Mutagenetix > Incidental Mutation

Incidental Mutation 'R7820:Samd3'

628753

Institutional Source

Beutler Lab

Gene Symbol

Samd3

Ensembl Gene

ENSMUSG00000051354

Gene Name

sterile alpha motif domain containing 3

Synonyms

LOC268288

MMRRC Submission

045874-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.194) question?

Stock #

R7820 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

26105605-26148070 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to A at 26109416 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000151558 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060716] [ENSMUST00000164660] [ENSMUST00000218301] [ENSMUST00000220219]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000060716

SMART Domains

Protein: ENSMUSP00000057805
Gene: ENSMUSG00000051354

Domain	Start	End	E-Value	Type
SAM	1	66	3e-7	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000164660

SMART Domains

Protein: ENSMUSP00000129054
Gene: ENSMUSG00000051354

Domain	Start	End	E-Value	Type
SAM	1	66	3e-7	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000218301

Predicted Effect

probably null
Transcript: ENSMUST00000220219

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

96% (49/51)

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933405O20Rik	T	A	7: 50,249,371 (GRCm39)	I135N	probably benign	Het
Abca14	A	T	7: 119,811,944 (GRCm39)	N175I	probably benign	Het
Adam12	A	G	7: 133,599,917 (GRCm39)	V99A	probably benign	Het
Ankfn1	G	T	11: 89,311,956 (GRCm39)	P730T	probably damaging	Het
Arhgap21	A	G	2: 20,867,983 (GRCm39)	S847P	probably damaging	Het
Cacna1i	C	T	15: 80,256,573 (GRCm39)	A989V	probably benign	Het
Cacnb2	T	A	2: 14,965,477 (GRCm39)	N152K	probably damaging	Het
Cemip2	C	T	19: 21,784,825 (GRCm39)	A436V	probably damaging	Het
Chd3	A	T	11: 69,244,064 (GRCm39)	Y1334N	probably damaging	Het
Cimap1a	A	C	7: 140,429,176 (GRCm39)	T128P	probably benign	Het
Clca4a	A	T	3: 144,666,432 (GRCm39)	D473E	probably damaging	Het
Crhr2	A	C	6: 55,079,764 (GRCm39)	I191S	probably damaging	Het
Eef1akmt3	T	C	10: 126,869,063 (GRCm39)	Q137R	possibly damaging	Het
Eml1	T	C	12: 108,481,433 (GRCm39)	I432T	possibly damaging	Het
Fcgbp	A	G	7: 27,819,784 (GRCm39)	T2504A	probably benign	Het
Hmgxb4	G	T	8: 75,727,574 (GRCm39)	E186*	probably null	Het
Ighv16-1	T	C	12: 114,032,589 (GRCm39)	N71S	probably benign	Het
Kif2b	A	G	11: 91,468,100 (GRCm39)	V61A	probably benign	Het
Map1b	C	T	13: 99,567,685 (GRCm39)	G1679R	unknown	Het
Mast4	G	A	13: 102,890,596 (GRCm39)	S1086L	probably damaging	Het
Mcm8	A	G	2: 132,682,692 (GRCm39)	E724G	possibly damaging	Het
Mfap5	C	A	6: 122,497,880 (GRCm39)	D51E	probably damaging	Het
Mon1a	T	C	9: 107,778,511 (GRCm39)	L245P	probably damaging	Het
Mtx1	G	T	3: 89,121,315 (GRCm39)	H106Q	probably benign	Het
Naip1	G	A	13: 100,559,578 (GRCm39)	S1142F	probably benign	Het
Ngp	A	G	9: 110,249,932 (GRCm39)	T77A	probably benign	Het
Oca2	A	T	7: 55,981,713 (GRCm39)	I612F	probably damaging	Het
Or11a4	A	T	17: 37,536,786 (GRCm39)	M257L	probably benign	Het
Or4c119	T	A	2: 88,986,592 (GRCm39)	D309V	probably benign	Het
Or8b3	A	T	9: 38,314,862 (GRCm39)	I228F	probably damaging	Het
Otop3	T	A	11: 115,230,414 (GRCm39)	V97D	probably damaging	Het
Ovgp1	A	G	3: 105,893,837 (GRCm39)		probably benign	Het
Pdc	T	C	1: 150,209,021 (GRCm39)	I168T	probably damaging	Het
Peg10	CCACATCAGGATCCACATCAGGATGCACATCAGCATCAGGATCCCCATCAGGATGCACATCAGGATCCACATCAGGATGCACATCAG	CCACATCAGGATCCACATCAGGATGCACATCAG	6: 4,756,398 (GRCm39)		probably benign	Het
Plekha7	A	T	7: 115,836,715 (GRCm39)	F18I	probably benign	Het
Plppr4	A	G	3: 117,115,598 (GRCm39)	I753T	possibly damaging	Het
Pms2	T	G	5: 143,851,451 (GRCm39)	S123A	possibly damaging	Het
Pou4f2	T	A	8: 79,163,131 (GRCm39)		probably benign	Het
Ptch1	A	T	13: 63,670,875 (GRCm39)	L885Q	probably damaging	Het
Repin1	G	T	6: 48,574,279 (GRCm39)	E403*	probably null	Het
Rgs11	T	A	17: 26,424,169 (GRCm39)		probably null	Het
Slit3	A	G	11: 35,591,235 (GRCm39)	D1349G	probably benign	Het
Sorbs2	A	T	8: 46,249,593 (GRCm39)	Q868L	probably null	Het
Speer4f1	T	A	5: 17,684,528 (GRCm39)	S185R	probably damaging	Het
Spin2f	A	G	X: 30,905,635 (GRCm39)	K28R	probably benign	Het
Tas2r125	T	G	6: 132,886,841 (GRCm39)	I76M	probably benign	Het
Tex15	A	T	8: 34,065,090 (GRCm39)	I1507F	probably damaging	Het
Vmn1r215	A	T	13: 23,260,715 (GRCm39)	I252F	probably damaging	Het
Vmn1r71	A	G	7: 10,482,652 (GRCm39)	F12S	possibly damaging	Het
Zfp128	A	G	7: 12,624,949 (GRCm39)	Y439C	probably benign	Het
Zfp764l1	A	T	7: 126,990,608 (GRCm39)	W460R	possibly damaging	Het

