Incidental Mutation 'R0716:Bmal2'
| ID |
62850 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Bmal2
|
| Ensembl Gene |
ENSMUSG00000040187 |
| Gene Name |
basic helix-loop-helix ARNT like 2 |
| Synonyms |
bHLHe6, MOP9, 4632430A05Rik, Arntl2 |
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.373)
|
| Stock # |
R0716 (G1)
|
| Quality Score |
160 |
|
Status
|
Not validated
|
| Chromosome |
6 |
| Chromosomal Location |
146697553-146735027 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 146731218 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Glycine
at position 508
(S508G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000107266
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000080530]
[ENSMUST00000111636]
[ENSMUST00000111638]
[ENSMUST00000111639]
[ENSMUST00000129788]
|
| AlphaFold |
Q2VPD4 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000080530
AA Change: S508G
PolyPhen 2
Score 0.819 (Sensitivity: 0.84; Specificity: 0.93)
|
| SMART Domains |
Protein: ENSMUSP00000079373
Gene: ENSMUSG00000040187
AA Change: S508G
| Domain | Start | End | E-Value | Type |
|---|
|
HLH
|
54 |
107 |
6.51e-14 |
SMART |
|
PAS
|
122 |
189 |
6.2e-7 |
SMART |
|
PAS
|
298 |
364 |
2.7e-7 |
SMART |
|
PAC
|
371 |
414 |
1.72e0 |
SMART |
|
low complexity region
|
427 |
438 |
N/A |
INTRINSIC |
|
low complexity region
|
472 |
483 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111636
AA Change: S499G
PolyPhen 2
Score 0.693 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000107263
Gene: ENSMUSG00000040187
AA Change: S499G
| Domain | Start | End | E-Value | Type |
|---|
|
HLH
|
54 |
107 |
6.51e-14 |
SMART |
|
PAS
|
122 |
189 |
6.2e-7 |
SMART |
|
PAS
|
298 |
364 |
2.7e-7 |
SMART |
|
PAC
|
371 |
414 |
1.72e0 |
SMART |
|
low complexity region
|
427 |
438 |
N/A |
INTRINSIC |
|
low complexity region
|
472 |
483 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111638
AA Change: S498G
PolyPhen 2
Score 0.819 (Sensitivity: 0.84; Specificity: 0.93)
|
| SMART Domains |
Protein: ENSMUSP00000107265
Gene: ENSMUSG00000040187
AA Change: S498G
| Domain | Start | End | E-Value | Type |
|---|
|
HLH
|
54 |
107 |
6.51e-14 |
SMART |
|
PAS
|
122 |
189 |
6.2e-7 |
SMART |
|
PAS
|
298 |
364 |
1.29e-4 |
SMART |
|
PAC
|
361 |
404 |
3.66e0 |
SMART |
|
low complexity region
|
417 |
428 |
N/A |
INTRINSIC |
|
low complexity region
|
462 |
473 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111639
AA Change: S508G
PolyPhen 2
Score 0.819 (Sensitivity: 0.84; Specificity: 0.93)
|
| SMART Domains |
Protein: ENSMUSP00000107266
Gene: ENSMUSG00000040187
AA Change: S508G
| Domain | Start | End | E-Value | Type |
|---|
|
HLH
|
54 |
107 |
6.51e-14 |
SMART |
|
PAS
|
122 |
189 |
6.2e-7 |
SMART |
|
PAS
|
298 |
364 |
2.7e-7 |
SMART |
|
PAC
|
371 |
414 |
1.72e0 |
SMART |
|
low complexity region
|
427 |
438 |
N/A |
INTRINSIC |
|
low complexity region
|
472 |
483 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000129788
|
| SMART Domains |
Protein: ENSMUSP00000121170
Gene: ENSMUSG00000040187
| Domain | Start | End | E-Value | Type |
|---|
|
HLH
|
54 |
107 |
6.51e-14 |
SMART |
|
PAS
|
122 |
189 |
6.2e-7 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000204578
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.7%
- 10x: 97.3%
- 20x: 94.8%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a basic helix-loop-helix transcription factor belonging to the PAS (Per, Arnt, Sim) superfamily. The PAS proteins play important roles in adaptation to low atmospheric and cellular oxygen levels, exposure to certain environmental pollutants, and diurnal oscillations in light and temperature. This protein forms a transcriptionally active heterodimer with the circadian Clock protein, the structurally related Mop4, and hypoxia-inducible factors, such as Hif1alpha. Consistent with its role as a biologically relevant partner of circadian and hypoxia factors, this protein is coexpressed in regions of the brain such as the thalamus, hypothalamus, and amygdala. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Feb 2014]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 5 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Gm5444 |
