Mutagenetix > Incidental Mutation

Incidental Mutation 'R8062:Vmn2r50'

619779

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r50

Ensembl Gene

ENSMUSG00000094606

Gene Name

vomeronasal 2, receptor 50

Synonyms

EG434117

MMRRC Submission

067498-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.117) question?

Stock #

R8062 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

9771162-9787105 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

C to A at 9774240 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000083478 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074943] [ENSMUST00000086298]

AlphaFold

E9PW61

Predicted Effect

probably benign
Transcript: ENSMUST00000074943

SMART Domains

Protein: ENSMUSP00000074476
Gene: ENSMUSG00000094606

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	73	469	1.4e-32	PFAM
Pfam:NCD3G	512	565	2.9e-20	PFAM
Pfam:7tm_3	597	833	1.3e-55	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000086298

SMART Domains

Protein: ENSMUSP00000083478
Gene: ENSMUSG00000094606

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	73	452	7e-31	PFAM
Pfam:NCD3G	496	549	5.3e-19	PFAM
Pfam:7tm_3	579	818	3.9e-78	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abce1	A	T	8: 80,427,773 (GRCm39)	Y172N	possibly damaging	Het
Abhd2	T	A	7: 78,975,338 (GRCm39)	M176K	possibly damaging	Het
Adamts14	A	G	10: 61,036,140 (GRCm39)		probably null	Het
Atg2a	T	C	19: 6,302,609 (GRCm39)		probably null	Het
Bach2	G	A	4: 32,562,937 (GRCm39)	G468E	probably damaging	Het
Bap1	T	A	14: 30,979,465 (GRCm39)	N489K	probably benign	Het
Btaf1	G	A	19: 36,969,865 (GRCm39)	V1180I	probably benign	Het
Calm5	A	G	13: 3,904,405 (GRCm39)	H33R	probably benign	Het
Cby2	A	T	14: 75,830,046 (GRCm39)	I49N	probably benign	Het
Cnr1	T	A	4: 33,944,707 (GRCm39)	V365E	possibly damaging	Het
Crym	A	C	7: 119,800,391 (GRCm39)	V77G	probably damaging	Het
Cyp2j7	T	A	4: 96,103,587 (GRCm39)	E316V	probably null	Het
Dab2	G	A	15: 6,456,822 (GRCm39)	G233D	probably damaging	Het
Ddx19b	A	T	8: 111,747,611 (GRCm39)	S108T	probably benign	Het
Dsc2	C	T	18: 20,165,331 (GRCm39)	G881R	possibly damaging	Het
Duxf1	G	A	10: 58,059,632 (GRCm39)	A374V	unknown	Het
Duxf3	A	C	10: 58,066,750 (GRCm39)	M93R	probably benign	Het
Duxf3	G	A	10: 58,066,889 (GRCm39)	L537F	probably damaging	Het
Eif2s2	A	G	2: 154,719,724 (GRCm39)	F182L	possibly damaging	Het
Erlin1	T	A	19: 44,044,598 (GRCm39)	K156I	probably benign	Het
Gapvd1	A	G	2: 34,568,126 (GRCm39)	S1413P	probably benign	Het
Gm1110	G	A	9: 26,793,117 (GRCm39)	A553V	probably damaging	Het
Gm3250	C	A	10: 77,618,234 (GRCm39)	C48F	unknown	Het
Gm3604	T	C	13: 62,518,155 (GRCm39)	S68G	probably damaging	Het
Golga5	T	A	12: 102,450,739 (GRCm39)	M464K	probably benign	Het
Gpr142	G	A	11: 114,697,357 (GRCm39)	R301Q	probably benign	Het
Gria4	C	T	9: 4,480,273 (GRCm39)	D392N	possibly damaging	Het
Grik2	T	A	10: 49,116,863 (GRCm39)	T633S	probably damaging	Het
Gsap	T	A	5: 21,399,461 (GRCm39)	I54N	probably damaging	Het
Hdlbp	A	G	1: 93,366,064 (GRCm39)	Y40H	probably benign	Het
Hyal5	C	A	6: 24,876,196 (GRCm39)	T23K	possibly damaging	Het
