Mutagenetix > Incidental Mutation

Incidental Mutation 'R8057:Pnp2'

619475

Institutional Source

Beutler Lab

Gene Symbol

Pnp2

Ensembl Gene

ENSMUSG00000068417

Gene Name

purine-nucleoside phosphorylase 2

Synonyms

MMRRC Submission

067494-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.129) question?

Stock #

R8057 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

51193598-51202206 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 51201838 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 275 (V275I)

Ref Sequence

ENSEMBL: ENSMUSP00000093615 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000095925] [ENSMUST00000178092] [ENSMUST00000227052]

AlphaFold

Q9D8C9

Predicted Effect

probably benign
Transcript: ENSMUST00000095925
AA Change: V275I

PolyPhen 2 Score 0.058 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000093615
Gene: ENSMUSG00000068417
AA Change: V275I

Domain	Start	End	E-Value	Type
Pfam:PNP_UDP_1	41	295	4.9e-56	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000178092

SMART Domains

Protein: ENSMUSP00000136557
Gene: ENSMUSG00000115338

Domain	Start	End	E-Value	Type
Pfam:PNP_UDP_1	26	280	2e-54	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000227052

Meta Mutation Damage Score

0.1835

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

100% (81/81)

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930523C07Rik	T	C	1: 159,902,826 (GRCm39)	L32P	probably damaging	Het
4930563M21Rik	T	C	9: 55,916,564 (GRCm39)	T38A	unknown	Het
Abcb6	T	C	1: 75,151,002 (GRCm39)	N563D	probably damaging	Het
Ak4	T	C	4: 101,317,850 (GRCm39)	F140S	probably damaging	Het
Arhgap27	T	A	11: 103,229,519 (GRCm39)	R296S	probably damaging	Het
Atxn7l1	A	C	12: 33,376,001 (GRCm39)	K98N	probably damaging	Het
Bex6	G	T	16: 32,005,224 (GRCm39)	D11Y	probably damaging	Het
Camta1	T	C	4: 151,228,489 (GRCm39)	D781G	probably damaging	Het
Capn7	A	G	14: 31,092,936 (GRCm39)	D800G	probably benign	Het
Carmil2	G	A	8: 106,419,008 (GRCm39)	V716I	probably benign	Het
Cdk5	C	A	5: 24,625,782 (GRCm39)	D144Y	probably damaging	Het
Cep85	T	C	4: 133,880,925 (GRCm39)		probably benign	Het
Chd5	T	A	4: 152,450,829 (GRCm39)	L651Q	probably damaging	Het
Cimap1d	T	A	10: 79,475,835 (GRCm39)	H243L	probably damaging	Het
Clcn7	C	T	17: 25,368,233 (GRCm39)	Q261*	probably null	Het
Cntnap2	T	A	6: 46,324,079 (GRCm39)	F576Y	probably damaging	Het
Col11a1	G	A	3: 113,925,263 (GRCm39)	G815D	unknown	Het
Col4a4	T	A	1: 82,501,591 (GRCm39)	R387S	unknown	Het
Cse1l	T	A	2: 166,781,845 (GRCm39)	V663D	probably damaging	Het
Csf2rb2	G	T	15: 78,169,206 (GRCm39)	Q650K	probably damaging	Het
Ctnnd2	A	G	15: 30,847,497 (GRCm39)	D696G	possibly damaging	Het
Dnah7c	T	A	1: 46,728,112 (GRCm39)	C2937S	possibly damaging	Het
Epha10	A	T	4: 124,796,476 (GRCm39)	Q395L		Het
Fam167a	T	A	14: 63,689,769 (GRCm39)	V22E	probably benign	Het
Fan1	T	A	7: 64,022,234 (GRCm39)	N340Y	probably damaging	Het
Gabra4	A	G	5: 71,781,295 (GRCm39)	I372T	probably benign	Het
Gpt	A	G	15: 76,580,972 (GRCm39)		probably benign	Het
H2-K2	C	T	17: 34,215,833 (GRCm39)	G336D	possibly damaging	Het
Hapstr1	C	T	16: 8,648,232 (GRCm39)		probably benign	Het
