Mutagenetix > Incidental Mutation

Incidental Mutation 'R8079:Sos2'

629231

Institutional Source

Beutler Lab

Gene Symbol

Sos2

Ensembl Gene

ENSMUSG00000034801

Gene Name

SOS Ras/Rho guanine nucleotide exchange factor 2

Synonyms

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8079 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

69583762-69681852 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 69607215 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 788 (T788A)

Ref Sequence

ENSEMBL: ENSMUSP00000138793 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035773] [ENSMUST00000182396] [ENSMUST00000183277]

AlphaFold

Q02384

PDB Structure

ORIENTATION OF PEPTIDE FRAGMENTS FROM SOS PROTEINS BOUND TO THE N-TERMINAL SH3 DOMAIN OF GRB2 DETERMINED BY NMR SPECTROSCOPY [SOLUTION NMR]

Predicted Effect

probably damaging
Transcript: ENSMUST00000035773
AA Change: T787A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000044866
Gene: ENSMUSG00000034801
AA Change: T787A

Domain	Start	End	E-Value	Type
Pfam:Histone	54	169	3.7e-13	PFAM
RhoGEF	203	388	1.98e-35	SMART
PH	443	547	1.54e-14	SMART
RasGEFN	595	740	5.8e-52	SMART
RasGEF	775	1019	2.51e-92	SMART
low complexity region	1079	1099	N/A	INTRINSIC
low complexity region	1144	1152	N/A	INTRINSIC
low complexity region	1173	1192	N/A	INTRINSIC
low complexity region	1200	1225	N/A	INTRINSIC
low complexity region	1254	1269	N/A	INTRINSIC
low complexity region	1276	1292	N/A	INTRINSIC
low complexity region	1301	1309	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000182396
AA Change: T755A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000138589
Gene: ENSMUSG00000034801
AA Change: T755A

Domain	Start	End	E-Value	Type
Pfam:Histone	97	169	1e-9	PFAM
Pfam:RhoGEF	203	344	1.6e-12	PFAM
PH	410	514	1.54e-14	SMART
RasGEFN	562	707	5.8e-52	SMART
RasGEF	742	986	2.51e-92	SMART
low complexity region	1046	1066	N/A	INTRINSIC
low complexity region	1111	1119	N/A	INTRINSIC
low complexity region	1140	1159	N/A	INTRINSIC
low complexity region	1167	1192	N/A	INTRINSIC
low complexity region	1221	1236	N/A	INTRINSIC
low complexity region	1243	1259	N/A	INTRINSIC
low complexity region	1268	1276	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000183277
AA Change: T788A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000138793
Gene: ENSMUSG00000034801
AA Change: T788A

