Incidental Mutation 'R8039:Chst10'
ID618364
Institutional Source Beutler Lab
Gene Symbol Chst10
Ensembl Gene ENSMUSG00000026080
Gene Namecarbohydrate sulfotransferase 10
SynonymsST, Hnk-1st
MMRRC Submission
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.277) question?
Stock #R8039 (G1)
Quality Score225.009
Status Not validated
Chromosome1
Chromosomal Location38863867-38898161 bp(-) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) T to A at 38866031 bp
ZygosityHeterozygous
Amino Acid Change Lysine to Stop codon at position 198 (K198*)
Ref Sequence ENSEMBL: ENSMUSP00000027249 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027249] [ENSMUST00000192948] [ENSMUST00000193441] [ENSMUST00000194361] [ENSMUST00000194657]
Predicted Effect probably null
Transcript: ENSMUST00000027249
AA Change: K198*
SMART Domains Protein: ENSMUSP00000027249
Gene: ENSMUSG00000026080
AA Change: K198*

DomainStartEndE-ValueType
transmembrane domain 23 45 N/A INTRINSIC
Pfam:Sulfotransfer_2 129 367 7.1e-54 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000192948
AA Change: K91*
SMART Domains Protein: ENSMUSP00000141470
Gene: ENSMUSG00000026080
AA Change: K91*

DomainStartEndE-ValueType
Pfam:Sulfotransfer_2 22 238 2.5e-45 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000193441
SMART Domains Protein: ENSMUSP00000142028
Gene: ENSMUSG00000026080

DomainStartEndE-ValueType
transmembrane domain 23 45 N/A INTRINSIC
Pfam:Sulfotransfer_2 129 196 2.1e-9 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000194361
AA Change: K194*
SMART Domains Protein: ENSMUSP00000141295
Gene: ENSMUSG00000026080
AA Change: K194*

DomainStartEndE-ValueType
signal peptide 1 36 N/A INTRINSIC
Pfam:Sulfotransfer_2 125 363 1.3e-51 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000194657
SMART Domains Protein: ENSMUSP00000141481
Gene: ENSMUSG00000026080

