Mutagenetix > Incidental Mutations

Incidental Mutation 'R8074:Mpdz'

620397

Institutional Source

Beutler Lab

Gene Symbol

Mpdz

Ensembl Gene

ENSMUSG00000028402

Gene Name

multiple PDZ domain protein

Synonyms

B930003D11Rik, MUPP1

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8074 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

81278500-81442815 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 81349087 bp

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 940 (N940S)

Ref Sequence

ENSEMBL: ENSMUSP00000102879 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102830] [ENSMUST00000107258] [ENSMUST00000107262] [ENSMUST00000141995] [ENSMUST00000220807]

Predicted Effect

probably benign
Transcript: ENSMUST00000102830
AA Change: N940S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000099894
Gene: ENSMUSG00000028402
AA Change: N940S

Domain	Start	End	E-Value	Type
L27	6	66	9.04e-3	SMART
PDZ	147	225	3.03e-23	SMART
PDZ	266	338	8.92e-21	SMART
low complexity region	345	360	N/A	INTRINSIC
PDZ	386	464	6.07e-23	SMART
PDZ	556	627	7.31e-17	SMART
PDZ	701	780	9.94e-19	SMART
PDZ	1004	1080	3.44e-13	SMART
low complexity region	1111	1126	N/A	INTRINSIC
PDZ	1148	1231	2.43e-22	SMART
low complexity region	1233	1251	N/A	INTRINSIC
PDZ	1346	1421	3.41e-17	SMART
low complexity region	1434	1445	N/A	INTRINSIC
low complexity region	1454	1468	N/A	INTRINSIC
PDZ	1479	1552	2.69e-15	SMART
PDZ	1622	1697	3.2e-22	SMART
PDZ	1719	1792	3.62e-21	SMART
low complexity region	1798	1815	N/A	INTRINSIC
PDZ	1856	1933	9.79e-18	SMART
PDZ	1980	2055	2.39e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107258
AA Change: N940S

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000102879
Gene: ENSMUSG00000028402
AA Change: N940S

Domain	Start	End	E-Value	Type
PDZ	1	73	3.42e-8	SMART
low complexity region	104	119	N/A	INTRINSIC
PDZ	141	224	2.43e-22	SMART
PDZ	306	381	3.41e-17	SMART
low complexity region	394	405	N/A	INTRINSIC
low complexity region	414	428	N/A	INTRINSIC
PDZ	439	512	2.69e-15	SMART
PDZ	582	657	3.2e-22	SMART
PDZ	679	752	3.62e-21	SMART
low complexity region	758	775	N/A	INTRINSIC
PDZ	816	893	9.79e-18	SMART
PDZ	940	1015	2.39e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107262
AA Change: N940S

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000102883
Gene: ENSMUSG00000028402
AA Change: N940S

Domain	Start	End	E-Value	Type
L27	6	66	9.04e-3	SMART
PDZ	147	225	3.03e-23	SMART
PDZ	266	338	8.92e-21	SMART
low complexity region	345	360	N/A	INTRINSIC
PDZ	386	464	6.07e-23	SMART
PDZ	556	627	7.31e-17	SMART
PDZ	701	780	9.94e-19	SMART
PDZ	1004	1080	3.44e-13	SMART
low complexity region	1112	1127	N/A	INTRINSIC
PDZ	1149	1232	2.43e-22	SMART
low complexity region	1234	1252	N/A	INTRINSIC
PDZ	1347	1422	3.41e-17	SMART
low complexity region	1435	1446	N/A	INTRINSIC
low complexity region	1455	1469	N/A	INTRINSIC
PDZ	1480	1553	2.69e-15	SMART
PDZ	1623	1698	3.2e-22	SMART
PDZ	1720	1793	3.62e-21	SMART
low complexity region	1799	1816	N/A	INTRINSIC
PDZ	1857	1934	9.79e-18	SMART
PDZ	1981	2056	2.39e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000141995
AA Change: N282S

PolyPhen 2 Score 0.100 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000118283
Gene: ENSMUSG00000028402
AA Change: N282S

Domain	Start	End	E-Value	Type
PDZ	82	161	9.94e-19	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000220807
AA Change: N940S

