Mutagenetix > Incidental Mutation

Incidental Mutation 'R8069:Dennd2c'

620151

Institutional Source

Beutler Lab

Gene Symbol

Dennd2c

Ensembl Gene

ENSMUSG00000007379

Gene Name

DENN domain containing 2C

Synonyms

A930010I20Rik

MMRRC Submission

067504-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8069 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

103009954-103077054 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 103072446 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 844 (F844L)

Ref Sequence

ENSEMBL: ENSMUSP00000127187 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000172288] [ENSMUST00000173206]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000172288
AA Change: F844L

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000127187
Gene: ENSMUSG00000007379
AA Change: F844L

Domain	Start	End	E-Value	Type
uDENN	481	571	1.01e-25	SMART
DENN	578	762	3.36e-77	SMART
dDENN	806	873	1.15e-20	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000173206
AA Change: F787L

PolyPhen 2 Score 0.800 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000134008
Gene: ENSMUSG00000007379
AA Change: F787L

Domain	Start	End	E-Value	Type
uDENN	424	514	1.01e-25	SMART
DENN	521	705	3.36e-77	SMART
dDENN	749	816	1.15e-20	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aasdhppt	T	A	9: 4,296,823 (GRCm39)	D261V	probably benign	Het
Abca8a	T	C	11: 109,980,876 (GRCm39)	Y54C	probably damaging	Het
Adad2	T	C	8: 120,342,746 (GRCm39)	S431P	probably benign	Het
Adam18	A	G	8: 25,118,246 (GRCm39)	Y557H	possibly damaging	Het
Adam5	C	T	8: 25,303,541 (GRCm39)	E129K	probably damaging	Het
Adgra2	T	C	8: 27,609,251 (GRCm39)	V824A	probably benign	Het
Armc12	A	T	17: 28,751,410 (GRCm39)	K135*	probably null	Het
Aup1	C	T	6: 83,032,910 (GRCm39)	Q215*	probably null	Het
AW146154	G	A	7: 41,129,935 (GRCm39)	R394C	probably benign	Het
Canx	T	G	11: 50,202,531 (GRCm39)	D25A	possibly damaging	Het
Ccnf	A	G	17: 24,443,989 (GRCm39)	L593P	probably damaging	Het
Cd40	A	T	2: 164,898,695 (GRCm39)	I41F	unknown	Het
Cdh1	C	T	8: 107,384,405 (GRCm39)	A291V	probably benign	Het
Cdhr2	A	T	13: 54,878,883 (GRCm39)	I963F	probably damaging	Het
Cenpe	G	A	3: 134,949,479 (GRCm39)	G88D	probably damaging	Het
Cep295	T	A	9: 15,233,882 (GRCm39)	T2305S	possibly damaging	Het
Cimap1a	A	T	7: 140,430,215 (GRCm39)	T201S	probably benign	Het
Clcn4	T	C	7: 7,299,758 (GRCm39)	R24G	probably damaging	Het
Cnot7	T	C	8: 40,960,514 (GRCm39)	N98S	possibly damaging	Het
Defa3	T	G	8: 21,778,288 (GRCm39)	C91G	probably damaging	Het
Dido1	T	C	2: 180,302,705 (GRCm39)	D1733G	probably benign	Het
