Mutagenetix > Incidental Mutation

Incidental Mutation 'R8043:Slc30a6'

618648

Institutional Source

Beutler Lab

Gene Symbol

Slc30a6

Ensembl Gene

ENSMUSG00000024069

Gene Name

solute carrier family 30 (zinc transporter), member 6

Synonyms

ZnT-6, ZnT6

MMRRC Submission

067480-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.355) question?

Stock #

R8043 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

74702603-74731216 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 74730018 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Alanine at position 303 (S303A)

Ref Sequence

ENSEMBL: ENSMUSP00000136503 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000024870] [ENSMUST00000052124] [ENSMUST00000179074]

AlphaFold

Q8BJM5

Predicted Effect

probably damaging
Transcript: ENSMUST00000024870
AA Change: S298A

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000024870
Gene: ENSMUSG00000024069
AA Change: S298A

Domain	Start	End	E-Value	Type
Pfam:Cation_efflux	34	336	6.9e-45	PFAM
low complexity region	371	392	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000052124

SMART Domains

Protein: ENSMUSP00000059637
Gene: ENSMUSG00000039193

Domain	Start	End	E-Value	Type
Pfam:CARD	1	87	1.4e-20	PFAM
Pfam:NACHT	163	314	1.3e-28	PFAM
SCOP:d1yrga_	734	1015	3e-20	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000179074
AA Change: S303A

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000136503
Gene: ENSMUSG00000024069
AA Change: S303A

Domain	Start	End	E-Value	Type
Pfam:Cation_efflux	34	260	5.7e-30	PFAM
low complexity region	376	397	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

98% (50/51)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of proteins that function as zinc transporters. This protein can regulate subcellular levels of zinc in the Golgi and vesicles. Expression of this gene is altered in the Alzheimer's disease brain plaques. [provided by RefSeq, Aug 2016]

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb9	T	C	5: 124,211,665 (GRCm39)	Y628C	probably damaging	Het
Alpk2	C	T	18: 65,482,901 (GRCm39)	C369Y	probably damaging	Het
Atl1	T	C	12: 70,005,989 (GRCm39)	Y432H	probably damaging	Het
Cacnb4	C	T	2: 52,355,663 (GRCm39)	V215M	probably damaging	Het
Cep170	C	T	1: 176,596,808 (GRCm39)	M516I	probably damaging	Het
Cep83	A	C	10: 94,573,804 (GRCm39)	N231T	probably damaging	Het
Cfap44	G	A	16: 44,234,054 (GRCm39)	G338D	probably benign	Het
Col6a6	A	T	9: 105,576,219 (GRCm39)	V2047E	probably damaging	Het
Coro1c	C	T	5: 114,003,820 (GRCm39)		silent	Het
Cplx4	A	T	18: 66,090,190 (GRCm39)		probably null	Het
Csf1r	G	C	18: 61,257,947 (GRCm39)	G639R	probably damaging	Het
Epha5	A	G	5: 84,381,513 (GRCm39)	V446A	probably benign	Het
Esam	T	C	9: 37,448,317 (GRCm39)	V252A	probably damaging	Het
F13b	T	G	1: 139,450,186 (GRCm39)	M616R	probably benign	Het
Fbxw21	T	C	9: 108,975,694 (GRCm39)	Y234C	probably benign	Het
Fshr	C	T	17: 89,293,818 (GRCm39)	E287K	probably benign	Het
Fstl4	T	C	11: 52,891,050 (GRCm39)	S63P	probably benign	Het
Glra1	G	A	11: 55,424,688 (GRCm39)	P174L	probably damaging	Het
Golga7	A	T	8: 23,746,731 (GRCm39)	C24S	possibly damaging	Het
Gpr3	G	A	4: 132,938,271 (GRCm39)	R134C	probably damaging	Het
Greb1	T	C	12: 16,761,790 (GRCm39)	E530G	probably damaging	Het
Hmgcs2	C	T	3: 98,198,444 (GRCm39)	R116C	probably damaging	Het
Kcnj9	C	A	1: 172,153,623 (GRCm39)	R167L	probably damaging	Het
Kcnq5	T	A	1: 21,549,644 (GRCm39)	Q361L	probably damaging	Het
Lrrc40	T	C	3: 157,769,397 (GRCm39)	S532P	possibly damaging	Het
Mob3a	A	T	10: 80,525,846 (GRCm39)	I155N	probably damaging	Het
Mpi	A	T	9: 57,457,881 (GRCm39)	L107Q	probably damaging	Het
Npffr2	G	A	5: 89,730,513 (GRCm39)	V148I	probably benign	Het
Nrp1	G	T	8: 129,158,504 (GRCm39)	V264L	probably benign	Het
Oas1a	T	C	5: 121,035,080 (GRCm39)	E360G	probably benign	Het
Or4k15c	A	T	14: 50,321,367 (GRCm39)	I257N	possibly damaging	Het
Or52e8	A	T	7: 104,625,080 (GRCm39)	Y41*	probably null	Het
Or5b96	A	C	19: 12,867,095 (GRCm39)	V282G	probably damaging	Het
Pcdha2	A	G	18: 37,072,579 (GRCm39)	D70G	probably benign	Het
Pcsk2	A	T	2: 143,655,450 (GRCm39)	K545*	probably null	Het
Phf11b	T	C	14: 59,568,722 (GRCm39)	S64G	probably benign	Het
Pira1	C	G	7: 3,740,319 (GRCm39)	A301P	probably damaging	Het
Pygo2	T	C	3: 89,340,235 (GRCm39)	L211P	possibly damaging	Het
Rbbp6	C	T	7: 122,584,468 (GRCm39)	T161I	probably damaging	Het
Rcsd1	A	T	1: 165,482,911 (GRCm39)	I390N	probably benign	Het
Rpl21	T	C	5: 146,772,702 (GRCm39)	V141A	probably benign	Het
Rufy3	C	A	5: 88,790,851 (GRCm39)	D517E	probably benign	Het
Ryr3	A	T	2: 112,606,009 (GRCm39)	L2417Q	probably damaging	Het
Ryr3	C	T	2: 112,705,422 (GRCm39)	E831K	probably damaging	Het
Sipa1l1	A	C	12: 82,496,700 (GRCm39)	Q1744P	probably damaging	Het
Sirt6	A	G	10: 81,458,240 (GRCm39)		probably null	Het
Slain1	C	A	14: 103,925,782 (GRCm39)	Q377K	possibly damaging	Het
Sorcs3	T	A	19: 48,752,734 (GRCm39)	L843Q	possibly damaging	Het
Usp45	G	A	4: 21,824,543 (GRCm39)	A432T	probably benign	Het
Vmn1r91	T	A	7: 19,835,218 (GRCm39)	S46T	possibly damaging	Het
Ybx3	T	C	6: 131,361,469 (GRCm39)	N100S	probably benign	Het
Zfp747	A	G	7: 126,973,225 (GRCm39)	L315P	probably benign	Het
Zfp750	T	C	11: 121,402,706 (GRCm39)	T681A	probably benign	Het

