Incidental Mutation 'R8030:Rbfox2'
ID 617916
Institutional Source Beutler Lab
Gene Symbol Rbfox2
Ensembl Gene ENSMUSG00000033565
Gene Name RNA binding protein, fox-1 homolog (C. elegans) 2
Synonyms Rbm9, 2810460A15Rik, Fxh, Fbm2
Accession Numbers
Essential gene? Possibly essential (E-score: 0.580) question?
Stock # R8030 (G1)
Quality Score 225.009
Status Not validated
Chromosome 15
Chromosomal Location 76963190-77191204 bp(-) (GRCm39)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) A to G at 76969776 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000130739 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000048145] [ENSMUST00000111581] [ENSMUST00000166610] [ENSMUST00000171751] [ENSMUST00000227314] [ENSMUST00000227533] [ENSMUST00000227930] [ENSMUST00000228087] [ENSMUST00000228253]
AlphaFold Q8BP71
Predicted Effect probably benign
Transcript: ENSMUST00000048145
SMART Domains Protein: ENSMUSP00000048056
Gene: ENSMUSG00000033565

DomainStartEndE-ValueType
low complexity region 2 22 N/A INTRINSIC
low complexity region 91 107 N/A INTRINSIC
low complexity region 139 150 N/A INTRINSIC
low complexity region 156 178 N/A INTRINSIC
RRM 181 252 1.77e-24 SMART
Pfam:Fox-1_C 319 374 2.9e-18 PFAM
low complexity region 375 390 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000111581
SMART Domains Protein: ENSMUSP00000129372
Gene: ENSMUSG00000033565

DomainStartEndE-ValueType
low complexity region 23 39 N/A INTRINSIC
low complexity region 71 82 N/A INTRINSIC
low complexity region 88 110 N/A INTRINSIC
RRM 113 184 1.77e-24 SMART
Pfam:Fox-1_C 252 350 3.7e-43 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000166610
SMART Domains Protein: ENSMUSP00000130673
Gene: ENSMUSG00000033565

DomainStartEndE-ValueType
low complexity region 23 39 N/A INTRINSIC
low complexity region 71 82 N/A INTRINSIC
low complexity region 88 110 N/A INTRINSIC
RRM 113 184 1.77e-24 SMART
Pfam:Fox-1_C 255 353 6.2e-41 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000171751
SMART Domains Protein: ENSMUSP00000130739
Gene: ENSMUSG00000033565

