Mutagenetix > Incidental Mutation

Incidental Mutation 'R8021:Secisbp2'

617390

Institutional Source

Beutler Lab

Gene Symbol

Secisbp2

Ensembl Gene

ENSMUSG00000035139

Gene Name

SECIS binding protein 2

Synonyms

SBP2, 2810012K13Rik, 2210413N07Rik

MMRRC Submission

067460-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.077) question?

Stock #

R8021 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

51805733-51838080 bp(+) (GRCm39)

Type of Mutation

makesense

DNA Base Change (assembly)

T to A at 51819664 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Stop codon to Arginine at position 415 (*415R)

Ref Sequence

ENSEMBL: ENSMUSP00000105671 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040117] [ENSMUST00000110044]

AlphaFold

Q3U1C4

Predicted Effect

probably benign
Transcript: ENSMUST00000040117

SMART Domains

Protein: ENSMUSP00000045740
Gene: ENSMUSG00000035139

Domain	Start	End	E-Value	Type
low complexity region	179	192	N/A	INTRINSIC
low complexity region	375	389	N/A	INTRINSIC
low complexity region	542	553	N/A	INTRINSIC
Pfam:Ribosomal_L7Ae	662	764	4.4e-23	PFAM
low complexity region	793	809	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000110044
AA Change: *415R

SMART Domains

Protein: ENSMUSP00000105671
Gene: ENSMUSG00000035139
AA Change: *415R

Domain	Start	End	E-Value	Type
low complexity region	179	192	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

97% (74/76)