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene has multiple PDZ domains, which are hallmarks of protein-protein interactions. The encoded protein is known to interact with the HTR2C receptor and may cause it to clump at the cell surface. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2015]
PHENOTYPE: Mutant heterozygous mice are more sensitive to ethanol withdrawal effects and consume less alcohol than controls. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca8b	T	A	11: 109,938,494	I1380L	probably benign	Het
Adcy3	T	C	12: 4,134,420	V32A	probably benign	Het
Ano3	T	A	2: 110,950,232		probably benign	Het
Arhgef12	G	A	9: 42,971,103	R1482*	probably null	Het
Cd300lg	T	G	11: 102,041,601	L4R	probably damaging	Het
Cfap57	T	A	4: 118,569,625	K1072M	possibly damaging	Het
Clasp1	G	T	1: 118,462,483	M132I	probably benign	Het
Clec18a	T	G	8: 111,071,598	D489A	probably damaging	Het
Cngb1	A	G	8: 95,252,173	S551P		Het
Efna4	G	A	3: 89,335,326	T87M	probably benign	Het
Fam229b	T	C	10: 39,120,259	R42G	probably null	Het
Gm17175	C	T	14: 51,571,623	M95I	probably damaging	Het
Grk4	A	G	5: 34,676,138	E96G	probably benign	Het
Helb	A	C	10: 120,089,416	F1019V	probably benign	Het
Hsd17b2	T	C	8: 117,758,701	V301A	possibly damaging	Het
Htr1b	A	G	9: 81,631,529	F342L	probably benign	Het
Idua	C	A	5: 108,680,575	A265E	possibly damaging	Het
Jup	T	G	11: 100,386,287	T32P	probably damaging	Het
Kidins220	A	G	12: 25,057,716	K1632E	probably benign	Het
Lef1	G	A	3: 131,204,305		probably null	Het
Lypla2	A	G	4: 135,969,801		probably null	Het
Mall	A	G	2: 127,729,865	M1T	probably null	Het
Mettl25	G	T	10: 105,826,080	A343E	probably benign	Het
Nsun4	A	T	4: 116,051,434	V643D	possibly damaging	Het
Nupr1	A	T	7: 126,624,937	F70Y	possibly damaging	Het
Olfr1047	C	G	2: 86,228,129	V281L	possibly damaging	Het
Olfr202	A	G	16: 59,284,186	F104L	probably benign	Het
Olfr23	T	A	11: 73,940,387	V47D	possibly damaging	Het
Olfr548-ps1	A	G	7: 102,542,623	H229R	probably benign	Het
Olfr671	A	T	7: 104,975,727	I90N	probably damaging	Het
Olfr951	A	T	9: 39,393,946	I49F	probably damaging	Het
Pabpc4	A	T	4: 123,286,715	M77L	probably benign	Het
Phactr3	A	G	2: 178,302,796	E429G	probably damaging	Het
Polr3b	A	G	10: 84,713,659	D915G	probably damaging	Het
Pramef17	A	T	4: 143,991,854	F340I	probably benign	Het
Prkcg	T	A	7: 3,323,521	M501K	probably damaging	Het
Prkch	G	A	12: 73,700,267	A307T	possibly damaging	Het
Ptprt	A	G	2: 161,927,661	V428A	possibly damaging	Het
Rnf145	C	A	11: 44,557,436	D373E	probably damaging	Het
Scfd2	G	T	5: 74,519,596	Q299K	probably benign	Het
Sept2	A	G	1: 93,505,561	D315G	probably benign	Het
Sf3a1	T	A	11: 4,175,435	Y408*	probably null	Het
Siglecf	A	T	7: 43,351,790	N61Y	possibly damaging	Het
Sis	A	T	3: 72,917,198	I1334K	probably damaging	Het
Slc38a6	A	T	12: 73,344,884	T307S	possibly damaging	Het
Spag9	T	A	11: 94,112,051	F1129Y	probably damaging	Het
Sra1	G	A	18: 36,675,011	A388V	possibly damaging	Het
Srpk1	T	G	17: 28,622,016	K12T	probably damaging	Het
Stam2	A	T	2: 52,706,426	I333K	probably damaging	Het
Tle1	GAA	GA	4: 72,138,979		probably null	Het
Tmem121b	T	C	6: 120,492,908	K283E	possibly damaging	Het
Tmem200a	T	C	10: 25,992,952	E473G	probably damaging	Het
Tnxb	T	A	17: 34,703,981	S2513T	probably benign	Het
Ttll8	C	T	15: 88,915,375	C621Y	probably damaging	Het
Ubn2	T	A	6: 38,440,540	M171K	probably benign	Het
Vmn2r19	T	A	6: 123,335,945	V658D	probably damaging	Het
Vwa3a	A	T	7: 120,799,098	I941L	probably benign	Het
Zbtb24	A	G	10: 41,451,232	D38G	probably damaging	Het
Zfp628	T	C	7: 4,920,206	C476R	probably damaging	Het
Zfp831	A	C	2: 174,644,735	N401T	possibly damaging	Het