Hoxd8	T	C	2: 74,535,070 (GRCm39)		probably null	Het
Ilrun	C	T	17: 27,986,863 (GRCm39)	A288T	unknown	Het
Kdm5d	T	G	Y: 927,355 (GRCm39)	D658E	possibly damaging	Het
Krt25	G	A	11: 99,208,169 (GRCm39)	T353M	probably benign	Het
Lonp2	T	C	8: 87,440,717 (GRCm39)	L778P	probably damaging	Het
Lrrc66	G	A	5: 73,764,875 (GRCm39)	Q723*	probably null	Het
Mak	T	A	13: 41,202,813 (GRCm39)	I212F	probably damaging	Het
Mastl	T	A	2: 23,023,566 (GRCm39)	R386W	possibly damaging	Het
Mis18bp1	A	G	12: 65,195,673 (GRCm39)	I697T	possibly damaging	Het
Nek5	G	A	8: 22,578,922 (GRCm39)	T415I	probably benign	Het
Neu3	T	A	7: 99,463,435 (GRCm39)	N96I	probably benign	Het
Nxph2	T	C	2: 23,290,107 (GRCm39)	V153A	possibly damaging	Het
Or10a3	A	T	7: 108,480,571 (GRCm39)	F81I	probably damaging	Het
Or5b102	G	A	19: 13,040,638 (GRCm39)		probably benign	Het
Or8b4	A	G	9: 37,830,460 (GRCm39)	D169G	probably benign	Het
Otogl	T	C	10: 107,644,476 (GRCm39)	T1257A	probably benign	Het
Pcdh10	G	A	3: 45,333,694 (GRCm39)	V3M	probably benign	Het
Pitpnm1	G	A	19: 4,162,145 (GRCm39)	R1017Q	probably null	Het
Plcb3	A	C	19: 6,932,463 (GRCm39)	H1065Q	probably benign	Het
Plcb3	A	T	19: 6,936,267 (GRCm39)	M752K	probably damaging	Het
Plch1	T	C	3: 63,605,557 (GRCm39)	E1449G	probably benign	Het
Plekha4	T	A	7: 45,198,695 (GRCm39)	C573S	probably benign	Het
Plin2	T	C	4: 86,575,638 (GRCm39)	I304V	possibly damaging	Het
Polr1a	G	A	6: 71,908,644 (GRCm39)	A490T	possibly damaging	Het
Ppp1r12b	A	G	1: 134,883,354 (GRCm39)	F56S	probably damaging	Het
Ptk2	GA	G	15: 73,170,048 (GRCm39)		probably null	Het
Rb1cc1	C	A	1: 6,315,443 (GRCm39)	R473S	probably damaging	Het
Rcc2	G	A	4: 140,429,586 (GRCm39)	C40Y	probably benign	Het
Rdx	T	C	9: 51,976,946 (GRCm39)	V65A	probably damaging	Het
Rpl27rt	T	C	18: 34,870,582 (GRCm39)	F39L	probably damaging	Het
Rps6ka5	A	G	12: 100,540,055 (GRCm39)		probably null	Het
Samd5	C	T	10: 9,550,641 (GRCm39)	V23M	probably damaging	Het
Scn9a	T	G	2: 66,345,774 (GRCm39)	R1117S	probably benign	Het
Scrn1	T	A	6: 54,497,758 (GRCm39)	I278L	probably benign	Het
Sec31b	G	T	19: 44,507,804 (GRCm39)	P747T	probably damaging	Het
Sipa1l2	A	T	8: 126,195,269 (GRCm39)	V823E	probably damaging	Het
Slc2a13	T	C	15: 91,400,619 (GRCm39)	N201S	probably damaging	Het
Slc30a3	C	A	5: 31,247,395 (GRCm39)		probably benign	Het
Snx31	C	A	15: 36,523,606 (GRCm39)	V359F	probably damaging	Het
Sstr2	A	G	11: 113,515,099 (GRCm39)	E6G	probably benign	Het
Stc2	C	A	11: 31,317,806 (GRCm39)	E72*	probably null	Het
Tead1	C	T	7: 112,358,721 (GRCm39)	P11L	probably benign	Het
Tmem51	T	C	4: 141,759,059 (GRCm39)	T230A	probably damaging	Het
Tmem63c	A	T	12: 87,118,972 (GRCm39)	K301*	probably null	Het
Tns3	G	C	11: 8,442,773 (GRCm39)	A530G	probably benign	Het
Trat1	T	C	16: 48,562,600 (GRCm39)	D70G	probably damaging	Het
Trex1	T	A	9: 108,887,397 (GRCm39)	E198V	probably damaging	Het
Ttn	T	G	2: 76,570,072 (GRCm39)	R26940S	probably damaging	Het
Uba2	T	C	7: 33,867,835 (GRCm39)	K34R	possibly damaging	Het
Vps13d	A	C	4: 144,701,753 (GRCm39)	M4376R		Het
Zfp157	C	A	5: 138,454,336 (GRCm39)	T178K	probably damaging	Het
Zfp318	T	A	17: 46,710,692 (GRCm39)	V805D	possibly damaging	Het