DomainStartEndE-ValueType
transmembrane domain 23 45 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.5%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This protein encoded by this gene transfers sulfate to the C-3 hydroxyl of terminal glucuronic acid of protein- and lipid-linked oligosaccharides. This protein was first identified as a sulfotransferase that acts on the human natural killer-1 (HNK-1) glycan; HNK-1 is a carbohydrate involved in neurodevelopment and synaptic plasticity.[provided by RefSeq, Feb 2011]
PHENOTYPE: Homozygous mutation of this gene results in altered synaptic transmission and long term potentiation. Mutant animals exhibit impaired spatial learning and long term memory deficits. Mice homozygous for a different knock-out allele exhibit reduced male and female fertility. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 86 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4932438A13Rik T A 3: 36,943,214 V1140E probably benign Het
Abca17 T C 17: 24,328,725 H225R probably damaging Het
Adgrb2 T A 4: 130,022,268 L1451Q probably damaging Het
Afdn T C 17: 13,899,141 L1713P probably damaging Het
Agr2 A T 12: 35,995,559 I15F probably benign Het
Agrn T C 4: 156,169,011 T1808A probably benign Het
Akap6 A G 12: 53,141,676 I1958V probably benign Het
Ankrd60 C A 2: 173,572,491 probably null Het
Anpep A G 7: 79,839,400 probably null Het
Apoa4 A T 9: 46,242,293 D64V possibly damaging Het
Arhgef26 C A 3: 62,339,930 T145N probably benign Het
Art1 A T 7: 102,106,845 Q81L probably benign Het
Astl A T 2: 127,343,983 S71C probably damaging Het
Atp2a1 A G 7: 126,448,805 I611T probably damaging Het
Cacna2d2 T A 9: 107,527,433 V1139D possibly damaging Het
Ckmt2 G A 13: 91,863,312 H60Y possibly damaging Het
Coq7 G C 7: 118,533,246 S2R possibly damaging Het
Cspp1 T A 1: 10,113,013 D814E probably benign Het
Cyp2c54 CCTCTTTCATAGCTCT CCTCT 19: 40,073,732 probably null Het
Daam2 C A 17: 49,464,538 G860V probably damaging Het
Ecm2 A T 13: 49,514,850 I10F probably benign Het
Epb41l1 A T 2: 156,506,412 D312V probably damaging Het
Epsti1 G A 14: 77,931,301 R126H probably damaging Het
Erc1 A T 6: 119,773,665 Y367* probably null Het
Erh T A 12: 80,637,578 R42W probably damaging Het
Fam124a C T 14: 62,605,876 Q278* probably null Het
Fam155a T C 8: 9,207,892 T419A probably benign Het
Fbxo3 T A 2: 104,054,941 L385Q probably damaging Het
Fbxo31 T A 8: 121,559,055 T219S probably damaging Het
Fstl5 T G 3: 76,648,418 V534G possibly damaging Het
Gatsl3 G T 11: 4,221,639 A288S probably damaging Het
Gbp2b A T 3: 142,618,164 I577F probably benign Het
Gbp8 A T 5: 105,050,917 L44* probably null Het
Gck C T 11: 5,910,301 A114T probably benign Het
Gm16486 T C 8: 70,710,906 V916A probably benign Het
Gtf2i A G 5: 134,255,834 V537A possibly damaging Het
Iqcm C A 8: 75,763,105 H400Q probably damaging Het
Itpr1 T C 6: 108,386,628 L737P probably damaging Het
Jakmip1 A G 5: 37,100,772 E254G probably damaging Het
Kif15 A T 9: 123,007,425 R1095W possibly damaging Het
Klhdc8a G A 1: 132,303,108 R237Q probably benign Het
Klhl38 T C 15: 58,322,862 E157G probably benign Het
Klrk1 T A 6: 129,612,823 N221I probably benign Het
Lhx8 A T 3: 154,306,939 H345Q probably damaging Het
Lims1 T A 10: 58,409,672 N174K probably benign Het
Madd T A 2: 91,167,061 Q754L probably benign Het
Mau2 T C 8: 70,019,790 D581G probably damaging Het
Miga1 A T 3: 152,276,756 I561N probably benign Het
Mmp1a TG TGG 9: 7,465,083 probably null Het
Mob3c T C 4: 115,831,687 V139A probably benign Het
Nadk G T 4: 155,577,067 D17Y probably benign Het
Ncapd2 C T 6: 125,181,026 V380I probably damaging Het
Nes G A 3: 87,977,008 R858K probably benign Het
Nphp3 T C 9: 104,031,963 S791P probably benign Het
Nup210 T C 6: 91,070,233 T496A probably benign Het
Ogfr GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG 2: 180,595,266 probably benign Het
Olfr1186 C T 2: 88,525,871 T96I probably benign Het
Olfr220 T A 1: 174,449,596 S324R unknown Het
Olfr914 T A 9: 38,607,389 M308K probably benign Het
Ovgp1 T A 3: 105,976,023 S105T probably benign Het
Pbld2 T A 10: 63,047,992 C79S probably damaging Het
Pik3cd T A 4: 149,659,866 M143L possibly damaging Het
Plat G T 8: 22,772,232 G91W probably damaging Het
Poln A G 5: 34,122,672 V282A probably benign Het
Ppp1r11 T C 17: 36,951,446 T21A probably damaging Het
Prpf8 T A 11: 75,502,542 I1664N possibly damaging Het
Prr29 C T 11: 106,376,912 A161V probably benign Het
Rasa3 T C 8: 13,588,931 D292G probably damaging Het
Rnf25 T C 1: 74,593,964 T411A probably damaging Het
Rraga C T 4: 86,575,980 T21I probably damaging Het
Setdb2 T A 14: 59,402,375 Y673F probably damaging Het
Sf3a1 C T 11: 4,167,787 T183I probably damaging Het
Shank3 A T 15: 89,505,439 H413L probably damaging Het
Slc30a5 A G 13: 100,813,681 probably null Het
Slc6a18 T C 13: 73,665,626 S523G probably benign Het
Spaca1 C T 4: 34,044,207 V96I probably damaging Het
Sycp2 C T 2: 178,374,585 A695T probably benign Het
Tnrc18 C A 5: 142,732,052 G2216C unknown Het
Trak2 T C 1: 58,946,288 N17S probably benign Het
Ttn T A 2: 76,878,432 N8792I unknown Het
Ttyh1 T C 7: 4,122,541 V64A probably benign Het
Usb1 T A 8: 95,333,413 S50R probably damaging Het
Ush2a T A 1: 188,957,373 I5044N probably damaging Het
Vmn1r84 A T 7: 12,362,008 F253I possibly damaging Het
Vmn2r99 T C 17: 19,380,040 I442T probably benign Het
Vsig1 C T X: 140,933,126 H232Y probably benign Het
Other mutations in Chst10
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01947:Chst10 APN 1 38865565 missense probably damaging 1.00
R0142:Chst10 UTSW 1 38871729 missense probably damaging 1.00
R0513:Chst10 UTSW 1 38865763 missense probably damaging 1.00
R1163:Chst10 UTSW 1 38871702 missense probably damaging 1.00
R1464:Chst10 UTSW 1 38865691 missense probably damaging 1.00
R1464:Chst10 UTSW 1 38865691 missense probably damaging 1.00
R2129:Chst10 UTSW 1 38865695 missense probably benign 0.41
R4163:Chst10 UTSW 1 38871823 missense probably benign 0.01
R4712:Chst10 UTSW 1 38865841 missense probably damaging 1.00
R5328:Chst10 UTSW 1 38895962 start gained probably benign
R5469:Chst10 UTSW 1 38865527 missense probably damaging 1.00
R6311:Chst10 UTSW 1 38868047 missense probably damaging 1.00
R6395:Chst10 UTSW 1 38871689 missense probably damaging 1.00
R7156:Chst10 UTSW 1 38874007 missense probably damaging 0.98
R7706:Chst10 UTSW 1 38866025 missense probably damaging 0.99
R7789:Chst10 UTSW 1 38884451 missense probably benign 0.03
R7941:Chst10 UTSW 1 38871691 missense probably damaging 1.00
R8252:Chst10 UTSW 1 38884352 missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- GCGCACAAAATCTTCAAACTGG -3'
(R):5'- TCAACCTCAGAGGCTTCCTG -3'

Sequencing Primer
(F):5'- TTCAAACTGGATCCCCCGGG -3'
(R):5'- AACCTCAGAGGCTTCCTGGTTTG -3'
Posted On2020-01-23