Incidental Mutation 'R8084:Cacna2d4'
ID 629511
Institutional Source Beutler Lab
Gene Symbol Cacna2d4
Ensembl Gene ENSMUSG00000041460
Gene Name calcium channel, voltage-dependent, alpha 2/delta subunit 4
Synonyms 5730412N02Rik
MMRRC Submission 067517-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R8084 (G1)
Quality Score 225.009
Status Validated
Chromosome 6
Chromosomal Location 119213487-119329368 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 119277313 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 675 (D675E)
Ref Sequence ENSEMBL: ENSMUSP00000140197 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000037434] [ENSMUST00000186622]
AlphaFold Q5RJF7
Predicted Effect probably benign
Transcript: ENSMUST00000037434
AA Change: D700E

PolyPhen 2 Score 0.423 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000044660
Gene: ENSMUSG00000041460
AA Change: D700E

DomainStartEndE-ValueType
Blast:WNT1 79 144 1e-13 BLAST
Pfam:VWA_N 155 271 7.3e-40 PFAM
VWA 296 481 4.37e-14 SMART
Pfam:Cache_1 494 586 1.1e-24 PFAM
low complexity region 837 849 N/A INTRINSIC
low complexity region 975 984 N/A INTRINSIC
low complexity region 1000 1011 N/A INTRINSIC
low complexity region 1120 1143 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000186622
AA Change: D675E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000140197
Gene: ENSMUSG00000041460
AA Change: D675E

DomainStartEndE-ValueType
Blast:WNT1 79 144 1e-13 BLAST
Pfam:VWA_N 155 271 6.4e-44 PFAM
VWA 296 481 2.7e-16 SMART
Pfam:Cache_1 494 559 1.1e-7 PFAM
low complexity region 812 824 N/A INTRINSIC
low complexity region 950 959 N/A INTRINSIC
low complexity region 975 986 N/A INTRINSIC
low complexity region 1095 1118 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.8%
  • 3x: 99.7%
  • 10x: 98.9%
  • 20x: 96.2%
Validation Efficiency 100% (75/75)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the alpha-2/delta subunit family, a protein in the voltage-dependent calcium channel complex. Calcium channels mediate the influx of calcium ions into the cell upon membrane polarization and consist of a complex of alpha-1, alpha-2/delta, beta, and gamma subunits in a 1:1:1:1 ratio. Various versions of each of these subunits exist, either expressed from similar genes or the result of alternative splicing. Research on a highly similar protein in rabbit suggests the protein described in this record is cleaved into alpha-2 and delta subunits. Alternate transcriptional splice variants of this gene have been observed but have not been thoroughly characterized. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a spontaneous mutation exhibit severe loss of retinal signaling associated with abnormal photoreceptor ribbon synapses and cone-rod dysfunction. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 71 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca2 T A 2: 25,323,979 (GRCm39) Y190N probably benign Het
Acsl3 G A 1: 78,669,844 (GRCm39) D238N probably damaging Het
Acss1 T A 2: 150,484,701 (GRCm39) I181F probably damaging Het
Ano5 A G 7: 51,229,287 (GRCm39) I610V probably benign Het
Anxa6 A T 11: 54,894,834 (GRCm39) F256I probably damaging Het
Ash2l A G 8: 26,321,322 (GRCm39) S273P probably benign Het
Baz2b T G 2: 59,792,580 (GRCm39) E516A probably benign Het
Bbs2 G T 8: 94,814,056 (GRCm39) D187E probably damaging Het
Cacna1b T A 2: 24,575,808 (GRCm39) M747L probably benign Het
Calcr G A 6: 3,687,615 (GRCm39) T461M probably benign Het
Catip A G 1: 74,403,515 (GRCm39) K126E probably damaging Het
