Incidental Mutation 'R8054:Pam'
ID 619228
Institutional Source Beutler Lab
Gene Symbol Pam
Ensembl Gene ENSMUSG00000026335
Gene Name peptidylglycine alpha-amidating monooxygenase
Synonyms PHM
MMRRC Submission 067491-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R8054 (G1)
Quality Score 225.009
Status Validated
Chromosome 1
Chromosomal Location 97748816-98023578 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 97768114 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 705 (D705E)
Ref Sequence ENSEMBL: ENSMUSP00000057112 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000058762] [ENSMUST00000097625] [ENSMUST00000161567]
AlphaFold P97467
Predicted Effect probably damaging
Transcript: ENSMUST00000058762
AA Change: D705E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000057112
Gene: ENSMUSG00000026335
AA Change: D705E

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
Pfam:Cu2_monooxygen 62 178 7.8e-27 PFAM
Pfam:Cu2_monoox_C 199 346 6.2e-47 PFAM
Pfam:NHL 633 662 2.1e-8 PFAM
low complexity region 673 680 N/A INTRINSIC
Pfam:NHL 686 714 2.7e-8 PFAM
Pfam:NHL 782 809 2.8e-7 PFAM
transmembrane domain 870 892 N/A INTRINSIC
low complexity region 908 930 N/A INTRINSIC
low complexity region 950 969 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000097625
AA Change: D705E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000095228
Gene: ENSMUSG00000026335
AA Change: D705E

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
Pfam:Cu2_monooxygen 60 183 3.7e-34 PFAM
Pfam:Cu2_monoox_C 198 349 1.4e-54 PFAM
Pfam:NHL 581 608 9.4e-9 PFAM
Pfam:NHL 633 662 2.1e-8 PFAM
low complexity region 673 680 N/A INTRINSIC
Pfam:NHL 686 714 2.2e-8 PFAM
Pfam:NHL 782 809 3.6e-8 PFAM
transmembrane domain 869 891 N/A INTRINSIC
low complexity region 907 929 N/A INTRINSIC
low complexity region 949 968 N/A INTRINSIC
Predicted Effect
SMART Domains Protein: ENSMUSP00000124284
Gene: ENSMUSG00000026335
AA Change: D68E

DomainStartEndE-ValueType
low complexity region 37 44 N/A INTRINSIC
Pfam:NHL 50 78 4.2e-9 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000161567
AA Change: D599E

PolyPhen 2 Score 0.976 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000125418
Gene: ENSMUSG00000026335
AA Change: D599E

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
Pfam:Cu2_monooxygen 60 183 3.2e-34 PFAM
Pfam:Cu2_monoox_C 198 349 1.2e-54 PFAM
Pfam:NHL 475 502 8.3e-9 PFAM
Pfam:NHL 527 556 1.9e-8 PFAM
low complexity region 567 574 N/A INTRINSIC
Pfam:NHL 580 608 1.9e-8 PFAM
Pfam:NHL 676 703 3.2e-8 PFAM
transmembrane domain 764 786 N/A INTRINSIC
low complexity region 802 824 N/A INTRINSIC
low complexity region 844 863 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000162681
SMART Domains Protein: ENSMUSP00000125133
Gene: ENSMUSG00000026335