DomainStartEndE-ValueType
low complexity region 2 22 N/A INTRINSIC
low complexity region 91 107 N/A INTRINSIC
low complexity region 139 150 N/A INTRINSIC
low complexity region 156 178 N/A INTRINSIC
RRM 181 252 1.77e-24 SMART
Pfam:Fox-1_C 324 421 7e-47 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000227314
Predicted Effect probably benign
Transcript: ENSMUST00000227533
Predicted Effect probably benign
Transcript: ENSMUST00000227930
Predicted Effect probably benign
Transcript: ENSMUST00000228087
Predicted Effect probably benign
Transcript: ENSMUST00000228253
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is one of several human genes similar to the C. elegans gene Fox-1. This gene encodes an RNA binding protein that is thought to be a key regulator of alternative exon splicing in the nervous system and other cell types. The protein binds to a conserved UGCAUG element found downstream of many alternatively spliced exons and promotes inclusion of the alternative exon in mature transcripts. The protein also interacts with the estrogen receptor 1 transcription factor and regulates estrogen receptor 1 transcriptional activity. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a conditional allele activated in the brain exhibit normal spontaneous and kainic acid-induced seizures. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 63 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700012B09Rik A G 9: 14,672,970 (GRCm39) S98P probably benign Het
Abca9 C T 11: 110,011,534 (GRCm39) V1170I probably benign Het
Acacb A G 5: 114,371,228 (GRCm39) T1786A probably damaging Het
Acmsd T C 1: 127,676,898 (GRCm39) I141T possibly damaging Het
Akr1c12 A G 13: 4,322,244 (GRCm39) V266A possibly damaging Het
Arhgef18 A T 8: 3,489,600 (GRCm39) I311F probably damaging Het
Armc2 T A 10: 41,842,738 (GRCm39) N355I possibly damaging Het
Armh1 T A 4: 117,087,184 (GRCm39) K160N probably benign Het
Asic1 A T 15: 99,592,722 (GRCm39) T236S possibly damaging Het
Avl9 T A 6: 56,718,407 (GRCm39) D424E probably damaging Het
Cbfa2t2 A T 2: 154,357,816 (GRCm39) Q197L probably damaging Het
Ccdc136 T C 6: 29,417,141 (GRCm39) V654A probably benign Het
Cd177 C T 7: 24,455,594 (GRCm39) W309* probably null Het
Cplane1 G T 15: 8,259,787 (GRCm39) G2383V probably damaging Het
Cracr2a A G 6: 127,588,386 (GRCm39) K182E probably damaging Het
Dpys T C 15: 39,691,486 (GRCm39) T279A possibly damaging Het
Dsc1 A T 18: 20,222,628 (GRCm39) S615T probably benign Het
Dsc2 C T 18: 20,165,331 (GRCm39) G881R possibly damaging Het
Efcab14 A G 4: 115,623,599 (GRCm39) Q390R probably benign Het
Eif4ebp2 G A 10: 61,270,825 (GRCm39) A68V probably damaging Het
Fam81a A G 9: 70,010,191 (GRCm39) S149P probably benign Het
Ffar4 A G 19: 38,095,839 (GRCm39) I193V possibly damaging Het
Flvcr2 T A 12: 85,845,312 (GRCm39) V377D probably damaging Het
Fscn1 C T 5: 142,946,756 (GRCm39) R185C possibly damaging Het
Gucy1b2 C T 14: 62,630,319 (GRCm39) S809N probably benign Het
H60b T A 10: 22,163,020 (GRCm39) N198K probably damaging Het
Helz2 A T 2: 180,879,689 (GRCm39) F643Y possibly damaging Het
Kash5 CGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTC CGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTC 7: 44,837,608 (GRCm39) probably benign Het
Kif28 A G 1: 179,526,629 (GRCm39) V846A probably benign Het
Kirrel1 C A 3: 87,005,082 (GRCm39) G89W probably damaging Het
Krt42 G C 11: 100,155,865 (GRCm39) R294G possibly damaging Het
Mb21d2 A G 16: 28,646,555 (GRCm39) F473S probably damaging Het
Mcrip2 G A 17: 26,083,306 (GRCm39) Q111* probably null Het
Msh5 A G 17: 35,248,724 (GRCm39) Y741H possibly damaging Het
Myo7b A G 18: 32,131,135 (GRCm39) I544T probably damaging Het
Nav1 T C 1: 135,464,977 (GRCm39) E276G probably damaging Het
Nr2f1 T C 13: 78,343,565 (GRCm39) N233S probably benign Het
Nrip2 A T 6: 128,383,484 (GRCm39) D124V possibly damaging Het
Or5al1 C T 2: 85,990,586 (GRCm39) V43I probably benign Het
Or8k16 T A 2: 85,520,063 (GRCm39) C97S probably damaging Het
Panx2 G T 15: 88,952,282 (GRCm39) A250S probably damaging Het
Pdc T C 1: 150,208,964 (GRCm39) L149P probably damaging Het
Pex5l T A 3: 33,008,568 (GRCm39) I445F possibly damaging Het
Pigc T C 1: 161,798,116 (GRCm39) F33L probably damaging Het
Pkp2 A T 16: 16,064,774 (GRCm39) M433L probably benign Het
Rd3l A G 12: 111,946,584 (GRCm39) L64P possibly damaging Het
Rnf220 A G 4: 117,135,025 (GRCm39) Y409H probably damaging Het
Rsf1 G GACGGCGGCC 7: 97,229,116 (GRCm39) probably benign Het
Sel1l2 T C 2: 140,082,938 (GRCm39) T567A probably damaging Het
Slc22a8 T C 19: 8,587,371 (GRCm39) I477T probably damaging Het
Sltm C T 9: 70,493,261 (GRCm39) R753* probably null Het
Specc1l T A 10: 75,084,389 (GRCm39) M687K probably damaging Het
Spock3 T G 8: 63,805,232 (GRCm39) C338G probably damaging Het
Ssh2 C A 11: 77,345,332 (GRCm39) Q1106K probably benign Het
Sycp2l A G 13: 41,326,146 (GRCm39) M251V not run Het
Tdrd5 C A 1: 156,098,165 (GRCm39) E711* probably null Het
Thop1 T C 10: 80,911,450 (GRCm39) M112T possibly damaging Het
Tln1 C T 4: 43,535,737 (GRCm39) probably null Het
Ttc28 A C 5: 111,433,922 (GRCm39) I2319L possibly damaging Het
Ttll11 A G 2: 35,792,685 (GRCm39) I386T probably damaging Het
Txndc8 T C 4: 57,984,178 (GRCm39) E151G probably damaging Het
Ubr1 T C 2: 120,764,855 (GRCm39) E533G probably damaging Het
Zscan4f A G 7: 11,135,290 (GRCm39) H232R probably benign Het
Other mutations in Rbfox2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00990:Rbfox2 APN 15 76,987,136 (GRCm39) missense probably damaging 1.00
R0026:Rbfox2 UTSW 15 76,968,357 (GRCm39) missense possibly damaging 0.66
R0130:Rbfox2 UTSW 15 76,976,057 (GRCm39) intron probably benign
R0446:Rbfox2 UTSW 15 76,983,455 (GRCm39) missense probably damaging 0.98
R0731:Rbfox2 UTSW 15 76,983,479 (GRCm39) missense probably benign 0.21
R3013:Rbfox2 UTSW 15 77,017,120 (GRCm39) missense probably damaging 1.00
R3715:Rbfox2 UTSW 15 76,983,451 (GRCm39) missense probably damaging 0.97
R4094:Rbfox2 UTSW 15 77,016,925 (GRCm39) missense probably damaging 0.99
R4543:Rbfox2 UTSW 15 77,190,568 (GRCm39) missense probably benign 0.01
R4799:Rbfox2 UTSW 15 76,976,018 (GRCm39) missense probably benign 0.28
R6194:Rbfox2 UTSW 15 76,968,357 (GRCm39) missense possibly damaging 0.66
R7316:Rbfox2 UTSW 15 77,016,929 (GRCm39) missense possibly damaging 0.92
R7501:Rbfox2 UTSW 15 76,989,834 (GRCm39) missense probably benign 0.36
R7687:Rbfox2 UTSW 15 77,190,694 (GRCm39) missense unknown
R8103:Rbfox2 UTSW 15 76,983,654 (GRCm39) missense probably damaging 1.00
R9093:Rbfox2 UTSW 15 77,190,658 (GRCm39) missense probably benign
RF027:Rbfox2 UTSW 15 77,016,973 (GRCm39) missense possibly damaging 0.94
Predicted Primers PCR Primer
(F):5'- ATTGTCACCATCAAGCCCTC -3'
(R):5'- TACTGCACTCAGGAACAGAGATAG -3'

Sequencing Primer
(F):5'- ATCAAGCCCTCCTTCCTACTG -3'
(R):5'- GATAGGAAAACTTCTTCCATCTGCC -3'
Posted On 2020-01-23