Other mutations in Mpdz

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00229:Mpdz	APN	4	81310224	nonsense	probably null
IGL00325:Mpdz	APN	4	81317631	missense	probably damaging	1.00
IGL00497:Mpdz	APN	4	81335742	missense	probably benign	0.30
IGL00502:Mpdz	APN	4	81369723	missense	probably damaging	1.00
IGL00539:Mpdz	APN	4	81361351	missense	possibly damaging	0.83
IGL00938:Mpdz	APN	4	81292512	missense	probably damaging	1.00
IGL00990:Mpdz	APN	4	81303584	splice site	probably benign
IGL01394:Mpdz	APN	4	81292491	missense	possibly damaging	0.92
IGL01537:Mpdz	APN	4	81369658	missense	probably damaging	0.98
IGL01558:Mpdz	APN	4	81295530	nonsense	probably null
IGL01561:Mpdz	APN	4	81284614	missense	probably damaging	1.00
IGL01649:Mpdz	APN	4	81303633	missense	probably damaging	0.98
IGL01743:Mpdz	APN	4	81317682	missense	probably damaging	1.00
IGL01941:Mpdz	APN	4	81286387	missense	possibly damaging	0.91
IGL01969:Mpdz	APN	4	81358724	missense	probably damaging	0.98
IGL02023:Mpdz	APN	4	81329529	missense	probably damaging	0.99
IGL02081:Mpdz	APN	4	81335869	missense	probably damaging	1.00
IGL02304:Mpdz	APN	4	81310157	missense	possibly damaging	0.78
IGL02304:Mpdz	APN	4	81297559	splice site	probably benign
IGL02410:Mpdz	APN	4	81297493	missense	probably benign	0.13
IGL02449:Mpdz	APN	4	81329422	splice site	probably null
IGL02671:Mpdz	APN	4	81290273	missense	probably damaging	1.00
IGL02708:Mpdz	APN	4	81284571	splice site	probably null
IGL02718:Mpdz	APN	4	81385202	missense	probably damaging	1.00
IGL03065:Mpdz	APN	4	81292565	missense	probably damaging	0.98
IGL03378:Mpdz	APN	4	81419048	splice site	probably benign
PIT4458001:Mpdz	UTSW	4	81419026	missense	probably damaging	1.00
R0108:Mpdz	UTSW	4	81381805	missense	probably damaging	1.00
R0108:Mpdz	UTSW	4	81381805	missense	probably damaging	1.00
R0119:Mpdz	UTSW	4	81292531	missense	probably benign	0.44
R0402:Mpdz	UTSW	4	81361440	missense	possibly damaging	0.51
R0499:Mpdz	UTSW	4	81292531	missense	probably benign	0.44
R0718:Mpdz	UTSW	4	81292473	missense	possibly damaging	0.79
R0844:Mpdz	UTSW	4	81421194	start gained	probably benign
R0883:Mpdz	UTSW	4	81359991	splice site	probably benign
R0885:Mpdz	UTSW	4	81369592	missense	probably benign	0.04
R1344:Mpdz	UTSW	4	81308319	missense	probably benign	0.01
R1432:Mpdz	UTSW	4	81292551	missense	probably damaging	1.00
R1488:Mpdz	UTSW	4	81348708	nonsense	probably null
R1589:Mpdz	UTSW	4	81421176	missense	probably benign	0.00
R1756:Mpdz	UTSW	4	81306877	missense	possibly damaging	0.87
R1940:Mpdz	UTSW	4	81361443	missense	probably benign	0.01
R2068:Mpdz	UTSW	4	81335830	missense	probably null	1.00
R2182:Mpdz	UTSW	4	81348722	missense	probably damaging	1.00