Chga T C 12: 102,528,328 (GRCm39) I273T probably benign Het
Clasp2 G A 9: 113,676,823 (GRCm39) V185I probably benign Het
Cracr2a A G 6: 127,616,135 (GRCm39) N370S probably benign Het
Crygc A T 1: 65,110,981 (GRCm39) V102D probably benign Het
Ddx23 A G 15: 98,556,145 (GRCm39) S58P unknown Het
Dlgap5 C T 14: 47,645,298 (GRCm39) G281D probably benign Het
Dnah5 A T 15: 28,388,099 (GRCm39) Y3186F probably damaging Het
Dpp6 A C 5: 27,836,397 (GRCm39) I296L probably benign Het
Elfn2 C T 15: 78,556,660 (GRCm39) R629H probably damaging Het
Eml2 G T 7: 18,915,149 (GRCm39) probably null Het
Fitm1 T A 14: 55,813,906 (GRCm39) V134E probably damaging Het
Flnb A G 14: 7,907,243 (GRCm38) N1272S probably benign Het
Fuca1 G A 4: 135,662,114 (GRCm39) W347* probably null Het
Gabbr2 C T 4: 46,736,349 (GRCm39) probably null Het
Gls2 G A 10: 128,035,125 (GRCm39) R86H probably damaging Het
Grin2b T C 6: 135,710,486 (GRCm39) K1020R probably benign Het
H2-DMb1 T A 17: 34,376,327 (GRCm39) W149R probably damaging Het
Herc1 T A 9: 66,383,217 (GRCm39) S3629R probably benign Het
Itih4 A T 14: 30,621,400 (GRCm39) N821I possibly damaging Het
Kmt2d A T 15: 98,739,945 (GRCm39) L4731Q unknown Het
Loxhd1 A T 18: 77,427,845 (GRCm39) I472F possibly damaging Het
Lrp2 C A 2: 69,339,713 (GRCm39) C1066F probably damaging Het
Mllt10 T A 2: 18,114,637 (GRCm39) F114I probably damaging Het
N4bp1 T C 8: 87,587,636 (GRCm39) E434G probably benign Het
N6amt1 T C 16: 87,151,228 (GRCm39) F30L probably damaging Het
Naca G A 10: 127,877,400 (GRCm39) V811I unknown Het
Nobox A C 6: 43,282,101 (GRCm39) I324S possibly damaging Het
Nup210l T C 3: 90,043,365 (GRCm39) S442P probably benign Het
Or6c2 A T 10: 129,362,809 (GRCm39) T238S probably damaging Het
Osbpl1a A T 18: 13,038,099 (GRCm39) L284Q probably damaging Het
Pals1 A T 12: 78,867,625 (GRCm39) Q336L probably benign Het
Pcdhb20 A C 18: 37,639,226 (GRCm39) Y584S possibly damaging Het
Pgpep1l A T 7: 67,887,519 (GRCm39) F27Y probably benign Het
Pik3cg T G 12: 32,245,687 (GRCm39) I854L probably benign Het
Pot1a C T 6: 25,771,535 (GRCm39) V229M possibly damaging Het
Prh1 C T 6: 132,548,822 (GRCm39) P110S unknown Het
Prkag3 C T 1: 74,786,366 (GRCm39) C193Y probably damaging Het
Prl2c5 T C 13: 13,360,539 (GRCm39) F69L probably benign Het
Ptprq T C 10: 107,444,294 (GRCm39) T1437A probably benign Het
Rabgap1 T C 2: 37,427,317 (GRCm39) Y633H probably damaging Het
Rad54l2 G A 9: 106,590,701 (GRCm39) T475I possibly damaging Het
Retreg1 C A 15: 25,969,885 (GRCm39) A130E probably benign Het
Rps6kb1 G T 11: 86,426,262 (GRCm39) H56N probably benign Het
Sars2 A G 7: 28,449,710 (GRCm39) H385R probably damaging Het
Sbpl T G 17: 24,172,244 (GRCm39) N225T unknown Het
Scml4 T C 10: 42,806,602 (GRCm39) probably null Het
Scrib G A 15: 75,937,940 (GRCm39) T302M probably benign Het
Sdk2 G A 11: 113,717,915 (GRCm39) T1483I possibly damaging Het
Sh3bgrl3 A G 4: 133,855,390 (GRCm39) S19P probably damaging Het
Slc10a6 C T 5: 103,760,327 (GRCm39) V223I probably benign Het
Slc4a3 A G 1: 75,532,589 (GRCm39) T950A probably benign Het
Spats2 A T 15: 99,064,961 (GRCm39) D9V possibly damaging Het
Sphk1 A T 11: 116,425,904 (GRCm39) probably null Het
Tex10 A T 4: 48,431,066 (GRCm39) S897R probably benign Het
Tmco3 T C 8: 13,353,873 (GRCm39) V395A probably damaging Het
Ttc7b A G 12: 100,350,432 (GRCm39) L478P probably damaging Het
Ubac2 T C 14: 122,220,717 (GRCm39) M184T probably benign Het
Wdr95 T C 5: 149,511,598 (GRCm39) S433P probably damaging Het