Other mutations in Slc30a6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01336:Slc30a6	APN	17	74,715,834 (GRCm39)	splice site	probably benign
IGL01592:Slc30a6	APN	17	74,726,523 (GRCm39)	splice site	probably benign
IGL02556:Slc30a6	APN	17	74,711,054 (GRCm39)	missense	probably damaging	1.00
IGL03033:Slc30a6	APN	17	74,716,373 (GRCm39)	nonsense	probably null
IGL03149:Slc30a6	APN	17	74,730,018 (GRCm39)	missense	probably damaging	1.00
R0355:Slc30a6	UTSW	17	74,730,198 (GRCm39)	missense	probably benign
R0791:Slc30a6	UTSW	17	74,722,640 (GRCm39)	missense	possibly damaging	0.89
R0792:Slc30a6	UTSW	17	74,722,640 (GRCm39)	missense	possibly damaging	0.89
R1507:Slc30a6	UTSW	17	74,715,857 (GRCm39)	missense	probably damaging	1.00
R1517:Slc30a6	UTSW	17	74,715,842 (GRCm39)	missense	probably benign	0.25
R1585:Slc30a6	UTSW	17	74,725,610 (GRCm39)	splice site	probably benign
R1944:Slc30a6	UTSW	17	74,715,858 (GRCm39)	missense	probably damaging	0.99
R2925:Slc30a6	UTSW	17	74,708,999 (GRCm39)	splice site	probably benign
R3891:Slc30a6	UTSW	17	74,726,541 (GRCm39)	missense	probably benign	0.19
R4840:Slc30a6	UTSW	17	74,712,716 (GRCm39)	missense	probably damaging	1.00
R4863:Slc30a6	UTSW	17	74,719,649 (GRCm39)	missense	possibly damaging	0.84
R5330:Slc30a6	UTSW	17	74,730,190 (GRCm39)	missense	probably benign	0.24
R5331:Slc30a6	UTSW	17	74,730,190 (GRCm39)	missense	probably benign	0.24
R5562:Slc30a6	UTSW	17	74,719,700 (GRCm39)	missense	possibly damaging	0.91
R6458:Slc30a6	UTSW	17	74,730,108 (GRCm39)	missense	probably damaging	1.00
R6681:Slc30a6	UTSW	17	74,711,027 (GRCm39)	missense	possibly damaging	0.53
R7419:Slc30a6	UTSW	17	74,730,424 (GRCm39)	missense	probably benign
R7457:Slc30a6	UTSW	17	74,714,233 (GRCm39)	missense	probably benign	0.05
R7596:Slc30a6	UTSW	17	74,722,664 (GRCm39)	missense	probably benign	0.00
R7844:Slc30a6	UTSW	17	74,711,088 (GRCm39)	splice site	probably null
R8097:Slc30a6	UTSW	17	74,719,693 (GRCm39)	missense	possibly damaging	0.92
R8465:Slc30a6	UTSW	17	74,722,661 (GRCm39)	missense	probably benign	0.04
R8557:Slc30a6	UTSW	17	74,712,685 (GRCm39)	missense	possibly damaging	0.82
R8878:Slc30a6	UTSW	17	74,730,112 (GRCm39)	missense	probably damaging	0.99
R9035:Slc30a6	UTSW	17	74,726,586 (GRCm39)	missense	probably benign	0.23
R9432:Slc30a6	UTSW	17	74,719,699 (GRCm39)	missense	possibly damaging	0.66
R9632:Slc30a6	UTSW	17	74,730,059 (GRCm39)	missense	probably benign	0.01
T0722:Slc30a6	UTSW	17	74,719,319 (GRCm39)	critical splice donor site	probably null
X0003:Slc30a6	UTSW	17	74,719,319 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TGAACTGCATCTCTAGTCCATC -3'
(R):5'- AGAAGTTTAGGACGTTGGGC -3'

Sequencing Primer
(F):5'- GTCCATCTTTTCAAGGGTCACAAATC -3'
(R):5'- TTAGGACGTTGGGCGCAAC -3'

Posted On

2020-01-23