Domain	Start	End	E-Value	Type
Pfam:Histone	97	169	8.9e-11	PFAM
RhoGEF	203	388	1.98e-35	SMART
PH	443	547	1.54e-14	SMART
RasGEFN	595	740	5.8e-52	SMART
RasGEF	775	1019	2.51e-92	SMART
low complexity region	1079	1099	N/A	INTRINSIC
low complexity region	1144	1152	N/A	INTRINSIC
low complexity region	1173	1192	N/A	INTRINSIC
low complexity region	1200	1225	N/A	INTRINSIC
low complexity region	1254	1269	N/A	INTRINSIC
low complexity region	1276	1292	N/A	INTRINSIC
low complexity region	1301	1309	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 99.0%
20x: 96.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a regulatory protein that is involved in the positive regulation of ras proteins. Mutations in this gene are associated with Noonan Syndrome-9. [provided by RefSeq, Jul 2016]
PHENOTYPE: Mice homozygous for a targeted null mutation exhibit no discernable phenotype; mice are viable and fertile with normal embryonic and adult histopathology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb9	A	G	5: 124,083,123	I255T	possibly damaging	Het
Ablim1	A	T	19: 57,182,224		probably null	Het
Akap10	G	A	11: 61,930,054	P8L	possibly damaging	Het
Ankle2	C	T	5: 110,231,316	A27V	probably damaging	Het
Anxa8	A	G	14: 34,094,812	T246A	probably benign	Het
Arhgap5	A	G	12: 52,567,205	N1460S	probably benign	Het
Arid5b	T	G	10: 68,098,356	D572A	possibly damaging	Het
Atrn	T	A	2: 131,013,641	L1278Q	probably null	Het
AU040320	G	T	4: 126,832,160	K454N	possibly damaging	Het
Baz2b	T	A	2: 59,900,768	R2085W	probably damaging	Het
Bbx	A	T	16: 50,210,458	N649K	probably damaging	Het
BC034090	G	A	1: 155,225,286	P411S	probably damaging	Het
Calcoco2	A	T	11: 96,107,537	F20Y	probably damaging	Het
Carmil2	A	G	8: 105,686,761	R50G	probably damaging	Het
Catspere2	A	G	1: 178,046,959	T131A	probably benign	Het
Cdcp1	C	A	9: 123,173,790	V739L	probably damaging	Het
Chit1	A	G	1: 134,144,027	T92A	possibly damaging	Het
Clstn3	A	G	6: 124,459,804	I185T	probably damaging	Het
Dctpp1	C	A	7: 127,259,389	V61L	probably damaging	Het
Dip2a	T	C	10: 76,287,321	T760A	probably benign	Het
Dock10	C	T	1: 80,578,704	V552I	probably benign	Het
Dpcr1	T	C	17: 35,638,192	T172A	unknown	Het
Dpp8	A	G	9: 65,043,735	E151G	probably damaging	Het
Dvl2	G	C	11: 70,007,518	R367P	possibly damaging	Het
Fem1b	A	T	9: 62,796,361	I539N	probably damaging	Het
Frat2	A	T	19: 41,847,838	L25H	probably damaging	Het
Garnl3	A	T	2: 33,018,499		probably null	Het
Gh	T	C	11: 106,301,427	H47R	possibly damaging	Het
Glmp	T	C	3: 88,325,738	V61A	probably damaging	Het
Gm6614	T	G	6: 141,987,734	M462L	probably benign	Het
Gm9925	T	C	18: 74,065,487	V129A	unknown	Het
H2-M9	T	A	17: 36,642,133	E94V	probably benign	Het
Hira	A	T	16: 18,925,757	Q408L	probably benign	Het
Hook3	A	G	8: 26,088,058		probably null	Het
Ifi206	G	A	1: 173,481,158	P424L		Het
Impdh2	T	C	9: 108,563,325	V270A	probably benign	Het
Klhl14	A	G	18: 21,651,965	I135T	probably benign	Het
Klra10	C	A	6: 130,275,775	V179L	probably benign	Het
Kmt2c	T	C	5: 25,302,732	S3236G	probably damaging	Het
Krt76	G	T	15: 101,888,390	A358D	possibly damaging	Het
Lacc1	C	A	14: 77,029,552	G424C	probably damaging	Het
Limch1	A	G	5: 67,046,753	I878V	possibly damaging	Het
Lipi	C	T	16: 75,565,530		probably null	Het
Lrrc17	C	T	5: 21,561,071	R184W	probably damaging	Het
Mllt10	A	G	2: 18,123,756	N183D	probably damaging	Het
Mterf2	C	T	10: 85,120,163	G199D	probably damaging	Het
Nat8f4	A	T	6: 85,900,994	S182R	probably benign	Het
Ndrg3	C	A	2: 156,937,532	E238*	probably null	Het
Nop14	A	T	5: 34,654,461	L194H	probably damaging	Het
Obscn	T	C	11: 59,081,905	E2105G	possibly damaging	Het
Olfr1009	A	T	2: 85,722,043	T213S	probably benign	Het
Olfr1079	T	A	2: 86,538,381	H176L	possibly damaging	Het
Olfr1457	A	C	19: 13,095,284	Y121*	probably null	Het
Olfr829	A	T	9: 18,857,429	Y259F	possibly damaging	Het
Pbx3	C	T	2: 34,178,228	A320T	probably benign	Het
Pcdhac2	A	T	18: 37,146,144	S726C	probably damaging	Het
Pcdhgb2	A	G	18: 37,690,763	D269G	probably damaging	Het
Pcgf6	A	T	19: 47,045,832	S257T	probably damaging	Het
Pclo	A	T	5: 14,540,458	H924L	unknown	Het
Per3	T	A	4: 151,042,678	T129S	possibly damaging	Het
Pi4ka	A	T	16: 17,303,060	M1270K		Het
Plec	G	A	15: 76,179,550	Q2277*	probably null	Het
Pnma1	T	A	12: 84,147,335	K198M	probably damaging	Het
Prc1	T	A	7: 80,304,767	F196L	possibly damaging	Het
Prkcz	T	C	4: 155,357,505	T57A	probably damaging	Het
Repin1	G	T	6: 48,597,345	E403*	probably null	Het
Robo4	A	G	9: 37,402,635	M61V	possibly damaging	Het
Rps12	C	T	10: 23,785,677	V79I	probably benign	Het
Rsph3a	A	G	17: 7,979,188	K466E	probably benign	Het
Scly	A	T	1: 91,308,367	I168F	probably damaging	Het
Setd1a	T	A	7: 127,785,053	F359I	unknown	Het
Sh3tc1	A	G	5: 35,706,857	L662P	possibly damaging	Het
Slc12a5	T	C	2: 164,992,452	W798R	probably damaging	Het
Slc16a6	C	T	11: 109,473,455	R13Q	unknown	Het
Smarcad1	A	G	6: 65,052,782	D118G	possibly damaging	Het
Syvn1	A	G	19: 6,048,366	E75G	probably null	Het
Thpo	T	C	16: 20,726,394	E103G	probably benign	Het
Trav7d-3	A	T	14: 52,744,736	E78V	possibly damaging	Het
Uap1	A	G	1: 170,158,763	S217P	probably damaging	Het
Unc45a	T	G	7: 80,331,562	R497S	probably damaging	Het
Upf1	A	G	8: 70,338,884		probably null	Het
Usp47	A	T	7: 112,046,970	K28M	probably damaging	Het
Wdr72	A	C	9: 74,218,772	T1062P	probably damaging	Het
Wnt7b	A	T	15: 85,537,445	C339S	probably damaging	Het
Zfp954	G	T	7: 7,115,471	T358K	probably benign	Het
Zmynd15	G	T	11: 70,459,452		probably benign	Het

