Incidental Mutation 'R0707:Dicer1'
| ID |
63189 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dicer1
|
| Ensembl Gene |
ENSMUSG00000041415 |
| Gene Name |
dicer 1, ribonuclease type III |
| Synonyms |
D12Ertd7e |
| MMRRC Submission |
038890-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R0707 (G1)
|
| Quality Score |
91 |
|
Status
|
Validated
|
| Chromosome |
12 |
| Chromosomal Location |
104687742-104751952 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 104706885 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Phenylalanine to Isoleucine
at position 792
(F792I)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000043676
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000041987]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000041987
AA Change: F792I
PolyPhen 2
Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
|
| SMART Domains |
Protein: ENSMUSP00000043676
Gene: ENSMUSG00000041415
AA Change: F792I
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
30 |
233 |
5.14e-24 |
SMART |
|
low complexity region
|
403 |
419 |
N/A |
INTRINSIC |
|
HELICc
|
449 |
546 |
3.15e-10 |
SMART |
|
Pfam:Dicer_dimer
|
620 |
707 |
1.4e-25 |
PFAM |
|
low complexity region
|
713 |
723 |
N/A |
INTRINSIC |
|
PAZ
|
881 |
1056 |
1.67e-48 |
SMART |
|
Blast:PAZ
|
1080 |
1129 |
2e-8 |
BLAST |
|
RIBOc
|
1285 |
1582 |
1.83e-35 |
SMART |
|
RIBOc
|
1665 |
1831 |
5.97e-49 |
SMART |
|
DSRM
|
1834 |
1897 |
6.89e-9 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000222528
|
| Meta Mutation Damage Score |
0.7347 |
| Coding Region Coverage |
- 1x: 99.4%
- 3x: 98.9%
- 10x: 97.7%
- 20x: 96.1%
|
| Validation Efficiency |
100% (74/74) |
| MGI Phenotype |
Strain: 3589209; 3809262; 2681012; 3576927
Lethality: E7-E14
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein possessing an RNA helicase motif containing a DEXH box in its amino terminus and an RNA motif in the carboxy terminus. The encoded protein functions as a ribonuclease and is required by the RNA interference and small temporal RNA (stRNA) pathways to produce the active small RNA component that represses gene expression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2010]
PHENOTYPE: Mutation of this locus results in arrest of early embryonic development. [provided by MGI curators]
|
| Allele List at MGI |
All alleles(25) : Targeted(14) Gene trapped(11)
|
| Other mutations in this stock |
Total: 71 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acot11 |
A |
G |
4: 106,760,132 (GRCm38) |
F259S |
probably damaging |
Het |
| Aldh16a1 |
T |
A |
7: 45,144,507 (GRCm38) |
|
probably benign |
Het |
| Ankrd24 |
A |
T |
10: 81,642,713 (GRCm38) |
|
probably benign |
Het |
| Arhgap5 |
T |
C |
12: 52,518,168 (GRCm38) |
S641P |
probably damaging |
Het |
| Arpp21 |
A |
C |
9: 112,157,756 (GRCm38) |
S242R |
probably benign |
Het |
| Bpifb5 |
A |
G |
2: 154,228,900 (GRCm38) |
T204A |
probably benign |
Het |
| Bud31 |
A |
G |
5: 145,146,455 (GRCm38) |
Y77C |
probably damaging |
Het |
| Ccdc65 |
G |
A |
15: 98,709,214 (GRCm38) |
V101I |
possibly damaging |
Het |
| Ccr7 |
T |
A |
11: 99,145,983 (GRCm38) |
T38S |
probably damaging |
Het |
| Cdc14a |
T |
C |