Dnah7b	G	A	1: 46,263,866 (GRCm39)	W2116*	probably null	Het
Dnaja3	T	C	16: 4,502,131 (GRCm39)	V45A	probably benign	Het
Efcab7	T	A	4: 99,717,615 (GRCm39)	S11T	unknown	Het
Enpp2	T	A	15: 54,710,697 (GRCm39)	K744N	probably damaging	Het
Fam171b	CCAGCAGCAGCAGCAGCAGCAGC	CCAGCAGCAGCAGCAGCAGC	2: 83,643,218 (GRCm39)		probably benign	Het
Fdxacb1	T	G	9: 50,680,135 (GRCm39)	F107C	probably damaging	Het
Fnbp1	A	T	2: 30,926,606 (GRCm39)	Y433N	probably damaging	Het
Gatad1	T	C	5: 3,693,540 (GRCm39)	R210G	probably benign	Het
Gm15446	T	A	5: 110,088,306 (GRCm39)	Y6*	probably null	Het
Gm45140	T	C	6: 87,796,551 (GRCm39)	H66R		Het
Grin3b	G	A	10: 79,812,868 (GRCm39)	R981Q	unknown	Het
Ipp	T	G	4: 116,368,053 (GRCm39)	I95M	probably benign	Het
Iqca1	A	G	1: 89,973,466 (GRCm39)	F769L	probably damaging	Het
Jkamp	C	T	12: 72,136,832 (GRCm39)	L67F	probably damaging	Het
Llgl2	T	A	11: 115,744,112 (GRCm39)	M773K	probably damaging	Het
Man2b1	A	G	8: 85,823,674 (GRCm39)	T973A	probably benign	Het
Mcm2	T	C	6: 88,869,039 (GRCm39)	Y271C	probably damaging	Het
Msl2	T	C	9: 100,978,159 (GRCm39)	S178P	probably benign	Het
Myo7a	G	T	7: 97,732,833 (GRCm39)	S648*	probably null	Het
Neurl1b	G	T	17: 26,651,201 (GRCm39)	V158F	probably damaging	Het
Nkain2	A	G	10: 32,766,034 (GRCm39)	V142A	unknown	Het
Nrp2	C	T	1: 62,784,567 (GRCm39)	R239C	probably damaging	Het
Oma1	A	T	4: 103,176,232 (GRCm39)		probably benign	Het
Or10ag58	A	T	2: 87,265,364 (GRCm39)	N178Y	possibly damaging	Het
Or5aq7	A	G	2: 86,938,411 (GRCm39)	Y107H	probably damaging	Het
Plekhg6	T	C	6: 125,340,009 (GRCm39)	T784A	probably benign	Het
Prtg	T	C	9: 72,752,265 (GRCm39)	I217T	probably benign	Het
Ptx4	T	C	17: 25,341,753 (GRCm39)	F76S	probably damaging	Het
Rap1b	A	C	10: 117,657,514 (GRCm39)	I55S	probably damaging	Het
Sftpd	T	C	14: 40,894,538 (GRCm39)	T294A	probably benign	Het
Spg11	C	T	2: 121,943,637 (GRCm39)	V172I	probably benign	Het
Srms	T	A	2: 180,848,751 (GRCm39)	H363L	probably damaging	Het
Tbc1d13	A	T	2: 30,037,415 (GRCm39)	M266L	probably damaging	Het
Tbc1d2	A	C	4: 46,649,737 (GRCm39)	C100G	possibly damaging	Het
Tdg	A	T	10: 82,474,627 (GRCm39)	Q39L	probably benign	Het
Tiam1	G	A	16: 89,586,146 (GRCm39)	A1547V	probably benign	Het
Trpm1	A	G	7: 63,858,718 (GRCm39)	E380G	possibly damaging	Het
Unc13b	T	G	4: 43,177,597 (GRCm39)	D2808E	unknown	Het
Usp25	A	T	16: 76,865,943 (GRCm39)	D287V	possibly damaging	Het
Zfp648	A	T	1: 154,079,862 (GRCm39)	Q7L	probably benign	Het
Zfp931	T	C	2: 177,709,709 (GRCm39)	R226G	probably benign	Het
Zfyve9	T	A	4: 108,542,215 (GRCm39)	E201D	probably benign	Het