DomainStartEndE-ValueType
Pfam:NHL 78 105 6.2e-8 PFAM
low complexity region 160 179 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.4%
Validation Efficiency 100% (75/75)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a multifunctional protein. The encoded preproprotein is proteolytically processed to generate the mature enzyme. This enzyme includes two domains with distinct catalytic activities, a peptidylglycine alpha-hydroxylating monooxygenase (PHM) domain and a peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) domain. These catalytic domains work sequentially to catalyze the conversion of neuroendocrine peptides to active alpha-amidated products. Alternative splicing results in multiple transcript variants, at least one of which encodes an isoform that is proteolytically processed. [provided by RefSeq, Jan 2016]
PHENOTYPE: Homozygous mutation of this gene results in embryonic lethality during fetal growth and development, edema, abnormal yolk sac vasculature, thin arterial walls, and abnormal bronchial epithelial morphology. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb1b A G 5: 8,874,272 (GRCm39) N399S probably benign Het
Akap9 T C 5: 4,088,707 (GRCm39) probably null Het
Ankrd17 A G 5: 90,438,914 (GRCm39) I483T probably benign Het
Arl13b T C 16: 62,626,960 (GRCm39) D247G probably benign Het
Brca2 A G 5: 150,459,969 (GRCm39) I415V probably benign Het
Brpf3 C A 17: 29,055,571 (GRCm39) S1173R probably damaging Het
Cby2 A G 14: 75,821,339 (GRCm39) Y129H probably benign Het
Ccar1 A G 10: 62,583,215 (GRCm39) L966P unknown Het
Cfap61 A G 2: 145,815,438 (GRCm39) N249S probably damaging Het
Clip4 T A 17: 72,141,268 (GRCm39) Y541N possibly damaging Het
Csn2 C T 5: 87,845,886 (GRCm39) probably null Het
Cyp2c23 T G 19: 43,995,555 (GRCm39) E404A probably damaging Het
Cyp2e1 A G 7: 140,350,871 (GRCm39) E281G possibly damaging Het
Cyp2r1 T A 7: 114,151,319 (GRCm39) probably null Het
D430041D05Rik T A 2: 103,985,390 (GRCm39) I1226F possibly damaging Het
Dbx1 A T 7: 49,282,498 (GRCm39) W236R probably damaging Het
Dcp2 T G 18: 44,538,774 (GRCm39) N251K probably benign Het
Disp1 A T 1: 182,869,812 (GRCm39) Y869* probably null Het
Dnajc8 T A 4: 132,272,068 (GRCm39) probably benign Het
Efcab3 A G 11: 104,621,226 (GRCm39) N822D probably benign Het
Ehhadh A G 16: 21,592,243 (GRCm39) probably null Het
Eml3 A T 19: 8,916,414 (GRCm39) T670S possibly damaging Het
Fan1 T A 7: 64,022,234 (GRCm39) N340Y probably damaging Het
Fbn1 A T 2: 125,187,938 (GRCm39) D1530E possibly damaging Het
Gm40460 CACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG CACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG 7: 141,794,554 (GRCm39) probably benign Het
Hsd3b3 A T 3: 98,649,331 (GRCm39) Y331N probably damaging Het
Ino80d T C 1: 63,097,837 (GRCm39) R791G possibly damaging Het
Itprid1 A T 6: 55,953,424 (GRCm39) K913N probably damaging Het
Jade2 T C 11: 51,709,441 (GRCm39) R523G probably benign Het
Kmt2d A T 15: 98,741,806 (GRCm39) D4451E unknown Het
Lax1 T C 1: 133,611,345 (GRCm39) T76A probably benign Het
Map4k1 A G 7: 28,689,181 (GRCm39) probably benign Het
Mcu G A 10: 59,290,817 (GRCm39) T121M probably damaging Het
Mepce T A 5: 137,783,004 (GRCm39) K441* probably null Het
Mettl21e C A 1: 44,245,815 (GRCm39) V144F probably damaging Het
Muc6 T A 7: 141,231,748 (GRCm39) S1049C probably damaging Het
Myh14 C T 7: 44,274,551 (GRCm39) V1246M probably damaging Het
Myo3a A T 2: 22,464,329 (GRCm39) Q1128L probably benign Het