Iqank1	G	A	15: 75,918,603 (GRCm39)	R508H	probably benign	Het
Itga6	T	A	2: 71,672,087 (GRCm39)	F834L	probably benign	Het
Klf1	T	A	8: 85,629,928 (GRCm39)	L251Q	probably benign	Het
Kndc1	A	G	7: 139,498,760 (GRCm39)	D558G	probably benign	Het
Ktn1	T	A	14: 47,962,429 (GRCm39)		probably null	Het
Lcmt2	A	G	2: 120,970,753 (GRCm39)	V110A	possibly damaging	Het
Lgr4	C	T	2: 109,831,282 (GRCm39)	R304C	probably damaging	Het
Lnpk	T	A	2: 74,381,407 (GRCm39)	I119L	possibly damaging	Het
Med13	A	G	11: 86,210,264 (GRCm39)	V626A	probably benign	Het
Mroh9	A	T	1: 162,866,544 (GRCm39)	L700M	probably damaging	Het
Muc4	T	A	16: 32,577,123 (GRCm39)	W138R		Het
Myh2	G	T	11: 67,084,209 (GRCm39)	E1611*	probably null	Het
Myo9b	T	G	8: 71,774,457 (GRCm39)	S323A	probably damaging	Het
Or2n1c	A	T	17: 38,520,065 (GRCm39)	I310F	probably benign	Het
Or4c52	T	A	2: 89,846,080 (GRCm39)	F269I	possibly damaging	Het
Or5t7	A	C	2: 86,507,410 (GRCm39)	V89G	probably benign	Het
Or8b101	G	T	9: 38,020,213 (GRCm39)	C72F	probably damaging	Het
P2ry13	A	T	3: 59,117,703 (GRCm39)	M25K	probably benign	Het
Pan3	T	A	5: 147,463,960 (GRCm39)	F571Y	probably benign	Het
Pdcd11	A	G	19: 47,119,152 (GRCm39)	D1831G	possibly damaging	Het
Peg10	CCACATCAGGATCCACATCAGGATGCACATCAGCATCAGGATCCCCATCAGGATGCACATCAGGATCCACATCAGGATGCACATCAG	CCACATCAGGATCCACATCAGGATGCACATCAG	6: 4,756,398 (GRCm39)		probably benign	Het
Pex1	T	G	5: 3,655,656 (GRCm39)	M161R	probably benign	Het
Piezo2	T	A	18: 63,163,537 (GRCm39)	D2127V	possibly damaging	Het
Plod3	A	T	5: 137,019,123 (GRCm39)	H336L	possibly damaging	Het
Pp2d1	A	T	17: 53,822,798 (GRCm39)	N89K	probably benign	Het
Ppp4r3a	A	G	12: 101,008,230 (GRCm39)	S736P	probably damaging	Het
Prp2	C	A	6: 132,577,651 (GRCm39)	Q313K	unknown	Het
Psma5	T	G	3: 108,173,795 (GRCm39)	D90E	probably benign	Het
Reln	G	A	5: 22,176,990 (GRCm39)	T1892I	probably benign	Het
Rictor	C	T	15: 6,801,635 (GRCm39)	S441L	probably benign	Het
Rsf1	T	G	7: 97,326,594 (GRCm39)	D1039E		Het
Rtel1	A	G	2: 180,982,360 (GRCm39)	D370G	probably benign	Het
Scyl2	T	A	10: 89,490,022 (GRCm39)	N447Y	probably damaging	Het
Sis	A	T	3: 72,828,321 (GRCm39)	Y1222*	probably null	Het
Slc37a3	A	T	6: 39,341,530 (GRCm39)	H35Q	probably damaging	Het
Sltm	A	T	9: 70,480,779 (GRCm39)	K210N	unknown	Het
Spata3	T	C	1: 85,952,148 (GRCm39)	I134T	unknown	Het
Speer4d	A	T	5: 15,825,437 (GRCm39)	N54I	possibly damaging	Het
Syne1	A	G	10: 5,135,394 (GRCm39)		probably null	Het
Tars1	A	T	15: 11,388,400 (GRCm39)	F465Y	possibly damaging	Het
Tlr4	T	G	4: 66,758,087 (GRCm39)	N293K	probably benign	Het
Tmprss13	C	A	9: 45,239,986 (GRCm39)	T98K	unknown	Het
Tnfsf8	G	A	4: 63,779,432 (GRCm39)		probably benign	Het
Trim30b	T	A	7: 104,015,393 (GRCm39)		probably benign	Het
Trpm1	A	G	7: 63,851,689 (GRCm39)	K136E	probably benign	Het
Ttc6	A	G	12: 57,783,764 (GRCm39)	Y1741C	possibly damaging	Het
Usp38	T	C	8: 81,711,218 (GRCm39)	D939G	probably damaging	Het
Vmn1r196	T	A	13: 22,477,440 (GRCm39)	N26K	probably damaging	Het
Wdr3	T	A	3: 100,049,810 (GRCm39)	M773L	probably benign	Het
Zfp993	T	G	4: 146,739,415 (GRCm39)		probably null	Het