Other mutations in Sos2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01138:Sos2	APN	12	69616849	splice site	probably benign
IGL01348:Sos2	APN	12	69618092	missense	probably damaging	0.99
IGL01360:Sos2	APN	12	69590800	missense	probably benign	0.00
IGL01586:Sos2	APN	12	69607398	missense	probably damaging	1.00
IGL01721:Sos2	APN	12	69603867	missense	probably damaging	0.99
IGL02024:Sos2	APN	12	69618048	splice site	probably benign
IGL02347:Sos2	APN	12	69596746	missense	probably benign
IGL02419:Sos2	APN	12	69616990	missense	probably benign
IGL02684:Sos2	APN	12	69596666	missense	probably damaging	1.00
IGL02719:Sos2	APN	12	69617184	missense	probably benign	0.00
IGL03099:Sos2	APN	12	69616359	missense	probably damaging	1.00
Bechamel	UTSW	12	69603553	missense	probably damaging	1.00
sauce	UTSW	12	69596795	missense	probably damaging	1.00
G1citation:Sos2	UTSW	12	69650649	missense	probably damaging	1.00
PIT4131001:Sos2	UTSW	12	69618077	missense	probably benign
R0038:Sos2	UTSW	12	69596693	missense	probably damaging	1.00
R0233:Sos2	UTSW	12	69617330	missense	probably benign	0.00
R0233:Sos2	UTSW	12	69617330	missense	probably benign	0.00
R0326:Sos2	UTSW	12	69635685	missense	probably damaging	1.00
R1386:Sos2	UTSW	12	69614658	missense	probably damaging	1.00
R1472:Sos2	UTSW	12	69585316	splice site	probably null
R1534:Sos2	UTSW	12	69616955	missense	probably damaging	1.00
R1861:Sos2	UTSW	12	69617363	missense	probably damaging	1.00
R1934:Sos2	UTSW	12	69648541	missense	probably damaging	0.99
R1964:Sos2	UTSW	12	69616862	missense	possibly damaging	0.51
R2402:Sos2	UTSW	12	69596799	missense	possibly damaging	0.95
R2516:Sos2	UTSW	12	69650659	missense	probably damaging	0.99
R2571:Sos2	UTSW	12	69635718	missense	possibly damaging	0.95
R3423:Sos2	UTSW	12	69603553	missense	probably damaging	1.00
R4435:Sos2	UTSW	12	69614699	missense	possibly damaging	0.79
R4508:Sos2	UTSW	12	69635661	nonsense	probably null
R4595:Sos2	UTSW	12	69616889	missense	probably damaging	1.00
R4606:Sos2	UTSW	12	69614606	intron	probably benign
R4691:Sos2	UTSW	12	69616328	missense	probably damaging	1.00
R4716:Sos2	UTSW	12	69607371	missense	probably benign	0.04
R4863:Sos2	UTSW	12	69640154	missense	probably benign	0.04
R5179:Sos2	UTSW	12	69650728	nonsense	probably null
R5319:Sos2	UTSW	12	69627284	missense	probably benign	0.22
R5694:Sos2	UTSW	12	69590915	missense	probably damaging	0.96
R5877:Sos2	UTSW	12	69596795	missense	probably damaging	1.00
R6363:Sos2	UTSW	12	69632111	missense	probably benign	0.00
R6465:Sos2	UTSW	12	69596775	missense	probably benign	0.01
R6817:Sos2	UTSW	12	69618161	missense	probably benign	0.32
R6822:Sos2	UTSW	12	69650649	missense	probably damaging	1.00
R7015:Sos2	UTSW	12	69585235	missense	probably benign	0.43
R7562:Sos2	UTSW	12	69635638	missense	probably benign	0.12
R7570:Sos2	UTSW	12	69590880	missense	probably damaging	1.00
R7757:Sos2	UTSW	12	69648585	missense	probably damaging	0.99
R7975:Sos2	UTSW	12	69593040	missense	probably benign	0.20
R8194:Sos2	UTSW	12	69598824	missense	probably damaging	1.00
R8756:Sos2	UTSW	12	69648536	missense	probably damaging	1.00
R8775:Sos2	UTSW	12	69617232	missense	probably benign	0.02
R8775-TAIL:Sos2	UTSW	12	69617232	missense	probably benign	0.02
R9136:Sos2	UTSW	12	69586672	missense	possibly damaging	0.95
R9245:Sos2	UTSW	12	69648465	missense	probably damaging	1.00
Z1177:Sos2	UTSW	12	69585592	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCCAGGAATCTCTCAACCTC -3'
(R):5'- CCTCTAGGGAAAGCCATGAAG -3'

Sequencing Primer
(F):5'- CCAGACTGATTGACTTAATCTCAGAC -3'
(R):5'- CCTCTAGGGAAAGCCATGAAGAAATG -3'

Posted On

2020-06-30