Mutagenetix > Incidental Mutation

Incidental Mutation 'R8022:Slc45a1'

617436

Institutional Source

Beutler Lab

Gene Symbol

Slc45a1

Ensembl Gene

ENSMUSG00000039838

Gene Name

solute carrier family 45, member 1

Synonyms

Dnb5

MMRRC Submission

067461-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.138) question?

Stock #

R8022 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

150628572-150652174 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 150638309 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Serine at position 373 (G373S)

Ref Sequence

ENSEMBL: ENSMUSP00000036774 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037827] [ENSMUST00000117997]

AlphaFold

Q8BIV7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000037827
AA Change: G373S

PolyPhen 2 Score 0.708 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000036774
Gene: ENSMUSG00000039838
AA Change: G373S

Domain	Start	End	E-Value	Type
low complexity region	58	69	N/A	INTRINSIC
Pfam:MFS_2	86	310	7.3e-11	PFAM
Pfam:MFS_1	92	356	1.4e-12	PFAM
transmembrane domain	529	551	N/A	INTRINSIC
transmembrane domain	575	597	N/A	INTRINSIC
transmembrane domain	604	626	N/A	INTRINSIC
transmembrane domain	631	653	N/A	INTRINSIC
transmembrane domain	680	702	N/A	INTRINSIC
transmembrane domain	712	734	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000117997
AA Change: G373S

PolyPhen 2 Score 0.708 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000112737
Gene: ENSMUSG00000039838
AA Change: G373S

Domain	Start	End	E-Value	Type
low complexity region	58	69	N/A	INTRINSIC
Pfam:MFS_2	87	307	1.6e-12	PFAM
Pfam:MFS_1	92	362	2.4e-12	PFAM
transmembrane domain	529	551	N/A	INTRINSIC
transmembrane domain	575	597	N/A	INTRINSIC
transmembrane domain	604	626	N/A	INTRINSIC
transmembrane domain	631	653	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was isolated initially from a region on chromosome 1p that is frequently deleted in human neuroblastoma, although no causal relationship has since been demonstrated. The encoded protein belongs to the glycoside-pentoside-hexuronide cation symporter transporter family and may play a role in glucose uptake. [provided by RefSeq, Mar 2014]

