Incidental Mutation 'R0711:Trim56'
ID 62728
Institutional Source Beutler Lab
Gene Symbol Trim56
Ensembl Gene ENSMUSG00000043279
Gene Name tripartite motif-containing 56
Synonyms A130009K11Rik, RNF109, LOC384309
MMRRC Submission 038894-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R0711 (G1)
Quality Score 130
Status Validated
Chromosome 5
Chromosomal Location 137140140-137145313 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 137141846 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Lysine at position 557 (E557K)
Ref Sequence ENSEMBL: ENSMUSP00000058109 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000054384] [ENSMUST00000152207]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000054384
AA Change: E557K

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000058109
Gene: ENSMUSG00000043279
AA Change: E557K

DomainStartEndE-ValueType
RING 21 59 9.09e-8 SMART
low complexity region 118 133 N/A INTRINSIC
Pfam:zf-B_box 164 205 1.9e-7 PFAM
coiled coil region 257 291 N/A INTRINSIC
low complexity region 302 309 N/A INTRINSIC
low complexity region 381 399 N/A INTRINSIC
low complexity region 432 447 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000152207
SMART Domains Protein: ENSMUSP00000117874
Gene: ENSMUSG00000043279

DomainStartEndE-ValueType
RING 21 59 9.09e-8 SMART
low complexity region 118 133 N/A INTRINSIC
Pfam:zf-B_box 164 205 2.4e-9 PFAM
Meta Mutation Damage Score 0.0893 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.4%
  • 20x: 91.4%
Validation Efficiency 100% (91/91)
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110002E22Rik T A 3: 137,773,986 (GRCm39) D1058E probably damaging Het
4933405L10Rik A T 8: 106,435,563 (GRCm39) probably null Het
Adamtsl3 T A 7: 82,114,907 (GRCm39) probably benign Het
Afdn C T 17: 14,072,698 (GRCm39) P874S probably damaging Het
Ankrd6 G A 4: 32,815,326 (GRCm39) A391V probably damaging Het
Arhgef28 T G 13: 98,067,762 (GRCm39) T1388P probably damaging Het
Asxl3 G T 18: 22,657,508 (GRCm39) M1839I probably benign Het
BC005537 T C 13: 24,989,923 (GRCm39) F129L probably damaging Het
Celf2 A G 2: 6,726,226 (GRCm39) probably null Het
Chid1 C T 7: 141,076,590 (GRCm39) V325I probably benign Het
Cnn3 T A 3: 121,243,633 (GRCm39) D31E probably benign Het
Col12a1 G A 9: 79,559,317 (GRCm39) P1857L probably damaging Het
Cpeb1 T A 7: 81,001,618 (GRCm39) R430W probably benign Het
Daw1 T C 1: 83,169,059 (GRCm39) probably benign Het
Dcaf13 A G 15: 39,001,484 (GRCm39) Y264C probably damaging Het
Dnah6 T C 6: 73,064,585 (GRCm39) I2666V probably damaging Het
Dnai2 A C 11: 114,645,158 (GRCm39) D531A probably benign Het
Dock10 A T 1: 80,501,692 (GRCm39) F1833I probably damaging Het
Efhd2 C T 4: 141,587,183 (GRCm39) A200T probably damaging Het
Epb41l5 T A 1: 119,551,641 (GRCm39) probably benign Het
Ermp1 A G 19: 29,608,788 (GRCm39) Y164H possibly damaging Het
Gkn2 T C 6: 87,350,401 (GRCm39) probably benign Het
Golgb1 A T 16: 36,739,152 (GRCm39) Q2497L probably damaging Het
Gzme A T 14: 56,355,196 (GRCm39) M245K probably damaging Het
Iars2 A T 1: 185,054,585 (GRCm39) probably benign Het
Icosl T A 10: 77,909,775 (GRCm39) V240D probably damaging Het
Igsf3 T C 3: 101,334,709 (GRCm39) M262T probably benign Het
Ing3 G T 6: 21,971,236 (GRCm39) E336* probably null Het
Kat2a A T 11: 100,597,297 (GRCm39) V625E probably damaging Het
Ksr1 A G 11: 78,929,073 (GRCm39) probably benign Het
Lypd8 A T 11: 58,277,583 (GRCm39) M122L probably benign Het
Mdfi A T 17: 48,143,855 (GRCm39) probably benign Het
Med13 A G 11: 86,192,179 (GRCm39) probably benign Het
Msh6 C T 17: 88,294,112 (GRCm39) R956C probably damaging Het
Myo15b A G 11: 115,774,664 (GRCm39) E670G probably damaging Het
Myo1d A G 11: 80,375,158 (GRCm39) L972P probably damaging Het
Or4s2b A G 2: 88,509,018 (GRCm39) D266G probably damaging Het
Or51ai2 G A 7: 103,587,024 (GRCm39) A146T probably benign Het
Or7g12 T A 9: 18,899,447 (GRCm39) N54K probably benign Het
Pde8b C G 13: 95,244,325 (GRCm39) S143T possibly damaging Het