Other mutations in Vmn2r50

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01536:Vmn2r50	APN	7	9,771,610 (GRCm39)	missense	probably damaging	1.00
IGL01739:Vmn2r50	APN	7	9,771,364 (GRCm39)	missense	probably damaging	1.00
IGL02351:Vmn2r50	APN	7	9,787,002 (GRCm39)	missense	probably benign	0.01
IGL02358:Vmn2r50	APN	7	9,787,002 (GRCm39)	missense	probably benign	0.01
IGL02871:Vmn2r50	APN	7	9,781,714 (GRCm39)	missense	possibly damaging	0.91
IGL02962:Vmn2r50	APN	7	9,784,252 (GRCm39)	missense	probably damaging	1.00
IGL03187:Vmn2r50	APN	7	9,771,368 (GRCm39)	missense	probably damaging	1.00
IGL03346:Vmn2r50	APN	7	9,779,929 (GRCm39)	missense	probably damaging	0.99
PIT4651001:Vmn2r50	UTSW	7	9,771,659 (GRCm39)	missense	probably benign	0.30
R0530:Vmn2r50	UTSW	7	9,781,644 (GRCm39)	missense	possibly damaging	0.82
R1291:Vmn2r50	UTSW	7	9,771,404 (GRCm39)	missense	probably damaging	0.98
R1438:Vmn2r50	UTSW	7	9,784,062 (GRCm39)	nonsense	probably null
R1713:Vmn2r50	UTSW	7	9,771,731 (GRCm39)	missense	probably damaging	1.00
R1747:Vmn2r50	UTSW	7	9,781,605 (GRCm39)	missense	probably benign	0.20
R1750:Vmn2r50	UTSW	7	9,786,915 (GRCm39)	missense	possibly damaging	0.69
R1918:Vmn2r50	UTSW	7	9,781,610 (GRCm39)	missense	probably benign	0.03
R2435:Vmn2r50	UTSW	7	9,787,026 (GRCm39)	missense	probably benign	0.27
R2511:Vmn2r50	UTSW	7	9,781,640 (GRCm39)	missense	possibly damaging	0.81
R3795:Vmn2r50	UTSW	7	9,771,851 (GRCm39)	missense	probably benign	0.18
R4156:Vmn2r50	UTSW	7	9,774,309 (GRCm39)	missense	probably benign	0.12
R4332:Vmn2r50	UTSW	7	9,786,922 (GRCm39)	missense	probably benign	0.32
R4399:Vmn2r50	UTSW	7	9,781,834 (GRCm39)	missense	possibly damaging	0.81
R4411:Vmn2r50	UTSW	7	9,784,235 (GRCm39)	missense	probably damaging	0.99
R4412:Vmn2r50	UTSW	7	9,784,235 (GRCm39)	missense	probably damaging	0.99
R4413:Vmn2r50	UTSW	7	9,784,235 (GRCm39)	missense	probably damaging	0.99
R4645:Vmn2r50	UTSW	7	9,771,162 (GRCm39)	makesense	probably null
R5151:Vmn2r50	UTSW	7	9,786,970 (GRCm39)	missense	probably benign	0.00
R5175:Vmn2r50	UTSW	7	9,771,644 (GRCm39)	missense	probably damaging	1.00
R5291:Vmn2r50	UTSW	7	9,781,752 (GRCm39)	missense	probably damaging	1.00
R5457:Vmn2r50	UTSW	7	9,781,873 (GRCm39)	missense	probably damaging	0.98
R5559:Vmn2r50	UTSW	7	9,771,253 (GRCm39)	missense	probably damaging	1.00
R5579:Vmn2r50	UTSW	7	9,784,016 (GRCm39)	missense	probably benign	0.00