Zfp202 T A 9: 40,122,538 (GRCm39) H433Q probably benign Het
Zfp526 G T 7: 24,924,737 (GRCm39) R332L probably damaging Het
Other mutations in Cacna2d4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00391:Cacna2d4 APN 6 119,314,894 (GRCm39) splice site probably benign
IGL00469:Cacna2d4 APN 6 119,245,239 (GRCm39) missense probably damaging 1.00
IGL00518:Cacna2d4 APN 6 119,320,536 (GRCm39) missense probably damaging 1.00
IGL00946:Cacna2d4 APN 6 119,248,876 (GRCm39) missense possibly damaging 0.82
IGL01447:Cacna2d4 APN 6 119,219,865 (GRCm39) missense probably damaging 1.00
IGL01514:Cacna2d4 APN 6 119,259,134 (GRCm39) splice site probably benign
IGL01576:Cacna2d4 APN 6 119,258,602 (GRCm39) nonsense probably null
IGL01934:Cacna2d4 APN 6 119,285,729 (GRCm39) missense probably damaging 1.00
IGL02231:Cacna2d4 APN 6 119,254,869 (GRCm39) splice site probably benign
IGL02516:Cacna2d4 APN 6 119,248,831 (GRCm39) splice site probably benign
IGL02688:Cacna2d4 APN 6 119,247,710 (GRCm39) splice site probably null
IGL03110:Cacna2d4 APN 6 119,213,698 (GRCm39) missense probably benign 0.05
IGL03365:Cacna2d4 APN 6 119,248,225 (GRCm39) missense probably benign 0.15
saccharine UTSW 6 119,322,067 (GRCm39) splice site probably benign
Steveo UTSW 6 119,324,213 (GRCm39) critical splice donor site probably null
Sussmann UTSW 6 119,251,279 (GRCm39) missense probably damaging 1.00
R0139:Cacna2d4 UTSW 6 119,255,230 (GRCm39) intron probably benign
R0157:Cacna2d4 UTSW 6 119,289,385 (GRCm39) missense probably benign 0.00
R0158:Cacna2d4 UTSW 6 119,213,709 (GRCm39) missense possibly damaging 0.68
R0245:Cacna2d4 UTSW 6 119,285,682 (GRCm39) missense probably damaging 1.00
R0612:Cacna2d4 UTSW 6 119,258,679 (GRCm39) splice site probably benign
R0659:Cacna2d4 UTSW 6 119,322,067 (GRCm39) splice site probably benign
R0722:Cacna2d4 UTSW 6 119,284,247 (GRCm39) missense probably damaging 1.00
R0743:Cacna2d4 UTSW 6 119,284,247 (GRCm39) missense probably damaging 1.00
R0833:Cacna2d4 UTSW 6 119,284,247 (GRCm39) missense probably damaging 1.00
R0835:Cacna2d4 UTSW 6 119,284,247 (GRCm39) missense probably damaging 1.00
R0836:Cacna2d4 UTSW 6 119,284,247 (GRCm39) missense probably damaging 1.00
R0884:Cacna2d4 UTSW 6 119,284,247 (GRCm39) missense probably damaging 1.00
R1052:Cacna2d4 UTSW 6 119,277,294 (GRCm39) missense probably damaging 1.00
R1168:Cacna2d4 UTSW 6 119,284,247 (GRCm39) missense probably damaging 1.00
R1170:Cacna2d4 UTSW 6 119,284,247 (GRCm39) missense probably damaging 1.00
R1451:Cacna2d4 UTSW 6 119,213,785 (GRCm39) missense probably benign 0.01
R1564:Cacna2d4 UTSW 6 119,218,156 (GRCm39) missense possibly damaging 0.67
R1809:Cacna2d4 UTSW 6 119,247,785 (GRCm39) missense probably damaging 0.99
R1936:Cacna2d4 UTSW 6 119,247,722 (GRCm39) missense possibly damaging 0.82
R2078:Cacna2d4 UTSW 6 119,315,077 (GRCm39) missense probably benign 0.02
R2198:Cacna2d4 UTSW 6 119,324,220 (GRCm39) splice site probably benign
R2280:Cacna2d4 UTSW 6 119,327,002 (GRCm39) missense possibly damaging 0.85
R3757:Cacna2d4 UTSW 6 119,218,124 (GRCm39) missense probably damaging 0.98
R3975:Cacna2d4 UTSW 6 119,255,134 (GRCm39) splice site probably null
R3976:Cacna2d4 UTSW 6 119,255,134 (GRCm39) splice site probably null
R4238:Cacna2d4 UTSW 6 119,217,669 (GRCm39) missense probably null 1.00
R4591:Cacna2d4 UTSW 6 119,275,425 (GRCm39) missense probably benign 0.02
R4856:Cacna2d4 UTSW 6 119,255,217 (GRCm39) missense possibly damaging 0.90
R4899:Cacna2d4 UTSW 6 119,245,157 (GRCm39) nonsense probably null