Other mutations in Samd3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00532:Samd3	APN	10	26,127,744 (GRCm39)	missense	probably damaging	1.00
IGL00754:Samd3	APN	10	26,120,425 (GRCm39)	missense	probably benign	0.19
IGL01672:Samd3	APN	10	26,146,067 (GRCm39)	missense	possibly damaging	0.94
IGL02211:Samd3	APN	10	26,109,455 (GRCm39)	missense	probably damaging	1.00
IGL02397:Samd3	APN	10	26,109,474 (GRCm39)	missense	possibly damaging	0.85
IGL02755:Samd3	APN	10	26,120,475 (GRCm39)	missense	probably damaging	1.00
IGL02885:Samd3	APN	10	26,147,762 (GRCm39)	missense	probably benign	0.43
IGL03115:Samd3	APN	10	26,147,606 (GRCm39)	missense	probably damaging	1.00
IGL03157:Samd3	APN	10	26,139,740 (GRCm39)	missense	probably benign	0.05
IGL03172:Samd3	APN	10	26,106,064 (GRCm39)	missense	probably damaging	1.00
BB006:Samd3	UTSW	10	26,127,813 (GRCm39)	missense	probably damaging	1.00
BB016:Samd3	UTSW	10	26,127,813 (GRCm39)	missense	probably damaging	1.00
R0034:Samd3	UTSW	10	26,147,398 (GRCm39)	splice site	probably benign
R0081:Samd3	UTSW	10	26,147,399 (GRCm39)	splice site	probably benign
R0197:Samd3	UTSW	10	26,147,752 (GRCm39)	missense	possibly damaging	0.77
R0566:Samd3	UTSW	10	26,120,396 (GRCm39)	missense	possibly damaging	0.83
R0632:Samd3	UTSW	10	26,120,393 (GRCm39)	missense	possibly damaging	0.86
R0782:Samd3	UTSW	10	26,146,138 (GRCm39)	missense	probably damaging	0.97
R0834:Samd3	UTSW	10	26,147,725 (GRCm39)	missense	probably benign	0.01
R1106:Samd3	UTSW	10	26,147,689 (GRCm39)	missense	possibly damaging	0.57
R1844:Samd3	UTSW	10	26,127,672 (GRCm39)	missense	probably damaging	1.00
R1907:Samd3	UTSW	10	26,147,754 (GRCm39)	nonsense	probably null
R1929:Samd3	UTSW	10	26,139,884 (GRCm39)	splice site	probably benign
R2925:Samd3	UTSW	10	26,127,785 (GRCm39)	missense	probably benign	0.37
R5104:Samd3	UTSW	10	26,139,686 (GRCm39)	missense	possibly damaging	0.61
R5736:Samd3	UTSW	10	26,146,070 (GRCm39)	missense	probably damaging	1.00
R7120:Samd3	UTSW	10	26,106,864 (GRCm39)	missense	possibly damaging	0.77
R7437:Samd3	UTSW	10	26,146,004 (GRCm39)	missense	possibly damaging	0.78
R7510:Samd3	UTSW	10	26,106,006 (GRCm39)	missense	probably benign
R7599:Samd3	UTSW	10	26,139,711 (GRCm39)	missense	probably benign	0.00
R7801:Samd3	UTSW	10	26,139,770 (GRCm39)	missense	possibly damaging	0.57
R7806:Samd3	UTSW	10	26,120,425 (GRCm39)	missense	probably benign	0.19
R7929:Samd3	UTSW	10	26,127,813 (GRCm39)	missense	probably damaging	1.00
R8298:Samd3	UTSW	10	26,121,468 (GRCm39)	missense	probably damaging	1.00
R8979:Samd3	UTSW	10	26,120,428 (GRCm39)	missense	possibly damaging	0.93
R9381:Samd3	UTSW	10	26,147,643 (GRCm39)	missense	probably benign	0.08

Predicted Primers

PCR Primer
(F):5'- TGACATCAGCCTCATTGTGTG -3'
(R):5'- AGCATCTCCATCACTTGATAGAAG -3'

Sequencing Primer
(F):5'- TGAGGTGAGGCACAGGATCTTC -3'
(R):5'- TCCATCACTTGATAGAAGCTTACC -3'

Posted On

2020-06-19