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acacb	A	T	5: 114,223,854	T1386S	probably benign	Het
AI661453	T	G	17: 47,466,236	S296A	unknown	Het
Ambp	G	T	4: 63,144,197	N268K	probably damaging	Het
Ankrd11	T	C	8: 122,887,593	K2503E	probably damaging	Het
Ap1g1	C	A	8: 109,832,735	R221S	possibly damaging	Het
Ap5z1	T	C	5: 142,470,149		probably null	Het
Aspa	A	C	11: 73,322,206	N103K	probably benign	Het
BC049730	T	A	7: 24,714,174	I205N	possibly damaging	Het
Bend7	G	A	2: 4,752,779	V211I	probably benign	Het
Bsn	A	G	9: 108,114,404	M1383T	probably benign	Het
Cad	G	T	5: 31,068,806	V1117F	probably damaging	Het
Cdh2	A	G	18: 16,590,301	L856S	probably damaging	Het
Cdh7	T	A	1: 110,061,108	S247T	probably benign	Het
Ces1b	A	G	8: 93,069,315		probably null	Het
Chd7	T	A	4: 8,751,605	V34E	unknown	Het
Clca3a2	A	T	3: 144,805,766	F623I	probably damaging	Het
Cope	T	G	8: 70,312,803	M217R	probably benign	Het
Crim1	T	A	17: 78,315,555	I394N	possibly damaging	Het
Crnkl1	A	T	2: 145,918,566	I644N	probably damaging	Het
Cry1	G	A	10: 85,146,402	A360V	probably damaging	Het
Ctcfl	A	T	2: 173,118,766	V8D	probably benign	Het
Cyp2d34	G	A	15: 82,616,114	Q475*	probably null	Het
Cyp39a1	T	C	17: 43,746,577	Y436H	probably damaging	Het
Cyp3a25	T	A	5: 145,977,668	Q484L	probably benign	Het
Dnah1	A	G	14: 31,265,014	F3607S	probably damaging	Het
Dnali1	T	A	4: 125,065,530	K23N	possibly damaging	Het
Ecel1	T	C	1: 87,153,330	I313V	probably benign	Het
Ehhadh	C	A	16: 21,777,820	A53S	probably benign	Het
Epcam	T	C	17: 87,646,308	S277P	probably benign	Het
Fbxo10	T	C	4: 45,062,062	I155V	possibly damaging	Het
Fgd6	A	T	10: 94,044,344	K353N	possibly damaging	Het
Glce	A	T	9: 62,060,591	M426K	probably benign	Het
Glmp	A	T	3: 88,326,520	N228I	probably damaging	Het
Gm4787	C	A	12: 81,377,720	V555F	possibly damaging	Het
Gm5114	T	A	7: 39,409,376	H273L	probably benign	Het
Gzmg	T	A	14: 56,157,446	T122S	probably benign	Het
Hace1	T	C	10: 45,700,970	V820A	probably damaging	Het
Igf2r	T	A	17: 12,718,795	D535V	probably damaging	Het
Kcnd3	A	G	3: 105,458,873	M20V	probably benign	Het
Kcnn3	T	G	3: 89,609,703	I473S	possibly damaging	Het
Klhl35	T	A	7: 99,473,239	F94Y	unknown	Het
Kmt2c	C	T	5: 25,281,680	V4712I	possibly damaging	Het
Lepr	A	G	4: 101,782,557	E740G	probably benign	Het
Lmod3	T	C	6: 97,248,299	D187G	probably benign	Het
Lsm3	C	T	6: 91,519,561	H49Y	probably benign	Het
Magi1	T	C	6: 93,697,365	S962G	probably damaging	Het
Man2b1	G	A	8: 85,095,613	R782Q	probably damaging	Het
Mical2	A	T	7: 112,303,767	K148N	probably damaging	Het
Nbeal1	C	T	1: 60,260,272	Q1256*	probably null	Het
Ncam1	G	T	9: 49,564,892	A299D	possibly damaging	Het
Ncapg	A	G	5: 45,681,794	D512G	probably damaging	Het
Nkiras2	A	G	11: 100,624,287	N28D	probably benign	Het
Nprl2	A	C	9: 107,543,061	K53T	probably damaging	Het
Nr4a3	T	A	4: 48,051,510	I88N	probably damaging	Het
Oas3	A	G	5: 120,756,966	I986T	possibly damaging	Het
Olfr809	A	T	10: 129,776,785	L305F	possibly damaging	Het
Pcsk1	A	T	13: 75,099,293	Y187F	possibly damaging	Het
Pgc	A	G	17: 47,728,776	T32A	probably benign	Het
Ranbp2	A	C	10: 58,485,861	D2660A	possibly damaging	Het
Retreg1	A	G	15: 25,843,479	R46G		Het
Rrbp1	C	A	2: 143,956,792	K1100N	probably benign	Het
Rsph10b	A	T	5: 143,967,232	T676S	probably benign	Het
Setdb1	A	T	3: 95,338,599	F672I	probably damaging	Het
Setdb1	T	A	3: 95,347,085	D195V	probably damaging	Het
Slc12a8	A	G	16: 33,625,086	E450G	probably benign	Het
Slc1a7	G	A	4: 108,012,276	V513M	probably benign	Het
Slc25a12	A	T	2: 71,275,189	V667E	unknown	Het
Slc39a3	T	C	10: 81,031,277	T212A	probably benign	Het
Snx11	G	A	11: 96,772,854	T53M	probably damaging	Het
Snx33	A	G	9: 56,925,340	F482L	possibly damaging	Het
Srebf2	C	T	15: 82,178,765	R468C	probably damaging	Het
Stk32a	C	T	18: 43,315,101	Q382*	probably null	Het
Sun3	C	A	11: 9,023,376	S167I	probably damaging	Het
Sycp2	A	G	2: 178,355,062	L1116P	probably damaging	Het
Thbs4	T	G	13: 92,752,447	T913P	probably damaging	Het
Trav8d-1	C	T	14: 52,778,827	Q57*	probably null	Het
Trio	C	G	15: 27,749,866	V2250L	probably benign	Het
Unc119b	A	T	5: 115,127,043	I204N	probably damaging	Het
Usp4	A	G	9: 108,378,471	E576G	probably damaging	Het
Uvssa	T	A	5: 33,409,504	L515Q	probably damaging	Het
Xkr8	T	C	4: 132,732,338	Y43C	probably damaging	Het
Xpo6	G	A	7: 126,169,254	L94F	probably benign	Het
Zbtb11	A	G	16: 56,006,020	K804R	probably damaging	Het
Zfp616	A	G	11: 74,084,068	R479G	probably benign	Het
Zfp661	T	C	2: 127,577,924	T99A	probably benign	Het
Zfp839	A	T	12: 110,855,098	Q115H	probably damaging	Het
Zyg11a	C	T	4: 108,189,568		probably null	Het