R2213:Mpdz	UTSW	4	81310172	missense	probably damaging	0.99
R2265:Mpdz	UTSW	4	81383391	missense	probably damaging	1.00
R2268:Mpdz	UTSW	4	81383391	missense	probably damaging	1.00
R2269:Mpdz	UTSW	4	81383391	missense	probably damaging	1.00
R3082:Mpdz	UTSW	4	81285458	splice site	probably benign
R3746:Mpdz	UTSW	4	81363147	missense	probably damaging	1.00
R3902:Mpdz	UTSW	4	81307116	missense	probably damaging	1.00
R4095:Mpdz	UTSW	4	81383823	missense	possibly damaging	0.77
R4097:Mpdz	UTSW	4	81335700	missense	probably damaging	1.00
R4206:Mpdz	UTSW	4	81381762	missense	probably benign	0.13
R4675:Mpdz	UTSW	4	81383812	missense	probably damaging	0.98
R4884:Mpdz	UTSW	4	81361476	missense	probably damaging	0.97
R5044:Mpdz	UTSW	4	81381697	missense	probably benign	0.16
R5050:Mpdz	UTSW	4	81295448	missense	probably benign	0.00
R5243:Mpdz	UTSW	4	81306879	missense	probably damaging	1.00
R5332:Mpdz	UTSW	4	81292580	missense	probably damaging	1.00
R5435:Mpdz	UTSW	4	81283487	intron	probably benign
R5720:Mpdz	UTSW	4	81287694	missense	probably damaging	0.99
R5743:Mpdz	UTSW	4	81421188	start codon destroyed	probably null	0.30
R5764:Mpdz	UTSW	4	81356446	missense	probably benign	0.13
R5876:Mpdz	UTSW	4	81285474	nonsense	probably null
R5938:Mpdz	UTSW	4	81284614	missense	probably damaging	1.00
R5988:Mpdz	UTSW	4	81284575	critical splice donor site	probably null
R6125:Mpdz	UTSW	4	81297527	missense	probably benign	0.00
R6178:Mpdz	UTSW	4	81308365	missense	probably damaging	1.00
R6235:Mpdz	UTSW	4	81385281	missense	probably damaging	1.00
R6293:Mpdz	UTSW	4	81360056	missense	probably damaging	1.00
R6387:Mpdz	UTSW	4	81381709	missense	possibly damaging	0.69
R6488:Mpdz	UTSW	4	81287733	missense	probably benign	0.11
R6536:Mpdz	UTSW	4	81383417	missense	probably damaging	1.00
R6673:Mpdz	UTSW	4	81356430	missense	probably benign	0.11
R6879:Mpdz	UTSW	4	81348656	missense	possibly damaging	0.81
R7180:Mpdz	UTSW	4	81335751	missense	probably damaging	0.98
R7199:Mpdz	UTSW	4	81297333	missense	probably damaging	0.98
R7209:Mpdz	UTSW	4	81306877	missense	possibly damaging	0.87
R7309:Mpdz	UTSW	4	81381958	intron	probably null
R7359:Mpdz	UTSW	4	81356395	missense	probably benign	0.01
R7561:Mpdz	UTSW	4	81307151	missense	probably damaging	0.99
R7565:Mpdz	UTSW	4	81303654	missense	probably benign	0.01
R7738:Mpdz	UTSW	4	81335749	missense	probably benign	0.01
RF013:Mpdz	UTSW	4	81293592	missense	possibly damaging	0.60
X0011:Mpdz	UTSW	4	81292759	critical splice donor site	probably null
Z1177:Mpdz	UTSW	4	81320490	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GTCACCTCTCAGTCAGACAAGC -3'
(R):5'- AGGATGTGACCAGCAGTTCTG -3'

Sequencing Primer
(F):5'- TCATCCCACACGAGGAGG -3'
(R):5'- CCAGCAGTTCTGAAGTAGTGC -3'

Posted On

2020-01-23