Mutagenetix > Incidental Mutation

Incidental Mutation 'R8077:Or13a17'

629078

Institutional Source

Beutler Lab

Gene Symbol

Or13a17

Ensembl Gene

ENSMUSG00000066122

Gene Name

olfactory receptor family 13 subfamily A member 17

Synonyms

IB6, Olfr45, MOR253-2, GA_x6K02T2PBJ9-42837030-42837962

MMRRC Submission

067511-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.068) question?

Stock #

R8077 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

140270797-140271832 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 140271046 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Phenylalanine at position 76 (S76F)

Ref Sequence

ENSEMBL: ENSMUSP00000149309 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000084454] [ENSMUST00000214637]

AlphaFold

Q8VGM1

Predicted Effect

probably benign
Transcript: ENSMUST00000084454
AA Change: S76F

PolyPhen 2 Score 0.159 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000081492
Gene: ENSMUSG00000066122
AA Change: S76F

Domain	Start	End	E-Value	Type
Pfam:7tm_4	32	308	2.8e-50	PFAM
Pfam:7TM_GPCR_Srsx	36	176	1.2e-7	PFAM
Pfam:7tm_1	42	291	3.7e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000214637
AA Change: S76F

PolyPhen 2 Score 0.159 (Sensitivity: 0.92; Specificity: 0.87)

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.8%
20x: 95.4%

Validation Efficiency

100% (60/60)

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700093K21Rik	A	T	11: 23,467,237 (GRCm39)	V132E	probably benign	Het
4930563M21Rik	C	T	9: 55,895,250 (GRCm39)	V315M	probably damaging	Het
Aadacl4fm1	T	C	4: 144,255,126 (GRCm39)	I182T	probably benign	Het
Alb	G	C	5: 90,615,214 (GRCm39)	R242P	probably damaging	Het
Amotl1	A	T	9: 14,461,798 (GRCm39)	V805D	probably damaging	Het
Arhgef3	T	C	14: 27,107,881 (GRCm39)	L179P	probably damaging	Het
Atp8b3	G	A	10: 80,366,858 (GRCm39)	L247F	possibly damaging	Het
Ccdc191	T	C	16: 43,735,968 (GRCm39)		probably null	Het
Celsr3	A	G	9: 108,705,530 (GRCm39)	H671R	probably benign	Het
Cemip	C	A	7: 83,652,616 (GRCm39)		probably benign	Het
Cfap97	G	T	8: 46,623,482 (GRCm39)	V291F	possibly damaging	Het
Clca3a2	A	G	3: 144,777,288 (GRCm39)	V861A	possibly damaging	Het
Cln8	A	T	8: 14,944,950 (GRCm39)	D88V	probably damaging	Het
Col18a1	C	A	10: 76,916,685 (GRCm39)	G330V	unknown	Het
Dis3	C	T	14: 99,327,471 (GRCm39)	R344Q	probably benign	Het
Esyt2	T	A	12: 116,305,848 (GRCm39)	S359R	possibly damaging	Het
Fbxo41	A	T	6: 85,450,211 (GRCm39)	L844Q	probably damaging	Het
Fn1	G	A	1: 71,651,761 (GRCm39)	T1372M	probably damaging	Het
Gbp5	G	A	3: 142,213,500 (GRCm39)	R472H	probably benign	Het
Gm4559	C	T	7: 141,827,553 (GRCm39)	R183K	unknown	Het
Gm9507	T	A	10: 77,647,604 (GRCm39)	E25V	unknown	Het
Golgb1	A	G	16: 36,738,995 (GRCm39)	I2486V	probably damaging	Het
Ifitm10	A	T	7: 141,924,704 (GRCm39)	V45D	probably damaging	Het
Ift80	A	G	3: 68,823,478 (GRCm39)	Y595H	probably benign	Het
Itga8	C	T	2: 12,247,244 (GRCm39)	V326I	probably benign	Het
Kif14	A	T	1: 136,399,186 (GRCm39)	H449L	possibly damaging	Het
Klrh1	A	G	6: 129,743,658 (GRCm39)	Y209H	probably benign	Het
Ldlrad1	G	A	4: 107,066,688 (GRCm39)	A8T	probably benign	Het
Lrrc8b	C	A	5: 105,627,883 (GRCm39)	S76R	possibly damaging	Het
Lrrn1	T	C	6: 107,545,783 (GRCm39)	L527P	probably damaging	Het
Luc7l	T	C	17: 26,474,047 (GRCm39)	V35A	probably damaging	Het
Luzp1	T	G	4: 136,270,402 (GRCm39)	V875G	probably damaging	Het
Mcf2l	G	T	8: 13,048,494 (GRCm39)		probably null	Het
Mcoln2	T	C	3: 145,896,169 (GRCm39)	M497T	probably damaging	Het
Mrgprb4	A	T	7: 47,848,203 (GRCm39)	S242T	probably benign	Het
Muc21	TCAGTGGTGGTCAGGATGGGGGTAGAGCCTGAGCCACTCCTGGATGCAGTGGTGGTCAGG	TCAGTGGTGGTCAGG	17: 35,930,628 (GRCm39)		probably benign	Het
Nipbl	T	A	15: 8,340,734 (GRCm39)	R1995S	possibly damaging	Het
Nup35	A	G	2: 80,469,280 (GRCm39)		probably null	Het
Or2o1	A	G	11: 49,051,312 (GRCm39)	D157G	probably damaging	Het
Or6k2	A	G	1: 173,979,411 (GRCm39)		probably benign	Het
Prdm12	A	G	2: 31,532,316 (GRCm39)	K109E	probably damaging	Het
Ptch1	A	T	13: 63,688,626 (GRCm39)	L444Q	probably damaging	Het
Qtrt1	C	T	9: 21,331,392 (GRCm39)	R374*	probably null	Het
Rnase11	T	C	14: 51,287,398 (GRCm39)	D52G	probably damaging	Het
Rps6	A	G	4: 86,774,158 (GRCm39)	S148P	probably benign	Het
Rrm2b	T	C	15: 37,947,044 (GRCm39)	K86E	possibly damaging	Het
Sh2d1b2	A	G	1: 170,075,742 (GRCm39)	K59E	possibly damaging	Het
Six6	T	A	12: 72,987,100 (GRCm39)	W91R	probably damaging	Het
Slc23a2	C	A	2: 131,931,092 (GRCm39)	A136S	possibly damaging	Het
Slc9a5	G	A	8: 106,086,012 (GRCm39)	R593H	probably damaging	Het
Smbd1	T	C	16: 32,630,804 (GRCm39)	M1V	probably null	Het
Ssbp4	T	C	8: 71,051,647 (GRCm39)	Y239C	probably damaging	Het
Stox1	T	C	10: 62,501,345 (GRCm39)	E405G	probably damaging	Het
Tle7	C	T	8: 110,836,735 (GRCm39)	T207M	probably damaging	Het
Tmem192	A	G	8: 65,418,196 (GRCm39)	I194V	probably benign	Het
Tns3	A	T	11: 8,395,667 (GRCm39)	C1246S	probably damaging	Het
Ugt1a6a	A	T	1: 88,066,575 (GRCm39)	Q127L	probably benign	Het
Ush2a	A	G	1: 188,275,025 (GRCm39)	I1833V	probably benign	Het
Vmn2r66	A	T	7: 84,656,093 (GRCm39)	Y308N	probably benign	Het
Vti1a	T	G	19: 55,564,917 (GRCm39)	L191R	probably benign	Het
Zbtb38	A	T	9: 96,570,153 (GRCm39)	N310K	probably benign	Het