3: 116,293,713 (GRCm38) |
|
probably benign |
Het |
| Ces2f |
C |
T |
8: 104,950,986 (GRCm38) |
H208Y |
possibly damaging |
Het |
| Chst1 |
C |
A |
2: 92,613,619 (GRCm38) |
N145K |
possibly damaging |
Het |
| Clock |
A |
G |
5: 76,227,129 (GRCm38) |
V731A |
possibly damaging |
Het |
| Cog6 |
C |
T |
3: 53,013,862 (GRCm38) |
V108I |
possibly damaging |
Het |
| Cplane1 |
T |
A |
15: 8,258,321 (GRCm38) |
N2881K |
unknown |
Het |
| Crtc2 |
T |
A |
3: 90,263,497 (GRCm38) |
F626I |
probably damaging |
Het |
| Dnajc13 |
T |
C |
9: 104,172,582 (GRCm38) |
K1780R |
probably benign |
Het |
| Dph5 |
A |
C |
3: 115,915,133 (GRCm38) |
N155H |
probably benign |
Het |
| Dscam |
T |
C |
16: 96,825,782 (GRCm38) |
|
probably null |
Het |
| Etl4 |
C |
A |
2: 20,805,571 (GRCm38) |
|
probably benign |
Het |
| Flt3l |
T |
C |
7: 45,136,026 (GRCm38) |
S9G |
probably benign |
Het |
| Fmnl2 |
A |
G |
2: 53,054,486 (GRCm38) |
E159G |
possibly damaging |
Het |
| Fryl |
A |
G |
5: 73,083,372 (GRCm38) |
I1295T |
probably benign |
Het |
| G530012D18Rik |
CAGAGAGA |
CAGAGAGAGA |
1: 85,577,224 (GRCm38) |
|
probably null |
Het |
| Gatad2b |
T |
A |
3: 90,356,182 (GRCm38) |
S529T |
probably benign |
Het |
| Herc6 |
G |
A |
6: 57,662,362 (GRCm38) |
G905E |
possibly damaging |
Het |
| Hhip |
T |
A |
8: 79,998,255 (GRCm38) |
N296I |
probably damaging |
Het |
| Hmgcr |
A |
T |
13: 96,650,643 (GRCm38) |
|
probably benign |
Het |
| Kalrn |
T |
G |
16: 34,010,581 (GRCm38) |
N723H |
possibly damaging |
Het |
| Mroh5 |
T |
A |
15: 73,790,739 (GRCm38) |
Y242F |
possibly damaging |
Het |
| Msh3 |
T |
A |
13: 92,347,340 (GRCm38) |
K258* |
probably null |
Het |
| Myo1a |
T |
C |
10: 127,719,863 (GRCm38) |
|
probably benign |
Het |
| Nlrp4f |
C |
T |
13: 65,194,503 (GRCm38) |
E443K |
probably benign |
Het |
| Nupr2 |
A |
G |
5: 129,908,692 (GRCm38) |
Y34C |
probably damaging |
Het |
| Ociad1 |
T |
C |
5: 73,294,912 (GRCm38) |
|
probably benign |
Het |
| Or1af1 |
A |
T |
2: 37,220,196 (GRCm38) |
K236* |
probably null |
Het |
| Or5af2 |
T |
A |
11: 58,817,751 (GRCm38) |
L248M |
probably damaging |
Het |
| Or5b3 |
A |
T |
19: 13,411,420 (GRCm38) |
M284L |
probably benign |
Het |
| Or5p5 |
A |
G |
7: 107,815,124 (GRCm38) |
D182G |
probably damaging |
Het |
| Or6ae1 |
T |
C |
7: 140,162,089 (GRCm38) |
N287S |
probably damaging |
Het |
| P2ry12 |
C |
A |
3: 59,217,487 (GRCm38) |
V256F |
probably damaging |
Het |
| Pcdhb22 |
T |
A |
18: 37,518,851 (GRCm38) |
I124N |
probably damaging |
Het |
| Pcnt |
A |
G |
10: 76,420,541 (GRCm38) |
F622L |
probably damaging |
Het |
| Pfas |
A |
T |
11: 68,998,037 (GRCm38) |
N361K |
probably benign |
Het |
| Plod2 |
T |
G |
9: 92,605,427 (GRCm38) |
L600V |
possibly damaging |
Het |
| Pole |
T |
C |
5: 110,298,988 (GRCm38) |
Y631H |
probably damaging |
Het |
| Proser1 |
T |
C |
3: 53,478,776 (GRCm38) |
L693P |
probably damaging |
Het |
| Ptprd |
A |
G |
4: 75,957,239 (GRCm38) |
Y1195H |
probably damaging |
Het |
| Rbm27 |
T |
A |
18: 42,326,026 (GRCm38) |
|
probably null |
Het |
| Ric8a |
A |
G |
7: 140,857,973 (GRCm38) |
|
probably benign |
Het |
| Rif1 |
GCCACCA |
GCCA |
2: 52,110,324 (GRCm38) |
|
probably benign |
Het |
| Rimkla |
