Mutagenetix > Incidental Mutation

Incidental Mutation 'R8038:Rtn4rl1'

618345

Institutional Source

Beutler Lab

Gene Symbol

Rtn4rl1

Ensembl Gene

ENSMUSG00000045287

Gene Name

reticulon 4 receptor-like 1

Synonyms

Ngr3, Ngrl2, Ngrh2

MMRRC Submission

067475-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.145) question?

Stock #

R8038 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

75084819-75158595 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to C at 75156707 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glutamine at position 380 (E380Q)

Ref Sequence

ENSEMBL: ENSMUSP00000099572 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102514]

AlphaFold

Q8K0S5

Predicted Effect

possibly damaging
Transcript: ENSMUST00000102514
AA Change: E380Q

PolyPhen 2 Score 0.814 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000099572
Gene: ENSMUSG00000045287
AA Change: E380Q

Domain	Start	End	E-Value	Type
LRRNT	24	58	2.74e-2	SMART
LRR	76	98	5.57e1	SMART
LRR	99	123	1.73e0	SMART
LRR	124	147	2.14e0	SMART
LRR_TYP	148	171	1.1e-2	SMART
LRR_TYP	172	195	6.88e-4	SMART
LRR	196	219	2.49e-1	SMART
LRR	220	243	5.72e0	SMART
LRRCT	255	305	8.21e-2	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (50/50)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene display fatty change in the liver, bile duct lesions in females and hepatocytes with enlarged vacuoles and nuclei in the male. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acaca	T	A	11: 84,106,730 (GRCm39)	M143K	probably damaging	Het
Accs	A	T	2: 93,673,262 (GRCm39)		probably null	Het
Alkbh5	T	C	11: 60,429,811 (GRCm39)	V188A	probably damaging	Het
Cacna1h	C	T	17: 25,594,865 (GRCm39)	V2098I	probably damaging	Het
Chuk	A	G	19: 44,067,416 (GRCm39)	Y580H	probably damaging	Het
Col7a1	A	G	9: 108,786,360 (GRCm39)	N530S	unknown	Het
Cops2	A	T	2: 125,674,206 (GRCm39)	H420Q	probably benign	Het
Ctcfl	A	T	2: 172,943,698 (GRCm39)	C551S	probably damaging	Het
Depdc5	T	C	5: 33,116,692 (GRCm39)		probably null	Het
Dnmt1	A	C	9: 20,852,860 (GRCm39)	V82G	probably damaging	Het
Fam90a1a	A	T	8: 22,453,455 (GRCm39)	N270I	possibly damaging	Het
Foxn4	T	C	5: 114,394,658 (GRCm39)	D423G	probably damaging	Het
Hoxa5	A	G	6: 52,181,309 (GRCm39)	S8P	probably damaging	Het
Ighe	A	T	12: 113,233,053 (GRCm39)	V456D		Het
Ighv1-52	A	G	12: 115,109,210 (GRCm39)	F83S	probably damaging	Het
Itga2	A	T	13: 114,990,291 (GRCm39)	N921K	probably damaging	Het
Kdm2b	T	C	5: 123,098,958 (GRCm39)		probably benign	Het
Llgl2	T	G	11: 115,741,929 (GRCm39)	M657R	probably benign	Het
Lrrcc1	T	A	3: 14,630,890 (GRCm39)	I1019K	possibly damaging	Het
Lrriq3	A	T	3: 154,869,638 (GRCm39)	D321V	probably benign	Het
Lsm10	T	C	4: 125,991,890 (GRCm39)	V82A	probably damaging	Het
Mettl3	A	G	14: 52,537,421 (GRCm39)	S154P	possibly damaging	Het
Naip2	T	C	13: 100,298,570 (GRCm39)	I489V	probably benign	Het
Nat8f5	T	A	6: 85,794,667 (GRCm39)	T98S	possibly damaging	Het
Or10w1	G	A	19: 13,632,719 (GRCm39)	V309M	possibly damaging	Het
Or4c113	A	T	2: 88,885,212 (GRCm39)	L186Q	probably damaging	Het
Or7e166	G	T	9: 19,624,976 (GRCm39)	M284I	possibly damaging	Het
Or8d6	T	A	9: 39,854,177 (GRCm39)	V207D	probably damaging	Het
Pira1	C	G	7: 3,740,319 (GRCm39)	A301P	probably damaging	Het
Pld5	T	C	1: 175,872,463 (GRCm39)	I225V	probably benign	Het
Ppfia1	C	A	7: 144,068,653 (GRCm39)	A414S	possibly damaging	Het
Ppib	T	C	9: 65,967,615 (GRCm39)	V23A	probably benign	Het
Rabggta	A	T	14: 55,956,387 (GRCm39)	S361T	probably benign	Het
Rap1gap2	T	C	11: 74,283,109 (GRCm39)	S664G	probably benign	Het
Recql5	A	G	11: 115,818,178 (GRCm39)	V285A	possibly damaging	Het
Scarb2	A	T	5: 92,599,307 (GRCm39)	S338T	probably damaging	Het
Skint4	T	G	4: 111,977,003 (GRCm39)		probably benign	Het
Slc13a5	T	C	11: 72,144,196 (GRCm39)	K294R	probably benign	Het
Spib	A	G	7: 44,179,310 (GRCm39)	F32S	probably benign	Het
Spint2	A	G	7: 28,959,554 (GRCm39)		probably benign	Het
Sycp2	A	T	2: 178,045,571 (GRCm39)	D16E	probably damaging	Het
Tab1	A	G	15: 80,044,471 (GRCm39)	T500A	probably benign	Het
Tecpr2	T	C	12: 110,902,854 (GRCm39)	F860L	probably benign	Het
Tg	A	G	15: 66,560,724 (GRCm39)	M1029V	probably benign	Het
Tmem126b	C	T	7: 90,118,830 (GRCm39)	V153I	probably benign	Het
Uba2	A	T	7: 33,847,022 (GRCm39)	Y440N	probably damaging	Het
Vwa2	A	G	19: 56,886,320 (GRCm39)	E129G	probably benign	Het
Wapl	A	G	14: 34,413,639 (GRCm39)	D167G	probably benign	Het
Zfp64	A	G	2: 168,741,932 (GRCm39)	F332S	probably damaging	Het
Zfp786	C	T	6: 47,798,188 (GRCm39)	R250H	probably benign	Het