R5319:Cacna2d4 UTSW 6 119,324,213 (GRCm39) critical splice donor site probably null
R5351:Cacna2d4 UTSW 6 119,245,162 (GRCm39) missense probably damaging 1.00
R5366:Cacna2d4 UTSW 6 119,251,279 (GRCm39) missense probably damaging 1.00
R5393:Cacna2d4 UTSW 6 119,216,015 (GRCm39) missense probably benign 0.20
R5395:Cacna2d4 UTSW 6 119,248,379 (GRCm39) missense possibly damaging 0.71
R5408:Cacna2d4 UTSW 6 119,325,752 (GRCm39) missense probably damaging 1.00
R5603:Cacna2d4 UTSW 6 119,221,246 (GRCm39) missense probably damaging 1.00
R5661:Cacna2d4 UTSW 6 119,320,492 (GRCm39) missense probably benign
R5898:Cacna2d4 UTSW 6 119,251,192 (GRCm39) missense probably damaging 1.00
R5928:Cacna2d4 UTSW 6 119,258,659 (GRCm39) missense probably benign 0.06
R6186:Cacna2d4 UTSW 6 119,258,650 (GRCm39) missense possibly damaging 0.94
R6218:Cacna2d4 UTSW 6 119,216,021 (GRCm39) missense probably damaging 0.99
R6257:Cacna2d4 UTSW 6 119,258,580 (GRCm39) critical splice acceptor site probably null
R6409:Cacna2d4 UTSW 6 119,259,189 (GRCm39) missense probably damaging 0.99
R6931:Cacna2d4 UTSW 6 119,259,195 (GRCm39) missense possibly damaging 0.49
R7221:Cacna2d4 UTSW 6 119,213,624 (GRCm39) missense probably benign 0.02
R7363:Cacna2d4 UTSW 6 119,320,939 (GRCm39) missense probably damaging 1.00
R7371:Cacna2d4 UTSW 6 119,285,670 (GRCm39) missense probably benign 0.07
R7382:Cacna2d4 UTSW 6 119,216,048 (GRCm39) missense probably damaging 1.00
R7431:Cacna2d4 UTSW 6 119,221,237 (GRCm39) missense probably damaging 0.98
R7517:Cacna2d4 UTSW 6 119,248,882 (GRCm39) missense probably benign 0.01
R7527:Cacna2d4 UTSW 6 119,248,208 (GRCm39) missense probably benign 0.00
R7529:Cacna2d4 UTSW 6 119,247,727 (GRCm39) missense probably benign 0.01
R7710:Cacna2d4 UTSW 6 119,251,200 (GRCm39) missense probably benign 0.05
R7880:Cacna2d4 UTSW 6 119,326,116 (GRCm39) missense probably damaging 0.99
R8007:Cacna2d4 UTSW 6 119,289,405 (GRCm39) missense probably benign
R8159:Cacna2d4 UTSW 6 119,274,488 (GRCm39) missense probably benign 0.01
R8391:Cacna2d4 UTSW 6 119,325,706 (GRCm39) missense probably benign 0.04
R8700:Cacna2d4 UTSW 6 119,258,654 (GRCm39) missense probably damaging 1.00
R8857:Cacna2d4 UTSW 6 119,248,909 (GRCm39) nonsense probably null
R8973:Cacna2d4 UTSW 6 119,218,142 (GRCm39) missense probably damaging 1.00
R8976:Cacna2d4 UTSW 6 119,315,118 (GRCm39) missense possibly damaging 0.79
R8998:Cacna2d4 UTSW 6 119,219,876 (GRCm39) missense possibly damaging 0.90
R9129:Cacna2d4 UTSW 6 119,313,415 (GRCm39) critical splice donor site probably null
R9199:Cacna2d4 UTSW 6 119,244,787 (GRCm39) missense probably benign 0.12
R9228:Cacna2d4 UTSW 6 119,248,476 (GRCm39) missense probably benign 0.07
R9310:Cacna2d4 UTSW 6 119,248,914 (GRCm39) critical splice donor site probably null
R9315:Cacna2d4 UTSW 6 119,213,670 (GRCm39) missense probably benign
R9335:Cacna2d4 UTSW 6 119,279,014 (GRCm39) missense probably damaging 1.00
R9416:Cacna2d4 UTSW 6 119,274,479 (GRCm39) missense probably benign 0.06
R9514:Cacna2d4 UTSW 6 119,213,611 (GRCm39) missense probably benign
R9600:Cacna2d4 UTSW 6 119,322,023 (GRCm39) missense probably benign 0.02
RF023:Cacna2d4 UTSW 6 119,245,191 (GRCm39) missense probably benign 0.19
Z1176:Cacna2d4 UTSW 6 119,289,411 (GRCm39) missense probably benign 0.23
Predicted Primers PCR Primer
(F):5'- ACAGGGTATCAGCCTGAGTG -3'
(R):5'- ATTCTGGGTGCCCACATTCC -3'

Sequencing Primer
(F):5'- GTGGACTCTGCTTTCAGGCC -3'
(R):5'- GGTGCCCACATTCCACATG -3'
Posted On 2020-06-30