C |
T |
4: 119,477,980 (GRCm38) |
V69M |
probably damaging |
Het |
| Scfd1 |
A |
T |
12: 51,412,577 (GRCm38) |
K307M |
probably damaging |
Het |
| Sh2b2 |
A |
G |
5: 136,232,263 (GRCm38) |
F33S |
probably damaging |
Het |
| Smg7 |
T |
G |
1: 152,870,757 (GRCm38) |
|
probably null |
Het |
| Srebf1 |
T |
C |
11: 60,204,116 (GRCm38) |
T486A |
probably benign |
Het |
| Strn3 |
G |
A |
12: 51,610,404 (GRCm38) |
T642I |
probably damaging |
Het |
| Syne2 |
T |
C |
12: 75,982,063 (GRCm38) |
|
probably null |
Het |
| Syne3 |
A |
G |
12: 104,969,360 (GRCm38) |
L53P |
probably damaging |
Het |
| Tcea1 |
T |
A |
1: 4,880,346 (GRCm38) |
|
probably benign |
Het |
| Tmem30b |
T |
C |
12: 73,546,168 (GRCm38) |
N58D |
probably benign |
Het |
| Tnpo1 |
A |
G |
13: 98,855,446 (GRCm38) |
Y641H |
probably damaging |
Het |
| Trim25 |
A |
T |
11: 88,999,738 (GRCm38) |
T84S |
probably benign |
Het |
| Trip4 |
A |
T |
9: 65,839,004 (GRCm38) |
F537I |
possibly damaging |
Het |
| Uaca |
G |
A |
9: 60,848,618 (GRCm38) |
|
probably benign |
Het |
| Ugt2b34 |
T |
A |
5: 86,892,899 (GRCm38) |
Y388F |
possibly damaging |
Het |
| Vmn2r71 |
T |
C |
7: 85,619,432 (GRCm38) |
V281A |
probably benign |
Het |
| Vps13d |
A |
T |
4: 145,155,932 (GRCm38) |
D1030E |
probably damaging |
Het |
| Vps8 |
C |
A |
16: 21,442,357 (GRCm38) |
F82L |
probably damaging |
Het |
| Zfp296 |
A |
G |
7: 19,579,736 (GRCm38) |
D172G |
probably benign |
Het |
| Zfp977 |
C |
A |
7: 42,580,534 (GRCm38) |
C189F |
probably damaging |
Het |
|
| Other mutations in Dicer1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00943:Dicer1
|
APN |
12 |
104,696,772 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
IGL01061:Dicer1
|
APN |
12 |
104,706,327 (GRCm38) |
missense |
probably null |
0.75 |
|
IGL01527:Dicer1
|
APN |
12 |
104,691,610 (GRCm38) |
nonsense |
probably null |
|
|
IGL01597:Dicer1
|
APN |
12 |
104,705,210 (GRCm38) |
nonsense |
probably null |
|
|
IGL01636:Dicer1
|
APN |
12 |
104,722,241 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01717:Dicer1
|
APN |
12 |
104,702,787 (GRCm38) |
nonsense |
probably null |
|
|
IGL01765:Dicer1
|
APN |
12 |
104,706,740 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01871:Dicer1
|
APN |
12 |
104,704,180 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02316:Dicer1
|
APN |
12 |
104,702,553 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02317:Dicer1
|
APN |
12 |
104,697,020 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02539:Dicer1
|
APN |
12 |
104,697,035 (GRCm38) |
missense |
probably damaging |
0.97 |
|
IGL02544:Dicer1
|
APN |
12 |
104,714,832 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02664:Dicer1
|
APN |
12 |
104,705,129 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02667:Dicer1
|
APN |
12 |
104,714,906 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03353:Dicer1
|
APN |
12 |
104,713,107 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03377:Dicer1
|
APN |
12 |
104,712,197 (GRCm38) |
missense |
probably damaging |
0.98 |
|
everest
|
UTSW |
12 |
104,705,128 (GRCm38) |
missense |
probably damaging |
1.00 |
|
PIT4480001:Dicer1
|
UTSW |
12 |
104,696,544 (GRCm38) |
missense |