Other mutations in Or13a17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00094:Or13a17	APN	7	140,271,349 (GRCm39)	missense	probably damaging	1.00
IGL01434:Or13a17	APN	7	140,271,531 (GRCm39)	missense	probably damaging	1.00
IGL01697:Or13a17	APN	7	140,271,565 (GRCm39)	missense	possibly damaging	0.61
IGL02167:Or13a17	APN	7	140,271,664 (GRCm39)	missense	probably damaging	0.98
IGL02388:Or13a17	APN	7	140,271,024 (GRCm39)	missense	probably benign	0.00
IGL03054:Or13a17	UTSW	7	140,271,623 (GRCm39)	missense	probably benign	0.10
R0107:Or13a17	UTSW	7	140,271,258 (GRCm39)	missense	probably benign
R0403:Or13a17	UTSW	7	140,271,222 (GRCm39)	missense	possibly damaging	0.80
R1344:Or13a17	UTSW	7	140,271,712 (GRCm39)	missense	probably damaging	0.98
R1859:Or13a17	UTSW	7	140,271,571 (GRCm39)	missense	possibly damaging	0.80
R2871:Or13a17	UTSW	7	140,271,198 (GRCm39)	missense	possibly damaging	0.95
R2871:Or13a17	UTSW	7	140,271,198 (GRCm39)	missense	possibly damaging	0.95
R3611:Or13a17	UTSW	7	140,271,013 (GRCm39)	missense	probably benign	0.01
R3915:Or13a17	UTSW	7	140,270,888 (GRCm39)	missense	probably benign
R4551:Or13a17	UTSW	7	140,271,655 (GRCm39)	missense	probably damaging	1.00
R4552:Or13a17	UTSW	7	140,271,655 (GRCm39)	missense	probably damaging	1.00
R4627:Or13a17	UTSW	7	140,271,291 (GRCm39)	missense	probably benign	0.00
R4628:Or13a17	UTSW	7	140,271,291 (GRCm39)	missense	probably benign	0.00
R4629:Or13a17	UTSW	7	140,271,291 (GRCm39)	missense	probably benign	0.00
R4990:Or13a17	UTSW	7	140,271,360 (GRCm39)	missense	probably damaging	0.99
R5503:Or13a17	UTSW	7	140,271,309 (GRCm39)	missense	probably benign	0.01
R7861:Or13a17	UTSW	7	140,271,484 (GRCm39)	missense	probably damaging	1.00
R8268:Or13a17	UTSW	7	140,271,430 (GRCm39)	missense	probably damaging	1.00
R8532:Or13a17	UTSW	7	140,271,712 (GRCm39)	missense	probably damaging	0.98
R8978:Or13a17	UTSW	7	140,271,642 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CTCAGAGCACCCTGATCTAAG -3'
(R):5'- GCACTGATGGACCATACACC -3'

Sequencing Primer
(F):5'- CAGAGCACCCTGATCTAAGATTGTTC -3'
(R):5'- ACATCTGTGGGCTCATCCTAGAG -3'

Posted On

2020-06-30