Incidental Mutation 'R8065:Smyd3'
ID 619930
Institutional Source Beutler Lab
Gene Symbol Smyd3
Ensembl Gene ENSMUSG00000055067
Gene Name SET and MYND domain containing 3
Synonyms 2410008A19Rik, Zmynd1
MMRRC Submission 067501-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R8065 (G1)
Quality Score 225.009
Status Validated
Chromosome 1
Chromosomal Location 178779525-179345606 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 179238028 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Threonine at position 113 (M113T)
Ref Sequence ENSEMBL: ENSMUSP00000117410 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000111134] [ENSMUST00000128302]
AlphaFold Q9CWR2
Predicted Effect possibly damaging
Transcript: ENSMUST00000111134
AA Change: M113T

PolyPhen 2 Score 0.542 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000106764
Gene: ENSMUSG00000055067
AA Change: M113T

DomainStartEndE-ValueType
Pfam:zf-MYND 40 87 2e-13 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000128302
AA Change: M113T

PolyPhen 2 Score 0.596 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000117410
Gene: ENSMUSG00000055067
AA Change: M113T

DomainStartEndE-ValueType
SET 4 246 1.04e-11 SMART
low complexity region 410 420 N/A INTRINSIC
Meta Mutation Damage Score 0.1493 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.1%
Validation Efficiency 100% (47/47)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a histone methyltransferase which functions in RNA polymerase II complexes by an interaction with a specific RNA helicase. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]
PHENOTYPE: No abnormal phenotype was observed in a high-throughput screen, nor in a pathology assessment. [provided by MGI curators]
Allele List at MGI