probably benign |
|
|
R0032:Dicer1
|
UTSW |
12 |
104,704,798 (GRCm38) |
nonsense |
probably null |
|
|
R0032:Dicer1
|
UTSW |
12 |
104,704,798 (GRCm38) |
nonsense |
probably null |
|
|
R0219:Dicer1
|
UTSW |
12 |
104,692,125 (GRCm38) |
critical splice donor site |
probably null |
|
|
R0242:Dicer1
|
UTSW |
12 |
104,702,451 (GRCm38) |
missense |
probably benign |
0.02 |
|
R0242:Dicer1
|
UTSW |
12 |
104,702,451 (GRCm38) |
missense |
probably benign |
0.02 |
|
R0385:Dicer1
|
UTSW |
12 |
104,704,174 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0402:Dicer1
|
UTSW |
12 |
104,731,064 (GRCm38) |
missense |
probably benign |
0.04 |
|
R0426:Dicer1
|
UTSW |
12 |
104,702,542 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0453:Dicer1
|
UTSW |
12 |
104,702,630 (GRCm38) |
missense |
probably benign |
|
|
R0502:Dicer1
|
UTSW |
12 |
104,705,060 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0507:Dicer1
|
UTSW |
12 |
104,691,658 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0511:Dicer1
|
UTSW |
12 |
104,702,841 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R0523:Dicer1
|
UTSW |
12 |
104,702,491 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0559:Dicer1
|
UTSW |
12 |
104,706,301 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0600:Dicer1
|
UTSW |
12 |
104,706,864 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1225:Dicer1
|
UTSW |
12 |
104,691,607 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R1351:Dicer1
|
UTSW |
12 |
104,729,142 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R1449:Dicer1
|
UTSW |
12 |
104,729,243 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
R1575:Dicer1
|
UTSW |
12 |
104,721,969 (GRCm38) |
critical splice donor site |
probably null |
|
|
R1642:Dicer1
|
UTSW |
12 |
104,713,156 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1651:Dicer1
|
UTSW |
12 |
104,708,805 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1658:Dicer1
|
UTSW |
12 |
104,700,414 (GRCm38) |
missense |
probably benign |
|
|
R1815:Dicer1
|
UTSW |
12 |
104,722,151 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1816:Dicer1
|
UTSW |
12 |
104,722,151 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1927:Dicer1
|
UTSW |
12 |
104,702,884 (GRCm38) |
missense |
possibly damaging |
0.91 |
|
R2113:Dicer1
|
UTSW |
12 |
104,713,214 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2129:Dicer1
|
UTSW |
12 |
104,722,031 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2157:Dicer1
|
UTSW |
12 |
104,702,949 (GRCm38) |
missense |
probably benign |
0.17 |
|
R2202:Dicer1
|
UTSW |
12 |
104,731,038 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R2203:Dicer1
|
UTSW |
12 |
104,731,038 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R2243:Dicer1
|
UTSW |
12 |
104,730,188 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R4237:Dicer1
|
UTSW |
12 |
104,729,228 (GRCm38) |
missense |
possibly damaging |
0.48 |
|
R4419:Dicer1
|
UTSW |
12 |
104,705,114 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4482:Dicer1
|
UTSW |
12 |
104,706,277 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4564:Dicer1
|
UTSW |
12 |
104,704,751 (GRCm38) |
nonsense |
probably null |
|
|