Other mutations in Dennd2c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01763:Dennd2c	APN	3	103,064,224 (GRCm39)	missense	probably damaging	1.00
IGL01791:Dennd2c	APN	3	103,073,741 (GRCm39)	missense	probably benign	0.19
IGL02100:Dennd2c	APN	3	103,060,991 (GRCm39)	missense	probably damaging	0.98
IGL02119:Dennd2c	APN	3	103,044,559 (GRCm39)	missense	probably damaging	0.99
IGL02395:Dennd2c	APN	3	103,065,081 (GRCm39)	missense	probably benign	0.00
IGL02631:Dennd2c	APN	3	103,063,387 (GRCm39)	missense	possibly damaging	0.56
IGL02895:Dennd2c	APN	3	103,044,519 (GRCm39)	missense	possibly damaging	0.76
convolution	UTSW	3	103,063,423 (GRCm39)	missense	probably damaging	1.00
Resolution	UTSW	3	103,040,661 (GRCm39)	missense	possibly damaging	0.51
R1749:Dennd2c	UTSW	3	103,039,352 (GRCm39)	missense	possibly damaging	0.92
R1931:Dennd2c	UTSW	3	103,040,568 (GRCm39)	missense	probably benign	0.32
R1964:Dennd2c	UTSW	3	103,073,807 (GRCm39)	missense	probably damaging	1.00
R1972:Dennd2c	UTSW	3	103,039,014 (GRCm39)	missense	probably benign	0.01
R1973:Dennd2c	UTSW	3	103,039,014 (GRCm39)	missense	probably benign	0.01
R2025:Dennd2c	UTSW	3	103,039,005 (GRCm39)	missense	possibly damaging	0.71
R2350:Dennd2c	UTSW	3	103,039,317 (GRCm39)	missense	probably benign	0.00
R2373:Dennd2c	UTSW	3	103,064,158 (GRCm39)	missense	probably damaging	0.99
R4555:Dennd2c	UTSW	3	103,039,202 (GRCm39)	missense	probably benign	0.00
R4916:Dennd2c	UTSW	3	103,039,140 (GRCm39)	missense	probably benign	0.00
R5560:Dennd2c	UTSW	3	103,068,871 (GRCm39)	missense	probably damaging	1.00
R6291:Dennd2c	UTSW	3	103,038,925 (GRCm39)	nonsense	probably null
R6395:Dennd2c	UTSW	3	103,056,540 (GRCm39)	critical splice donor site	probably null
R6567:Dennd2c	UTSW	3	103,039,335 (GRCm39)	missense	probably benign	0.02
R6681:Dennd2c	UTSW	3	103,038,977 (GRCm39)	missense	probably benign	0.01
R7106:Dennd2c	UTSW	3	103,038,893 (GRCm39)	missense	possibly damaging	0.82
R7162:Dennd2c	UTSW	3	103,063,423 (GRCm39)	missense	probably damaging	1.00
R7514:Dennd2c	UTSW	3	103,070,378 (GRCm39)	missense	probably benign	0.00
R7591:Dennd2c	UTSW	3	103,040,661 (GRCm39)	missense	possibly damaging	0.51
R7698:Dennd2c	UTSW	3	103,072,359 (GRCm39)	missense	possibly damaging	0.65
R8086:Dennd2c	UTSW	3	103,040,661 (GRCm39)	missense	possibly damaging	0.51
R8247:Dennd2c	UTSW	3	103,059,637 (GRCm39)	missense	probably damaging	0.99
R8347:Dennd2c	UTSW	3	103,065,025 (GRCm39)	missense	probably damaging	0.99
R8829:Dennd2c	UTSW	3	103,059,720 (GRCm39)	critical splice donor site	probably null
R8832:Dennd2c	UTSW	3	103,059,720 (GRCm39)	critical splice donor site	probably null
R9131:Dennd2c	UTSW	3	103,065,031 (GRCm39)	missense	probably damaging	1.00
R9332:Dennd2c	UTSW	3	103,038,877 (GRCm39)	missense	probably benign	0.01
R9350:Dennd2c	UTSW	3	103,039,308 (GRCm39)	missense	possibly damaging	0.79
R9520:Dennd2c	UTSW	3	103,044,484 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GCTTCCACGTGTCAGTGTTC -3'
(R):5'- ACTCAGATATGCCTTGATAGTCTAC -3'

Sequencing Primer
(F):5'- TGTCAGTGTTCCTCCATACACAAAAC -3'
(R):5'- GCCTGCTGATCCAGATATAGATGC -3'

Posted On

2020-01-23