Other mutations in Slc45a1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01796:Slc45a1	APN	4	150643969	missense	probably damaging	1.00
IGL02009:Slc45a1	APN	4	150637990	missense	probably damaging	1.00
IGL02251:Slc45a1	APN	4	150638719	splice site	probably benign
IGL02752:Slc45a1	APN	4	150638021	missense	probably benign	0.01
IGL02881:Slc45a1	APN	4	150638530	missense	probably benign	0.36
PIT4508001:Slc45a1	UTSW	4	150638435	missense	probably benign	0.00
R0017:Slc45a1	UTSW	4	150629566	missense	possibly damaging	0.56
R0017:Slc45a1	UTSW	4	150629566	missense	possibly damaging	0.56
R0449:Slc45a1	UTSW	4	150643305	missense	probably damaging	1.00
R0756:Slc45a1	UTSW	4	150642597	frame shift	probably null
R1435:Slc45a1	UTSW	4	150644048	missense	probably damaging	1.00
R1837:Slc45a1	UTSW	4	150638459	missense	probably benign	0.00
R1943:Slc45a1	UTSW	4	150644277	missense	probably benign	0.02
R2186:Slc45a1	UTSW	4	150638251	missense	probably benign	0.01
R3766:Slc45a1	UTSW	4	150638060	missense	probably damaging	1.00
R4689:Slc45a1	UTSW	4	150638539	missense	probably benign	0.31
R4697:Slc45a1	UTSW	4	150638284	missense	probably damaging	1.00
R4709:Slc45a1	UTSW	4	150638240	missense	probably benign	0.04
R5253:Slc45a1	UTSW	4	150638270	missense	probably damaging	0.98
R5387:Slc45a1	UTSW	4	150643909	intron	probably benign
R5914:Slc45a1	UTSW	4	150629540	missense	possibly damaging	0.57
R6259:Slc45a1	UTSW	4	150638360	missense	possibly damaging	0.63
R6290:Slc45a1	UTSW	4	150642639	missense	probably damaging	1.00
R6961:Slc45a1	UTSW	4	150629653	missense	probably damaging	0.99
R6981:Slc45a1	UTSW	4	150638594	missense	possibly damaging	0.48
R7099:Slc45a1	UTSW	4	150629573	missense	probably benign	0.00
R7209:Slc45a1	UTSW	4	150635212	splice site	probably null
R7601:Slc45a1	UTSW	4	150629537	missense	possibly damaging	0.78
R7615:Slc45a1	UTSW	4	150638545	missense	probably benign	0.01
R7730:Slc45a1	UTSW	4	150630940	missense	probably damaging	1.00
R7750:Slc45a1	UTSW	4	150644041	missense	probably damaging	1.00
R8768:Slc45a1	UTSW	4	150629749	missense	probably damaging	0.98
R9006:Slc45a1	UTSW	4	150638274	missense	probably damaging	1.00
R9258:Slc45a1	UTSW	4	150638614	missense	possibly damaging	0.88
R9388:Slc45a1	UTSW	4	150642610	missense	probably damaging	1.00
R9768:Slc45a1	UTSW	4	150638525	missense	probably benign
X0026:Slc45a1	UTSW	4	150644050	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCTTAGCACATCTCCATCCGAG -3'
(R):5'- CTATGAAGAGCCCAAGCCTC -3'

Sequencing Primer
(F):5'- ATCCGAGCCCAAGGTGAG -3'
(R):5'- GAGCCCAAGCCTCCCATTG -3'

Posted On

2020-01-23