R4776:Dicer1
|
UTSW |
12 |
104,692,446 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R4834:Dicer1
|
UTSW |
12 |
104,696,591 (GRCm38) |
missense |
probably benign |
0.44 |
|
R4904:Dicer1
|
UTSW |
12 |
104,713,066 (GRCm38) |
missense |
probably benign |
|
|
R5202:Dicer1
|
UTSW |
12 |
104,694,731 (GRCm38) |
nonsense |
probably null |
|
|
R5272:Dicer1
|
UTSW |
12 |
104,704,240 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5363:Dicer1
|
UTSW |
12 |
104,703,151 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5717:Dicer1
|
UTSW |
12 |
104,705,128 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6381:Dicer1
|
UTSW |
12 |
104,696,462 (GRCm38) |
missense |
probably benign |
0.00 |
|
R6479:Dicer1
|
UTSW |
12 |
104,696,723 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R6956:Dicer1
|
UTSW |
12 |
104,731,023 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7234:Dicer1
|
UTSW |
12 |
104,708,849 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7401:Dicer1
|
UTSW |
12 |
104,712,278 (GRCm38) |
missense |
probably benign |
|
|
R7407:Dicer1
|
UTSW |
12 |
104,722,351 (GRCm38) |
nonsense |
probably null |
|
|
R7471:Dicer1
|
UTSW |
12 |
104,694,710 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7699:Dicer1
|
UTSW |
12 |
104,705,170 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7768:Dicer1
|
UTSW |
12 |
104,706,697 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R7831:Dicer1
|
UTSW |
12 |
104,708,800 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7998:Dicer1
|
UTSW |
12 |
104,704,069 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8010:Dicer1
|
UTSW |
12 |
104,692,132 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R8061:Dicer1
|
UTSW |
12 |
104,702,818 (GRCm38) |
nonsense |
probably null |
|
|
R8213:Dicer1
|
UTSW |
12 |
104,702,693 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8261:Dicer1
|
UTSW |
12 |
104,691,606 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8419:Dicer1
|
UTSW |
12 |
104,702,677 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8708:Dicer1
|
UTSW |
12 |
104,728,445 (GRCm38) |
missense |
possibly damaging |
0.65 |
|
R8851:Dicer1
|
UTSW |
12 |
104,724,041 (GRCm38) |
missense |
possibly damaging |
0.76 |
|
R9220:Dicer1
|
UTSW |
12 |
104,713,156 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9371:Dicer1
|
UTSW |
12 |
104,704,732 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9387:Dicer1
|
UTSW |
12 |
104,729,240 (GRCm38) |
missense |
possibly damaging |
0.48 |
|
R9505:Dicer1
|
UTSW |
12 |
104,731,038 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R9636:Dicer1
|
UTSW |
12 |
104,722,147 (GRCm38) |
nonsense |
probably null |
|
|
R9682:Dicer1
|
UTSW |
12 |
104,706,225 (GRCm38) |
missense |
probably damaging |
1.00 |
|
X0018:Dicer1
|
UTSW |
12 |
104,696,934 (GRCm38) |
missense |
probably benign |
0.00 |
|
Z1176:Dicer1
|
UTSW |
12 |
104,731,020 (GRCm38) |
missense |
probably null |
0.97 |
|
| Predicted Primers |
PCR Primer
(F):5'- TCGATGGATATGGTGACCTCTCCAG -3'
(R):5'- AGACTCGATGCTGAGTGCCTTCTG -3'
Sequencing Primer
(F):5'- TGACCTCTCCAGAGCGTG -3'
(R):5'- TTCTTGCCAGCATCTAGAACAAAG -3'
|
| Posted On |
2013-07-30 |
Incidental Mutation