MGI Phenotype

FUNCTION: The incorporation of selenocysteine into a protein requires the concerted action of an mRNA element called a sec insertion sequence (SECIS), a selenocysteine-specific translation elongation factor and a SECIS binding protein. With these elements in place, a UGA codon can be decoded as selenocysteine. The gene described in this record encodes a nuclear protein that functions as a SECIS binding protein. Mutations in a similar gene in human have been associated with a reduction in activity of a specific thyroxine deiodinase, a selenocysteine-containing enzyme, and abnormal thyroid hormone metabolism. Alternate splicing results in multiple transcript variants. [provided by RefSeq, May 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit complete preweaning lethality while heterozygotes exhibit reduced serum selenium levels. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1810010H24Rik	A	G	11: 106,916,753 (GRCm39)	I12V	unknown	Het
A630010A05Rik	C	T	16: 14,407,110 (GRCm39)	T13I		Het
Acsm5	A	G	7: 119,141,616 (GRCm39)	E537G	possibly damaging	Het
Adam25	C	A	8: 41,207,796 (GRCm39)	A354E	probably damaging	Het
Adamts3	T	C	5: 89,831,043 (GRCm39)	K1004E	possibly damaging	Het
Ap3d1	C	A	10: 80,550,135 (GRCm39)	V699L	probably benign	Het
Arel1	T	G	12: 84,981,732 (GRCm39)	H216P	possibly damaging	Het
Armc12	T	A	17: 28,749,879 (GRCm39)	F8I	probably benign	Het
Armh3	C	T	19: 45,945,180 (GRCm39)		probably null	Het
Ascc3	T	A	10: 50,607,744 (GRCm39)	M1416K	probably benign	Het
Catsperb	A	C	12: 101,554,322 (GRCm39)	N672T	probably benign	Het
Ccdc30	T	C	4: 119,209,876 (GRCm39)	H291R	probably benign	Het
Cd33	A	G	7: 43,178,262 (GRCm39)	V371A	unknown	Het
Cpt1b	A	T	15: 89,305,629 (GRCm39)	M362K	probably benign	Het
Dusp5	T	A	19: 53,517,929 (GRCm39)	S61T	probably benign	Het
Eogt	T	G	6: 97,111,291 (GRCm39)	D190A	probably damaging	Het
Fat3	T	A	9: 15,910,405 (GRCm39)	I1866F	probably damaging	Het
Fer1l4	T	A	2: 155,864,511 (GRCm39)	I1668F	probably damaging	Het
Foxn3	A	T	12: 99,355,161 (GRCm39)	M1K	probably null	Het
Frs3	T	A	17: 48,014,039 (GRCm39)	V244E	probably damaging	Het
Grik1	C	T	16: 87,711,110 (GRCm39)	V832I		Het
Gtf2ird2	T	A	5: 134,232,175 (GRCm39)	V242E	probably benign	Het
Gtpbp2	C	T	17: 46,475,195 (GRCm39)	R97C	possibly damaging	Het
Habp2	T	A	19: 56,302,485 (GRCm39)	V263E	probably benign	Het
Iars2	T	A	1: 185,054,654 (GRCm39)	I337L	probably benign	Het
Ifi204	T	C	1: 173,586,919 (GRCm39)		probably benign	Het
Itih2	T	C	2: 10,110,463 (GRCm39)	T543A	probably benign	Het
Kdm2b	A	G	5: 123,070,982 (GRCm39)	S372P	probably damaging	Het
Kit	T	A	5: 75,776,151 (GRCm39)	V311E	possibly damaging	Het
Kmt2c	C	G	5: 25,492,117 (GRCm39)	V4230L	possibly damaging	Het
Lao1	T	C	4: 118,825,674 (GRCm39)	I498T	probably damaging	Het
Lrp1	G	T	10: 127,384,215 (GRCm39)	D3641E	possibly damaging	Het
Mapk8ip1	A	T	2: 92,216,760 (GRCm39)	S477T	possibly damaging	Het
Mast3	C	T	8: 71,240,896 (GRCm39)	G218S	probably benign	Het
Mical1	T	C	10: 41,358,720 (GRCm39)	V546A	probably damaging	Het
Nck2	T	C	1: 43,593,420 (GRCm39)	V209A	probably benign	Het
Ndufs4	A	G	13: 114,444,351 (GRCm39)		probably null	Het
Nek3	C	T	8: 22,647,206 (GRCm39)	V139M	probably damaging	Het
Or10v5	T	C	19: 11,806,256 (GRCm39)	I45V	probably benign	Het
Or5ak24	A	T	2: 85,260,996 (GRCm39)	M59K	probably damaging	Het
Or7e171-ps1	A	C	9: 19,853,375 (GRCm39)	Y120*	probably null	Het
Or8b9	T	A	9: 37,766,592 (GRCm39)	H159Q	probably damaging	Het
Otog	A	T	7: 45,916,766 (GRCm39)	N901I	probably damaging	Het
Pclo	A	C	5: 14,589,798 (GRCm39)	Q699H	unknown	Het
Pcnx1	C	T	12: 81,965,593 (GRCm39)	R59*	probably null	Het
Pde12	A	T	14: 26,386,854 (GRCm39)	Y551*	probably null	Het
Pigg	A	G	5: 108,467,805 (GRCm39)	D268G	probably damaging	Het
Ppp1r21	A	G	17: 88,856,935 (GRCm39)	D130G	probably benign	Het
Psip1	T	C	4: 83,378,192 (GRCm39)	T435A	possibly damaging	Het
Rad54l2	T	C	9: 106,596,840 (GRCm39)	S189G	probably benign	Het
Rgs14	T	C	13: 55,531,569 (GRCm39)	C498R	probably damaging	Het
Ripply3	C	A	16: 94,129,369 (GRCm39)	A5E	probably benign	Het
Rps6ka4	T	C	19: 6,807,777 (GRCm39)	D676G	probably benign	Het
Rsbn1	T	C	3: 103,835,898 (GRCm39)	L312S	possibly damaging	Het
Sephs1	T	A	2: 4,911,434 (GRCm39)	F336Y	probably benign	Het
Setdb2	A	T	14: 59,660,833 (GRCm39)	Y103*	probably null	Het
Slit2	T	A	5: 48,459,834 (GRCm39)	C1371*	probably null	Het
Spata31e4	A	G	13: 50,855,130 (GRCm39)	N256S	possibly damaging	Het
Stab2	C	T	10: 86,741,403 (GRCm39)	A1239T	possibly damaging	Het
Taf4b	T	A	18: 14,937,581 (GRCm39)	V218E	probably damaging	Het
Tars2	T	C	3: 95,654,826 (GRCm39)	N393S	probably benign	Het
Tbc1d30	A	G	10: 121,103,448 (GRCm39)	M528T	probably benign	Het
Tchp	A	G	5: 114,856,478 (GRCm39)	E363G	probably damaging	Het
Tec	T	A	5: 72,914,812 (GRCm39)	N568I	probably benign	Het
Ticam1	A	G	17: 56,577,089 (GRCm39)	S669P	unknown	Het
Tnk1	A	G	11: 69,745,810 (GRCm39)	S372P	probably benign	Het
Tnpo2	G	A	8: 85,781,835 (GRCm39)	A847T	probably damaging	Het
Tsc1	A	T	2: 28,576,901 (GRCm39)	I1068F	possibly damaging	Het
Ttc14	T	A	3: 33,863,270 (GRCm39)	Y559*	probably null	Het
Ttc41	C	A	10: 86,569,578 (GRCm39)	T652N	probably benign	Het
Tut1	T	A	19: 8,932,873 (GRCm39)	S69T	probably benign	Het
Uck1	T	C	2: 32,149,929 (GRCm39)	S40G	probably benign	Het
Vmn2r76	G	A	7: 85,874,958 (GRCm39)	T673I	probably damaging	Het
Vps13d	G	T	4: 144,875,245 (GRCm39)	P1760H		Het
Zbp1	T	C	2: 173,051,003 (GRCm39)	N289S	possibly damaging	Het
Zc3hav1l	C	A	6: 38,274,882 (GRCm39)		probably benign	Het
Zzef1	A	T	11: 72,714,242 (GRCm39)	D244V	probably damaging	Het