Other mutations in Pnp2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02025:Pnp2	APN	14	51,197,010 (GRCm39)	missense	probably damaging	1.00
IGL02418:Pnp2	APN	14	51,201,293 (GRCm39)	missense	possibly damaging	0.51
IGL03216:Pnp2	APN	14	51,200,654 (GRCm39)	missense	probably benign	0.01
IGL03388:Pnp2	APN	14	51,200,995 (GRCm39)	missense	probably damaging	1.00
R0049:Pnp2	UTSW	14	51,196,990 (GRCm39)	nonsense	probably null
R0097:Pnp2	UTSW	14	51,200,958 (GRCm39)	missense	probably benign	0.08
R0123:Pnp2	UTSW	14	51,200,634 (GRCm39)	missense	probably damaging	1.00
R0134:Pnp2	UTSW	14	51,200,634 (GRCm39)	missense	probably damaging	1.00
R0158:Pnp2	UTSW	14	51,201,761 (GRCm39)	missense	probably damaging	1.00
R1477:Pnp2	UTSW	14	51,196,992 (GRCm39)	missense	probably benign	0.35
R1820:Pnp2	UTSW	14	51,201,914 (GRCm39)	missense	possibly damaging	0.93
R1934:Pnp2	UTSW	14	51,193,675 (GRCm39)	missense	probably benign
R2138:Pnp2	UTSW	14	51,201,161 (GRCm39)	missense	probably damaging	1.00
R3843:Pnp2	UTSW	14	51,200,878 (GRCm39)	missense	probably null	1.00
R4355:Pnp2	UTSW	14	51,197,082 (GRCm39)	missense	probably benign
R4938:Pnp2	UTSW	14	51,201,025 (GRCm39)	splice site	probably null
R5516:Pnp2	UTSW	14	51,201,195 (GRCm39)	missense	probably benign	0.33
R5636:Pnp2	UTSW	14	51,193,649 (GRCm39)	splice site	probably null
R6396:Pnp2	UTSW	14	51,200,616 (GRCm39)	missense	probably damaging	1.00
R7117:Pnp2	UTSW	14	51,201,931 (GRCm39)	makesense	probably null
R7862:Pnp2	UTSW	14	51,201,016 (GRCm39)	missense	possibly damaging	0.95
R7934:Pnp2	UTSW	14	51,201,903 (GRCm39)	missense	probably benign	0.00
R8104:Pnp2	UTSW	14	51,197,099 (GRCm39)	missense	probably benign	0.00
R8488:Pnp2	UTSW	14	51,201,836 (GRCm39)	missense	possibly damaging	0.79
R8519:Pnp2	UTSW	14	51,201,842 (GRCm39)	missense	probably damaging	1.00
R8791:Pnp2	UTSW	14	51,200,873 (GRCm39)	missense	probably benign	0.00
R8916:Pnp2	UTSW	14	51,201,234 (GRCm39)	missense	probably damaging	1.00
R9592:Pnp2	UTSW	14	51,196,981 (GRCm39)	nonsense	probably null
R9592:Pnp2	UTSW	14	51,196,979 (GRCm39)	missense	probably damaging	0.99
R9762:Pnp2	UTSW	14	51,197,006 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TTCAGTGAACTTCAGAGAGTGAG -3'
(R):5'- TAGAGAGCTACTTGGACCCCAC -3'

Sequencing Primer
(F):5'- GGGTGAGAAGAGCCACATGAGTC -3'
(R):5'- TCTTGGAGAAGCACTTCAGC -3'

Posted On

2020-01-23