A |
G |
13: 4,884,192 (GRCm39) |
|
noncoding transcript |
Het |
| Pkd1l2 |
A |
T |
8: 117,777,839 (GRCm39) |
V904E |
probably damaging |
Het |
| Prl3b1 |
A |
G |
13: 27,427,779 (GRCm39) |
T30A |
probably benign |
Het |
| Ssb |
A |
G |
2: 69,697,703 (GRCm39) |
T145A |
probably benign |
Het |
| Vmn2r110 |
T |
C |
17: 20,794,165 (GRCm39) |
R835G |
probably damaging |
Het |
|
| Other mutations in Bmal2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00477:Bmal2
|
APN |
6 |
146,728,827 (GRCm39) |
splice site |
probably benign |
|
|
IGL00481:Bmal2
|
APN |
6 |
146,711,164 (GRCm39) |
missense |
probably benign |
0.11 |
|
IGL02141:Bmal2
|
APN |
6 |
146,729,593 (GRCm39) |
splice site |
probably benign |
|
|
IGL02402:Bmal2
|
APN |
6 |
146,711,266 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R0054:Bmal2
|
UTSW |
6 |
146,731,216 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0054:Bmal2
|
UTSW |
6 |
146,731,216 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0131:Bmal2
|
UTSW |
6 |
146,729,601 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0403:Bmal2
|
UTSW |
6 |
146,724,153 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0799:Bmal2
|
UTSW |
6 |
146,724,751 (GRCm39) |
splice site |
probably benign |
|
|
R0834:Bmal2
|
UTSW |
6 |
146,724,185 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1909:Bmal2
|
UTSW |
6 |
146,712,308 (GRCm39) |
missense |
probably benign |
0.01 |
|
R2270:Bmal2
|
UTSW |
6 |
146,723,612 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2272:Bmal2
|
UTSW |
6 |
146,723,612 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3715:Bmal2
|
UTSW |
6 |
146,724,187 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4370:Bmal2
|
UTSW |
6 |
146,711,149 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5399:Bmal2
|
UTSW |
6 |
146,724,159 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5894:Bmal2
|
UTSW |
6 |
146,724,732 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R5972:Bmal2
|
UTSW |
6 |
146,711,187 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6090:Bmal2
|
UTSW |
6 |
146,731,194 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R6111:Bmal2
|
UTSW |
6 |
146,722,097 (GRCm39) |
missense |
probably benign |
0.16 |
|
R6279:Bmal2
|
UTSW |
6 |
146,723,444 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6300:Bmal2
|
UTSW |
6 |
146,723,444 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6452:Bmal2
|
UTSW |
6 |
146,724,705 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6722:Bmal2
|
UTSW |
6 |
146,720,398 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7296:Bmal2
|
UTSW |
6 |
146,723,632 (GRCm39) |
missense |
not run |
|
|
R7335:Bmal2
|
UTSW |
6 |
146,711,217 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7481:Bmal2
|
UTSW |
6 |
146,720,369 (GRCm39) |
missense |
not run |
|
|
R7655:Bmal2
|
UTSW |
6 |
146,707,940 (GRCm39) |
missense |
probably benign |
0.31 |
|
R7656:Bmal2
|
UTSW |
6 |
146,707,940 (GRCm39) |
missense |
probably benign |
0.31 |
|
R7951:Bmal2
|
UTSW |
6 |
146,714,732 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8015:Bmal2
|
UTSW |
6 |
146,722,088 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8876:Bmal2
|
UTSW |
6 |
146,723,492 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8959:Bmal2
|
UTSW |
6 |
146,722,142 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9794:Bmal2
|
UTSW |
6 |
146,734,033 (GRCm39) |
missense |
probably benign |
0.04 |
|
| Predicted Primers |
PCR Primer
(F):5'- AAATCTTCTGGCCTCCACAGTGCG -3'
(R):5'- ACCTGCTTCTTCAAAAGGCCCCTG -3'
Sequencing Primer
(F):5'- cacacacatcacacacacac -3'
(R):5'- AAGGCCCCTGTGTTTAAGGAC -3'
|
| Posted On |
2013-07-30 |
Incidental Mutation