (GRCm39) V155L probably damaging Het
Ush2a G A 1: 188,132,475 (GRCm39) C899Y probably damaging Het
Vmn2r115 G A 17: 23,578,249 (GRCm39) R574H probably benign Het
Vmn2r63 T C 7: 42,577,434 (GRCm39) D368G probably benign Het
Vps13a A G 19: 16,758,105 (GRCm39) V10A probably damaging Het
Wbp11 A G 6: 136,791,636 (GRCm39) probably benign Het
Zcwpw1 A G 5: 137,797,854 (GRCm39) D145G probably benign Het
Zfp607a G A 7: 27,577,901 (GRCm39) V324I probably damaging Het
Zfp618 A G 4: 63,052,011 (GRCm39) I931V probably benign Het
Zfp821 T C 8: 110,451,174 (GRCm39) V389A possibly damaging Het
Zfp976 T A 7: 42,263,141 (GRCm39) H232L probably damaging Het
Other mutations in Cyp3a25
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00091:Cyp3a25 APN 5 145,938,273 (GRCm39) nonsense probably null
IGL00430:Cyp3a25 APN 5 145,930,170 (GRCm39) missense probably damaging 1.00
IGL00803:Cyp3a25 APN 5 145,938,253 (GRCm39) splice site probably benign
IGL00928:Cyp3a25 APN 5 145,923,764 (GRCm39) missense possibly damaging 0.94
IGL01557:Cyp3a25 APN 5 145,921,711 (GRCm39) missense probably damaging 1.00
IGL01997:Cyp3a25 APN 5 145,931,766 (GRCm39) missense possibly damaging 0.92
IGL02140:Cyp3a25 APN 5 145,946,273 (GRCm39) splice site probably benign
IGL02267:Cyp3a25 APN 5 145,935,362 (GRCm39) missense possibly damaging 0.48
IGL02272:Cyp3a25 APN 5 145,930,075 (GRCm39) intron probably benign
IGL02327:Cyp3a25 APN 5 145,923,731 (GRCm39) missense possibly damaging 0.50
IGL02411:Cyp3a25 APN 5 145,938,257 (GRCm39) critical splice donor site probably benign
IGL02504:Cyp3a25 APN 5 145,930,141 (GRCm39) missense probably benign 0.03
IGL02653:Cyp3a25 APN 5 145,939,920 (GRCm39) missense possibly damaging 0.95
R0378:Cyp3a25 UTSW 5 145,923,652 (GRCm39) missense probably damaging 1.00
R0403:Cyp3a25 UTSW 5 145,935,323 (GRCm39) missense probably damaging 1.00
R0725:Cyp3a25 UTSW 5 145,931,746 (GRCm39) missense probably damaging 1.00
R0798:Cyp3a25 UTSW 5 145,928,343 (GRCm39) missense probably damaging 0.98
R1061:Cyp3a25 UTSW 5 145,923,643 (GRCm39) missense probably benign
R1519:Cyp3a25 UTSW 5 145,938,257 (GRCm39) critical splice donor site probably null
R1628:Cyp3a25 UTSW 5 145,938,273 (GRCm39) nonsense probably null
R1822:Cyp3a25 UTSW 5 145,921,763 (GRCm39) missense probably damaging 1.00
R1824:Cyp3a25 UTSW 5 145,921,763 (GRCm39) missense probably damaging 1.00
R1864:Cyp3a25 UTSW 5 145,931,739 (GRCm39) missense probably damaging 0.98
R2062:Cyp3a25 UTSW 5 145,923,779 (GRCm39) splice site probably benign
R2401:Cyp3a25 UTSW 5 145,923,778 (GRCm39) critical splice acceptor site probably null
R2516:Cyp3a25 UTSW 5 145,939,837 (GRCm39) splice site probably null
R3080:Cyp3a25 UTSW 5 145,935,341 (GRCm39) missense probably benign 0.33
R3236:Cyp3a25 UTSW 5 145,939,938 (GRCm39) splice site probably benign
R3694:Cyp3a25 UTSW 5 145,926,786 (GRCm39) splice site probably null
R3730:Cyp3a25 UTSW 5 145,939,891 (GRCm39) missense probably damaging 1.00
R4112:Cyp3a25 UTSW 5 145,939,841 (GRCm39) missense probably benign 0.18
R4258:Cyp3a25 UTSW 5 145,928,248 (GRCm39) missense probably damaging 1.00
R4651:Cyp3a25 UTSW 5 145,931,701 (GRCm39) missense probably benign 0.01
R4788:Cyp3a25 UTSW 5 145,921,892 (GRCm39) nonsense probably null
R4899:Cyp3a25 UTSW 5 145,914,481 (GRCm39) missense possibly damaging 0.59
R4926:Cyp3a25 UTSW 5 145,928,266 (GRCm39) missense probably damaging 1.00
R4952:Cyp3a25 UTSW 5 145,928,334 (GRCm39) missense probably benign 0.01
R5270:Cyp3a25 UTSW 5 145,918,312 (GRCm39) missense probably benign 0.36
R5595:Cyp3a25 UTSW 5 145,931,673 (GRCm39) critical splice donor site probably null
R5659:Cyp3a25 UTSW 5 145,928,356 (GRCm39) missense possibly damaging 0.69
R5787:Cyp3a25 UTSW 5 145,935,313 (GRCm39) missense probably benign 0.14
R6307:Cyp3a25 UTSW 5 145,931,766 (GRCm39) missense possibly damaging 0.92
R6380:Cyp3a25 UTSW 5 145,935,357 (GRCm39) missense probably damaging 0.99
R7055:Cyp3a25 UTSW 5 145,929,801 (GRCm39) missense probably benign 0.00
R7140:Cyp3a25 UTSW 5 145,939,855 (GRCm39) missense probably benign
R7189:Cyp3a25 UTSW 5 145,939,870 (GRCm39) missense probably benign 0.37
R7201:Cyp3a25 UTSW 5 145,939,868 (GRCm39) missense probably benign 0.00
R7201:Cyp3a25 UTSW 5 145,928,257 (GRCm39) missense probably benign 0.22
R7332:Cyp3a25 UTSW 5 145,929,817 (GRCm39) missense probably damaging 1.00
R7404:Cyp3a25 UTSW 5 145,923,635 (GRCm39) missense probably damaging 1.00
R7548:Cyp3a25 UTSW 5 145,923,735 (GRCm39) missense probably damaging 0.98
R7607:Cyp3a25 UTSW 5 145,921,791 (GRCm39) missense possibly damaging 0.87
R8022:Cyp3a25 UTSW 5 145,914,478 (GRCm39) missense probably benign 0.33
R8266:Cyp3a25 UTSW 5 145,929,796 (GRCm39) missense probably damaging 1.00
R8894:Cyp3a25 UTSW 5 145,931,670 (GRCm39) splice site probably benign
R9249:Cyp3a25 UTSW 5 145,928,356 (GRCm39) missense possibly damaging 0.69
R9588:Cyp3a25 UTSW 5 145,921,699 (GRCm39) missense probably benign
R9691:Cyp3a25 UTSW 5 145,931,732 (GRCm39) missense probably benign 0.41
R9694:Cyp3a25 UTSW 5 145,923,685 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- CCTGAGAATGGTGGTGGCTCTTTAC -3'
(R):5'- AGTGGCTTCTATGGTCAGAACTTGAAC -3'

Sequencing Primer
(F):5'- gtgtttctctctccctgctg -3'
(R):5'- CTATGGTCAGAACTTGAACTAGCAG -3'
Posted On 2013-07-30