Pias4 G T 10: 80,993,364 (GRCm39) probably benign Het
Prkca A G 11: 107,872,480 (GRCm39) Y427H probably benign Het
Psg25 G A 7: 18,263,485 (GRCm39) Q113* probably null Het
Rab3gap2 T A 1: 184,982,123 (GRCm39) S392T probably damaging Het
Scrib A G 15: 75,938,756 (GRCm39) probably benign Het
Sdk2 A G 11: 113,793,970 (GRCm39) probably benign Het
Serpinb1c T A 13: 33,070,266 (GRCm39) probably benign Het
Serpinb9f T A 13: 33,511,904 (GRCm39) W136R probably damaging Het
Skic3 C T 13: 76,331,010 (GRCm39) P1480L probably damaging Het
Skint10 C A 4: 112,573,102 (GRCm39) probably benign Het
Slc25a13 T C 6: 6,117,128 (GRCm39) T196A probably damaging Het
Slc26a5 T C 5: 22,052,230 (GRCm39) H33R probably damaging Het
Slc27a6 T C 18: 58,731,829 (GRCm39) probably benign Het
Slitrk6 A T 14: 110,987,251 (GRCm39) Y819N probably damaging Het
Spata46 C T 1: 170,139,603 (GRCm39) Q201* probably null Het
Sptbn1 A T 11: 30,064,739 (GRCm39) V1920E probably damaging Het
Taf6l A G 19: 8,755,881 (GRCm39) F256L probably benign Het
Tmco3 T A 8: 13,342,039 (GRCm39) N104K probably damaging Het
Tmem200c A G 17: 69,149,249 (GRCm39) T611A probably damaging Het
Tmem202 T G 9: 59,432,655 (GRCm39) Y24S probably damaging Het
Tpp1 A G 7: 105,398,626 (GRCm39) L230P probably damaging Het
Trrap C T 5: 144,790,309 (GRCm39) L3590F probably damaging Het
Tulp4 A G 17: 6,189,387 (GRCm39) T70A possibly damaging Het
Vcp G C 4: 42,986,201 (GRCm39) A297G probably benign Het
Vwf T A 6: 125,603,234 (GRCm39) H861Q probably benign Het
Wdr64 T C 1: 175,599,751 (GRCm39) I536T probably benign Het
Zfp850 T C 7: 27,689,698 (GRCm39) N170S probably benign Het
Zfp87 G A 13: 74,524,544 (GRCm39) probably benign Het
Other mutations in Trim56
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01063:Trim56 APN 5 137,143,354 (GRCm39) missense possibly damaging 0.95
IGL02604:Trim56 APN 5 137,141,930 (GRCm39) missense probably damaging 0.98
IGL02653:Trim56 APN 5 137,141,760 (GRCm39) missense probably damaging 1.00
IGL03069:Trim56 APN 5 137,142,616 (GRCm39) missense probably damaging 0.99
R1167:Trim56 UTSW 5 137,141,374 (GRCm39) missense probably damaging 0.98
R1470:Trim56 UTSW 5 137,142,017 (GRCm39) missense probably damaging 0.99
R1470:Trim56 UTSW 5 137,142,017 (GRCm39) missense probably damaging 0.99
R1508:Trim56 UTSW 5 137,142,791 (GRCm39) missense probably benign 0.00
R1791:Trim56 UTSW 5 137,143,252 (GRCm39) missense probably damaging 1.00
R2484:Trim56 UTSW 5 137,141,528 (GRCm39) missense possibly damaging 0.95
R4274:Trim56 UTSW 5 137,142,541 (GRCm39) missense probably damaging 1.00
R4579:Trim56 UTSW 5 137,142,918 (GRCm39) missense possibly damaging 0.60
R4766:Trim56 UTSW 5 137,141,579 (GRCm39) missense probably benign 0.07
R4932:Trim56 UTSW 5 137,143,343 (GRCm39) missense probably damaging 1.00
R5117:Trim56 UTSW 5 137,142,832 (GRCm39) missense probably benign 0.13
R6444:Trim56 UTSW 5 137,141,470 (GRCm39) missense probably damaging 0.99
R6747:Trim56 UTSW 5 137,143,375 (GRCm39) missense probably damaging 1.00
R6962:Trim56 UTSW 5 137,141,501 (GRCm39) missense probably damaging 0.97
R7115:Trim56 UTSW 5 137,142,514 (GRCm39) missense probably damaging 0.98
R7266:Trim56 UTSW 5 137,143,097 (GRCm39) missense probably damaging 0.98
R7706:Trim56 UTSW 5 137,143,510 (GRCm39) missense probably benign 0.00
R8347:Trim56 UTSW 5 137,141,446 (GRCm39) missense probably damaging 1.00
R8492:Trim56 UTSW 5 137,141,783 (GRCm39) missense probably benign
R8695:Trim56 UTSW 5 137,143,429 (GRCm39) missense probably benign 0.15
R9152:Trim56 UTSW 5 137,143,387 (GRCm39) missense probably benign 0.06
R9166:Trim56 UTSW 5 137,142,751 (GRCm39) missense probably damaging 1.00
R9232:Trim56 UTSW 5 137,141,632 (GRCm39) missense probably damaging 1.00
X0019:Trim56 UTSW 5 137,143,064 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACGCTATTCTGCTGCCAATCTGAC -3'
(R):5'- GTTTTCCTGGAGTTTCCCCACGAG -3'

Sequencing Primer
(F):5'- TGGTTAGGAACACCAGTGCC -3'
(R):5'- AGTTTCCCCACGAGGATGC -3'
Posted On 2013-07-30