Nat8f2 T C 6: 85,844,754 (GRCm39) S203G probably benign Het
Npas2 A G 1: 39,326,652 (GRCm39) T46A possibly damaging Het
Nup133 T C 8: 124,675,956 (GRCm39) probably benign Het
Oplah C T 15: 76,190,457 (GRCm39) R102H probably benign Het
Or1x6 T A 11: 50,939,090 (GRCm39) I52N probably benign Het
Or2b6 A T 13: 21,823,119 (GRCm39) D191E probably benign Het
Or5g29 A T 2: 85,421,184 (GRCm39) Q100L probably damaging Het
Or6d13 A G 6: 116,517,960 (GRCm39) H182R probably damaging Het
Or8g20 C A 9: 39,396,033 (GRCm39) C172F probably damaging Het
Osgep C T 14: 51,162,128 (GRCm39) probably benign Het
Pkd1l3 C G 8: 110,373,008 (GRCm39) N1284K probably damaging Het
Plekhg2 A G 7: 28,064,741 (GRCm39) F407S probably damaging Het
Pygl A G 12: 70,274,113 (GRCm39) probably null Het
Rcc2 G A 4: 140,429,586 (GRCm39) C40Y probably benign Het
Rhobtb1 A G 10: 69,084,720 (GRCm39) N37S probably damaging Het
Sema6a T A 18: 47,424,972 (GRCm39) D213V probably damaging Het
Skint11 A T 4: 114,101,806 (GRCm39) Q273L possibly damaging Het
Skint7 A T 4: 111,839,426 (GRCm39) H240L probably benign Het
Slc12a2 C T 18: 58,054,944 (GRCm39) Q862* probably null Het
Smox A G 2: 131,364,100 (GRCm39) S468G probably benign Het
Spc25 A G 2: 69,035,257 (GRCm39) S50P probably damaging Het
Srrm1 A T 4: 135,052,326 (GRCm39) S683T unknown Het
Syne1 T C 10: 5,220,970 (GRCm39) E3103G probably benign Het
Tenm4 C A 7: 96,378,553 (GRCm39) probably benign Het
Tent4b T A 8: 88,974,186 (GRCm39) I294N probably damaging Het
Tmem123 T C 9: 7,791,064 (GRCm39) S122P possibly damaging Het
Trav18 A T 14: 54,068,572 (GRCm39) K4I probably benign Het
Triml1 T C 8: 43,583,420 (GRCm39) S394G probably damaging Het
Ubr4 A T 4: 139,195,413 (GRCm39) S1212C unknown Het
Usp34 G A 11: 23,311,295 (GRCm39) R442Q Het
Usp43 G A 11: 67,782,284 (GRCm39) P378L probably damaging Het
Vmn1r212 A G 13: 23,067,935 (GRCm39) F133L probably benign Het
Vmn1r213 A G 13: 23,195,910 (GRCm39) I164M possibly damaging Het
Vmn2r19 C T 6: 123,292,998 (GRCm39) P347S probably damaging Het
Zfp106 A T 2: 120,355,000 (GRCm39) V1280E possibly damaging Het
Zfp317 T C 9: 19,553,265 (GRCm39) S13P probably benign Het
Zfp608 C A 18: 55,032,618 (GRCm39) A441S probably benign Het
Zup1 T C 10: 33,816,248 (GRCm39) D232G probably damaging Het
Other mutations in Pam
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00467:Pam APN 1 97,852,152 (GRCm39) splice site probably benign
IGL00485:Pam APN 1 97,750,678 (GRCm39) missense possibly damaging 0.78
IGL00597:Pam APN 1 97,762,169 (GRCm39) missense probably benign 0.02
IGL01585:Pam APN 1 97,792,197 (GRCm39) missense probably damaging 0.99
IGL01776:Pam APN 1 97,813,325 (GRCm39) critical splice donor site probably null
IGL01981:Pam APN 1 97,762,166 (GRCm39) missense probably damaging 1.00
IGL02152:Pam APN 1 97,768,474 (GRCm39) missense probably damaging 1.00
IGL02605:Pam APN 1 97,768,064 (GRCm39) missense possibly damaging 0.85
IGL02882:Pam APN 1 97,768,092 (GRCm39) missense probably damaging 1.00
IGL03142:Pam APN 1 97,822,111 (GRCm39) missense probably damaging 1.00
IGL03409:Pam APN 1 97,792,054 (GRCm39) missense probably benign 0.04
R0084:Pam UTSW 1 97,823,774 (GRCm39) missense probably benign 0.01
R0200:Pam UTSW 1 97,822,126 (GRCm39) splice site probably null
R0520:Pam UTSW 1 97,811,920 (GRCm39) missense probably benign 0.00
R0734:Pam UTSW 1 97,792,087 (GRCm39) nonsense probably null
R1881:Pam UTSW 1 97,850,876 (GRCm39) missense probably benign 0.06
R2040:Pam UTSW 1 97,792,167 (GRCm39) missense possibly damaging 0.55