R5711:Vmn2r50	UTSW	7	9,774,299 (GRCm39)	missense	possibly damaging	0.81
R5759:Vmn2r50	UTSW	7	9,781,905 (GRCm39)	missense	probably damaging	1.00
R6004:Vmn2r50	UTSW	7	9,783,986 (GRCm39)	missense	probably benign	0.00
R6394:Vmn2r50	UTSW	7	9,774,253 (GRCm39)	missense	probably damaging	1.00
R6488:Vmn2r50	UTSW	7	9,771,644 (GRCm39)	missense	probably damaging	1.00
R6762:Vmn2r50	UTSW	7	9,787,010 (GRCm39)	missense	probably benign	0.04
R6995:Vmn2r50	UTSW	7	9,779,964 (GRCm39)	nonsense	probably null
R6998:Vmn2r50	UTSW	7	9,771,684 (GRCm39)	missense	probably benign	0.03
R7019:Vmn2r50	UTSW	7	9,784,172 (GRCm39)	missense	probably benign	0.01
R7027:Vmn2r50	UTSW	7	9,781,539 (GRCm39)	missense	probably damaging	1.00
R7231:Vmn2r50	UTSW	7	9,787,010 (GRCm39)	missense	probably benign	0.04
R7343:Vmn2r50	UTSW	7	9,784,277 (GRCm39)	critical splice acceptor site	probably null
R7554:Vmn2r50	UTSW	7	9,784,066 (GRCm39)	missense	probably null	0.00
R7704:Vmn2r50	UTSW	7	9,781,665 (GRCm39)	missense	probably benign	0.05
R7768:Vmn2r50	UTSW	7	9,771,298 (GRCm39)	missense	probably damaging	0.99
R7773:Vmn2r50	UTSW	7	9,771,562 (GRCm39)	missense	possibly damaging	0.70
R7975:Vmn2r50	UTSW	7	9,771,272 (GRCm39)	missense	probably benign	0.39
R7987:Vmn2r50	UTSW	7	9,772,016 (GRCm39)	missense	probably benign	0.14
R7996:Vmn2r50	UTSW	7	9,781,795 (GRCm39)	missense	probably damaging	0.99
R8396:Vmn2r50	UTSW	7	9,781,639 (GRCm39)	nonsense	probably null
R8466:Vmn2r50	UTSW	7	9,783,997 (GRCm39)	missense	probably damaging	0.97
R8985:Vmn2r50	UTSW	7	9,779,974 (GRCm39)	missense	probably damaging	1.00
R9068:Vmn2r50	UTSW	7	9,772,061 (GRCm39)	missense	possibly damaging	0.46
R9155:Vmn2r50	UTSW	7	9,781,571 (GRCm39)	missense	probably damaging	1.00
R9238:Vmn2r50	UTSW	7	9,781,503 (GRCm39)	missense	probably benign	0.01
R9576:Vmn2r50	UTSW	7	9,771,190 (GRCm39)	missense	probably benign
R9626:Vmn2r50	UTSW	7	9,771,960 (GRCm39)	nonsense	probably null
R9631:Vmn2r50	UTSW	7	9,786,990 (GRCm39)	nonsense	probably null
X0067:Vmn2r50	UTSW	7	9,786,954 (GRCm39)	missense	probably damaging	0.99
Z1088:Vmn2r50	UTSW	7	9,780,086 (GRCm39)	missense	probably benign	0.01
Z1088:Vmn2r50	UTSW	7	9,771,427 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- AGGGTTAAGTCACAGGATATGTTG -3'
(R):5'- GGGAAATGTCAATCAGATAGTGTGC -3'

Sequencing Primer
(F):5'- CACAGGATATGTTGTTTGTTTTTGC -3'
(R):5'- GTCAATCAGATAGTGTGCAAAAATG -3'

Posted On

2020-01-23