Other mutations in Rtn4rl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01479:Rtn4rl1	APN	11	75,156,168 (GRCm39)	missense	probably damaging	1.00
IGL02161:Rtn4rl1	APN	11	75,156,666 (GRCm39)	missense	probably damaging	0.98
IGL02420:Rtn4rl1	APN	11	75,156,645 (GRCm39)	missense	probably damaging	0.98
IGL02641:Rtn4rl1	APN	11	75,156,650 (GRCm39)	missense	probably damaging	1.00
IGL02984:Rtn4rl1	UTSW	11	75,156,087 (GRCm39)	missense	probably benign	0.10
R0699:Rtn4rl1	UTSW	11	75,156,050 (GRCm39)	missense	probably benign	0.15
R0699:Rtn4rl1	UTSW	11	75,156,048 (GRCm39)	missense	possibly damaging	0.56
R1669:Rtn4rl1	UTSW	11	75,156,753 (GRCm39)	missense	probably benign
R1925:Rtn4rl1	UTSW	11	75,156,864 (GRCm39)	missense	probably benign	0.17
R2679:Rtn4rl1	UTSW	11	75,156,552 (GRCm39)	missense	probably benign	0.21
R4205:Rtn4rl1	UTSW	11	75,156,818 (GRCm39)	missense	probably damaging	1.00
R4205:Rtn4rl1	UTSW	11	75,156,809 (GRCm39)	missense	probably damaging	0.97
R6326:Rtn4rl1	UTSW	11	75,156,828 (GRCm39)	missense	possibly damaging	0.83
R6703:Rtn4rl1	UTSW	11	75,156,354 (GRCm39)	missense	probably benign	0.02
R7085:Rtn4rl1	UTSW	11	75,156,050 (GRCm39)	missense	probably benign	0.03
R7203:Rtn4rl1	UTSW	11	75,156,576 (GRCm39)	missense	possibly damaging	0.47
R7320:Rtn4rl1	UTSW	11	75,085,122 (GRCm39)	critical splice donor site	probably null
R7754:Rtn4rl1	UTSW	11	75,155,871 (GRCm39)	missense	probably benign
R8244:Rtn4rl1	UTSW	11	75,156,276 (GRCm39)	missense	probably damaging	1.00
R8306:Rtn4rl1	UTSW	11	75,156,147 (GRCm39)	missense	probably damaging	1.00
R8679:Rtn4rl1	UTSW	11	75,156,099 (GRCm39)	missense	probably damaging	0.99
R9240:Rtn4rl1	UTSW	11	75,156,082 (GRCm39)	missense	probably damaging	0.97
Z1186:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1187:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1188:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1189:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1190:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1191:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1192:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TGTCTCCTCACCAGATCAAGTC -3'
(R):5'- TTCCTTGCTGGACATGTGGC -3'

Sequencing Primer
(F):5'- CGCTTACCACCTCTGACAG -3'
(R):5'- TCCTCAGCGGAGAGTGACTG -3'

Posted On

2020-01-23