All alleles(34) : Targeted, other(5) Gene trapped(29)
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Cap2 T C 13: 46,791,337 (GRCm39) V280A probably damaging Het
Cbx7 A T 15: 79,818,099 (GRCm39) V1D unknown Het
Chodl A T 16: 78,743,601 (GRCm39) L229F probably damaging Het
Depdc5 C A 5: 33,053,252 (GRCm39) N197K possibly damaging Het
Diaph3 A T 14: 87,274,931 (GRCm39) L175Q probably damaging Het
Dlat A T 9: 50,569,149 (GRCm39) M218K possibly damaging Het
Dnai1 T A 4: 41,614,258 (GRCm39) D311E probably damaging Het
Dpp10 A G 1: 123,280,389 (GRCm39) S646P probably benign Het
Ebf1 G A 11: 44,511,374 (GRCm39) V90M probably benign Het
Efhd1 C T 1: 87,192,313 (GRCm39) P48S probably benign Het
Fbxl16 G A 17: 26,036,957 (GRCm39) V313I probably damaging Het
Flrt2 A G 12: 95,747,548 (GRCm39) T629A probably benign Het
Gpr87 T A 3: 59,087,308 (GRCm39) I66F probably damaging Het
Hmmr G A 11: 40,612,499 (GRCm39) S206F probably damaging Het
Hsd17b4 A T 18: 50,303,819 (GRCm39) I431F possibly damaging Het
Iba57 T C 11: 59,054,086 (GRCm39) probably benign Het
Ibtk A C 9: 85,602,916 (GRCm39) S696R probably benign Het
Igkv11-125 C A 6: 67,890,814 (GRCm39) T44N probably benign Het
Itih2 T A 2: 10,128,294 (GRCm39) I136F probably damaging Het
Itpr3 T A 17: 27,329,836 (GRCm39) D1543E probably benign Het
Ldlr T A 9: 21,649,241 (GRCm39) C339S probably damaging Het
Myh2 G A 11: 67,072,170 (GRCm39) E633K probably null Het
Myl10 G C 5: 136,726,825 (GRCm39) V70L probably benign Het
Mylk A T 16: 34,792,389 (GRCm39) E1570V probably benign Het
Myo15b G A 11: 115,778,769 (GRCm39) probably null Het
N4bp2 T A 5: 65,964,639 (GRCm39) L896H probably damaging Het
Naip2 A T 13: 100,325,730 (GRCm39) S59R probably damaging Het
Ndc1 T A 4: 107,247,595 (GRCm39) S468T probably benign Het
Ndst3 T C 3: 123,395,094 (GRCm39) N512S probably damaging Het
Or51b6 A G 7: 103,555,610 (GRCm39) probably benign Het
Or5w15 T A 2: 87,568,147 (GRCm39) I174F probably damaging Het
Plekhn1 T C 4: 156,312,697 (GRCm39) I54V possibly damaging Het
Polr3c T C 3: 96,622,968 (GRCm39) E350G probably null Het
Pskh1 T G 8: 106,656,487 (GRCm39) S388A possibly damaging Het
Pum1 T C 4: 130,478,836 (GRCm39) V486A possibly damaging Het
Rin2 T G 2: 145,702,977 (GRCm39) S558A probably damaging Het
Ripk4 A T 16: 97,564,737 (GRCm39) V58D probably damaging Het
Slc17a3 A G 13: 24,042,070 (GRCm39) R491G unknown Het
Ssh2 A G 11: 77,332,811 (GRCm39) R431G probably damaging Het
Timm22 G A 11: 76,304,931 (GRCm39) D190N probably damaging Het
Ube2g1 G A 11: 72,568,591 (GRCm39) G103D probably benign Het
Zbtb5 A T 4: 44,994,972 (GRCm39) S137R probably benign Het
Zfp105 A G 9: 122,754,194 (GRCm39) T8A probably benign Het
Zfp286 A T 11: 62,644,345 (GRCm39) I192K unknown Het
Zfp942 T C 17: 22,149,391 (GRCm39) Y38C probably damaging Het
Zfpm1 T C 8: 123,062,323 (GRCm39) S461P probably benign Het
Other mutations in Smyd3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02044:Smyd3 APN 1 178,799,844 (GRCm39) missense probably benign
IGL03088:Smyd3 APN 1 178,921,898 (GRCm39) critical splice donor site probably null
D3080:Smyd3 UTSW 1 178,913,987 (GRCm39) missense probably damaging 1.00
R0165:Smyd3 UTSW 1 178,871,437 (GRCm39) missense probably benign
R0230:Smyd3 UTSW 1 179,250,993 (GRCm39) splice site probably benign
R0390:Smyd3 UTSW 1 178,785,138 (GRCm39) splice site probably benign
R1651:Smyd3 UTSW 1 178,871,441 (GRCm39) missense probably benign
R4651:Smyd3 UTSW 1 178,871,306 (GRCm39) missense probably benign 0.08
R4771:Smyd3 UTSW 1 178,921,961 (GRCm39) missense probably damaging 0.99
R5326:Smyd3 UTSW 1 179,238,024 (GRCm39) missense probably benign
R5542:Smyd3 UTSW 1 179,238,024 (GRCm39) missense probably benign
R5697:Smyd3 UTSW 1 179,239,247 (GRCm39) missense probably damaging 1.00
R5850:Smyd3 UTSW 1 178,871,420 (GRCm39) missense probably damaging 1.00
R6732:Smyd3 UTSW 1 179,223,395 (GRCm39) missense probably benign 0.01
R7782:Smyd3 UTSW 1 178,799,859 (GRCm39) missense possibly damaging 0.94
R8067:Smyd3 UTSW 1 179,238,028 (GRCm39) missense possibly damaging 0.60
R8236:Smyd3 UTSW 1 179,233,205 (GRCm39) splice site probably null
R8735:Smyd3 UTSW 1 178,920,482 (GRCm39) missense probably benign 0.12
R9146:Smyd3 UTSW 1 178,920,529 (GRCm39) missense probably damaging 1.00
R9185:Smyd3 UTSW 1 178,877,854 (GRCm39) critical splice donor site probably null
R9200:Smyd3 UTSW 1 179,232,963 (GRCm39) missense probably benign 0.04
R9372:Smyd3 UTSW 1 178,871,470 (GRCm39) missense possibly damaging 0.92
X0024:Smyd3 UTSW 1 178,877,854 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- TGAGAACAGCTGCCCTAGAC -3'
(R):5'- AGACCTGGAGGCATGACTAG -3'

Sequencing Primer
(F):5'- CCTAGACTGAACCTCTGTAAAGATG -3'
(R):5'- GCACTCATGAGACATCTTGTGGAC -3'
Posted On 2020-01-23