Other mutations in Secisbp2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01149:Secisbp2	APN	13	51,830,491 (GRCm39)	critical splice donor site	probably null
IGL01316:Secisbp2	APN	13	51,808,552 (GRCm39)	missense	probably benign	0.06
IGL02576:Secisbp2	APN	13	51,824,894 (GRCm39)	missense	possibly damaging	0.80
IGL02630:Secisbp2	APN	13	51,832,942 (GRCm39)	missense	possibly damaging	0.63
IGL02645:Secisbp2	APN	13	51,836,496 (GRCm39)	missense	probably damaging	1.00
IGL03107:Secisbp2	APN	13	51,806,793 (GRCm39)	critical splice donor site	probably null
R0208:Secisbp2	UTSW	13	51,833,881 (GRCm39)	missense	probably benign	0.26
R0453:Secisbp2	UTSW	13	51,837,361 (GRCm39)	missense	possibly damaging	0.91
R1220:Secisbp2	UTSW	13	51,810,941 (GRCm39)	missense	probably damaging	1.00
R1278:Secisbp2	UTSW	13	51,808,546 (GRCm39)	missense	probably damaging	1.00
R1439:Secisbp2	UTSW	13	51,833,759 (GRCm39)	splice site	probably benign
R1514:Secisbp2	UTSW	13	51,836,131 (GRCm39)	missense	possibly damaging	0.83
R1568:Secisbp2	UTSW	13	51,827,143 (GRCm39)	missense	possibly damaging	0.73
R1724:Secisbp2	UTSW	13	51,824,882 (GRCm39)	missense	probably benign
R2851:Secisbp2	UTSW	13	51,808,671 (GRCm39)	splice site	probably null
R2967:Secisbp2	UTSW	13	51,824,915 (GRCm39)	missense	probably benign	0.00
R3156:Secisbp2	UTSW	13	51,816,711 (GRCm39)	missense	probably benign	0.06
R4393:Secisbp2	UTSW	13	51,808,502 (GRCm39)	missense	probably damaging	1.00
R4719:Secisbp2	UTSW	13	51,806,768 (GRCm39)	missense	possibly damaging	0.96
R4953:Secisbp2	UTSW	13	51,836,063 (GRCm39)	missense	probably damaging	1.00
R5183:Secisbp2	UTSW	13	51,819,460 (GRCm39)	missense	probably benign	0.14
R5432:Secisbp2	UTSW	13	51,828,002 (GRCm39)	small deletion	probably benign
R5696:Secisbp2	UTSW	13	51,833,857 (GRCm39)	missense	probably damaging	1.00
R6007:Secisbp2	UTSW	13	51,819,395 (GRCm39)	missense	probably damaging	0.99
R6066:Secisbp2	UTSW	13	51,831,258 (GRCm39)	missense	probably benign	0.00
R6076:Secisbp2	UTSW	13	51,833,813 (GRCm39)	missense	probably damaging	0.98
R6164:Secisbp2	UTSW	13	51,833,896 (GRCm39)	missense	probably damaging	1.00
R6346:Secisbp2	UTSW	13	51,833,923 (GRCm39)	missense	probably damaging	0.99
R6367:Secisbp2	UTSW	13	51,836,177 (GRCm39)	missense	probably damaging	1.00
R6790:Secisbp2	UTSW	13	51,824,939 (GRCm39)	missense	probably benign	0.09
R6888:Secisbp2	UTSW	13	51,833,977 (GRCm39)	missense	probably benign	0.16
R7095:Secisbp2	UTSW	13	51,831,290 (GRCm39)	missense	probably benign	0.01
R7104:Secisbp2	UTSW	13	51,810,943 (GRCm39)	nonsense	probably null
R7261:Secisbp2	UTSW	13	51,836,498 (GRCm39)	missense	probably damaging	1.00
R7717:Secisbp2	UTSW	13	51,827,134 (GRCm39)	missense	probably benign	0.00
R7986:Secisbp2	UTSW	13	51,819,395 (GRCm39)	missense	probably damaging	0.99
R8496:Secisbp2	UTSW	13	51,819,383 (GRCm39)	missense	probably damaging	1.00
R8755:Secisbp2	UTSW	13	51,833,869 (GRCm39)	missense	possibly damaging	0.92
R8757:Secisbp2	UTSW	13	51,833,869 (GRCm39)	missense	possibly damaging	0.92
R8758:Secisbp2	UTSW	13	51,833,869 (GRCm39)	missense	possibly damaging	0.92
R8759:Secisbp2	UTSW	13	51,833,869 (GRCm39)	missense	possibly damaging	0.92
R8833:Secisbp2	UTSW	13	51,819,352 (GRCm39)	missense	probably benign	0.01
R8878:Secisbp2	UTSW	13	51,837,404 (GRCm39)	missense	probably benign	0.13
R9153:Secisbp2	UTSW	13	51,833,855 (GRCm39)	missense	possibly damaging	0.92
R9295:Secisbp2	UTSW	13	51,808,483 (GRCm39)	missense	probably damaging	1.00
R9528:Secisbp2	UTSW	13	51,810,979 (GRCm39)	missense	possibly damaging	0.57
R9562:Secisbp2	UTSW	13	51,837,320 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GAAAAGCGTGTTTATCCTGCTCC -3'
(R):5'- GCAGATCCATACAGTCATCATGG -3'

Sequencing Primer
(F):5'- CTGCTCCAAAGGTATGCGTCAAG -3'
(R):5'- CATCATGGAAGCATGCCTTG -3'

Posted On

2020-01-23