R2106:Pam UTSW 1 97,759,215 (GRCm39) missense probably damaging 1.00
R2913:Pam UTSW 1 97,850,854 (GRCm39) missense probably damaging 1.00
R3148:Pam UTSW 1 97,823,403 (GRCm39) missense possibly damaging 0.84
R3618:Pam UTSW 1 97,762,157 (GRCm39) missense probably damaging 1.00
R3619:Pam UTSW 1 97,762,157 (GRCm39) missense probably damaging 1.00
R3847:Pam UTSW 1 97,782,481 (GRCm39) intron probably benign
R3848:Pam UTSW 1 97,782,481 (GRCm39) intron probably benign
R3849:Pam UTSW 1 97,782,481 (GRCm39) intron probably benign
R4128:Pam UTSW 1 97,762,193 (GRCm39) missense probably damaging 0.99
R4231:Pam UTSW 1 97,811,849 (GRCm39) critical splice donor site probably null
R4233:Pam UTSW 1 97,792,119 (GRCm39) missense possibly damaging 0.86
R4404:Pam UTSW 1 97,782,446 (GRCm39) intron probably benign
R4536:Pam UTSW 1 97,772,424 (GRCm39) nonsense probably null
R4738:Pam UTSW 1 97,850,857 (GRCm39) missense probably damaging 1.00
R5054:Pam UTSW 1 97,749,642 (GRCm39) missense probably damaging 1.00
R5501:Pam UTSW 1 97,768,090 (GRCm39) nonsense probably null
R5572:Pam UTSW 1 97,782,469 (GRCm39) intron probably benign
R5654:Pam UTSW 1 97,792,123 (GRCm39) missense probably benign 0.00
R5659:Pam UTSW 1 97,770,024 (GRCm39) missense probably damaging 1.00
R6112:Pam UTSW 1 97,762,193 (GRCm39) missense probably damaging 0.99
R6513:Pam UTSW 1 97,765,752 (GRCm39) missense possibly damaging 0.60
R6696:Pam UTSW 1 97,813,452 (GRCm39) missense possibly damaging 0.79
R6743:Pam UTSW 1 97,823,774 (GRCm39) missense probably benign 0.01
R6833:Pam UTSW 1 97,765,717 (GRCm39) missense probably damaging 0.99
R6834:Pam UTSW 1 97,765,717 (GRCm39) missense probably damaging 0.99
R7098:Pam UTSW 1 97,826,072 (GRCm39) missense probably benign
R7117:Pam UTSW 1 97,904,841 (GRCm39) start gained probably benign
R7152:Pam UTSW 1 97,813,465 (GRCm39) missense probably damaging 1.00
R7172:Pam UTSW 1 97,762,203 (GRCm39) missense probably benign 0.10
R7206:Pam UTSW 1 97,823,757 (GRCm39) missense probably damaging 1.00
R7262:Pam UTSW 1 97,782,448 (GRCm39) missense
R7434:Pam UTSW 1 97,903,515 (GRCm39) nonsense probably null
R7466:Pam UTSW 1 97,769,972 (GRCm39) missense probably damaging 1.00
R7513:Pam UTSW 1 97,780,910 (GRCm39) missense possibly damaging 0.88
R7790:Pam UTSW 1 97,749,572 (GRCm39) missense probably damaging 1.00
R8093:Pam UTSW 1 97,813,357 (GRCm39) missense probably damaging 1.00
R8183:Pam UTSW 1 97,762,199 (GRCm39) missense probably benign 0.08
R8404:Pam UTSW 1 97,823,358 (GRCm39) missense probably damaging 1.00
R8734:Pam UTSW 1 97,762,127 (GRCm39) splice site probably benign
R9092:Pam UTSW 1 97,791,976 (GRCm39) missense probably benign 0.00
R9229:Pam UTSW 1 97,753,660 (GRCm39) missense probably benign 0.02
R9261:Pam UTSW 1 97,903,620 (GRCm39) missense probably benign 0.00
R9409:Pam UTSW 1 97,749,585 (GRCm39) missense probably damaging 1.00
R9435:Pam UTSW 1 97,822,144 (GRCm39) missense probably benign 0.00
R9476:Pam UTSW 1 97,826,065 (GRCm39) critical splice donor site probably null
R9500:Pam UTSW 1 97,772,325 (GRCm39) missense probably benign 0.01
R9510:Pam UTSW 1 97,826,065 (GRCm39) critical splice donor site probably null
R9653:Pam UTSW 1 97,768,469 (GRCm39) missense possibly damaging 0.60
Z1176:Pam UTSW 1 97,862,448 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- CTGGTAACTTCTTTGGGAGTCC -3'
(R):5'- TTCTGTACGTCATGGATGTAAATGG -3'

Sequencing Primer
(F):5'- GGGAGTCCATTATTTCTGCAAAAGG -3'
(R):5'- GTCATGGATGTAAATGGTGTATTTTC -3'
Posted On 2020-01-23