Incidental Mutation 'R8132:Rpa3'
ID 632066
Institutional Source Beutler Lab
Gene Symbol Rpa3
Ensembl Gene ENSMUSG00000012483
Gene Name replication protein A3
Synonyms C330026P08Rik, 14kDa
MMRRC Submission 067895-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.852) question?
Stock # R8132 (G1)
Quality Score 225.009
Status Not validated
Chromosome 6
Chromosomal Location 8255936-8259141 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to C at 8256790 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Serine at position 63 (I63S)
Ref Sequence ENSEMBL: ENSMUSP00000012627 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000012627] [ENSMUST00000159335] [ENSMUST00000159378] [ENSMUST00000159433] [ENSMUST00000160705] [ENSMUST00000162034] [ENSMUST00000162564]
AlphaFold Q9CQ71
Predicted Effect probably damaging
Transcript: ENSMUST00000012627
AA Change: I63S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000012627
Gene: ENSMUSG00000012483
AA Change: I63S

DomainStartEndE-ValueType
Pfam:Rep_fac-A_3 5 113 2.5e-36 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000159335
Predicted Effect probably benign
Transcript: ENSMUST00000159378
Predicted Effect probably benign
Transcript: ENSMUST00000159433
Predicted Effect probably benign
Transcript: ENSMUST00000160705
Predicted Effect probably benign
Transcript: ENSMUST00000162034
SMART Domains Protein: ENSMUSP00000124306
Gene: ENSMUSG00000089862

DomainStartEndE-ValueType
low complexity region 40 51 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000162564
Coding Region Coverage
  • 1x: 99.8%
  • 3x: 99.6%
  • 10x: 98.6%
  • 20x: 94.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 50 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb10 C T 8: 124,691,757 (GRCm39) A403T Het
Abhd16b G A 2: 181,135,760 (GRCm39) A221T probably damaging Het
Arhgef1 C T 7: 24,607,087 (GRCm39) probably benign Het
Arhgef1 C T 7: 24,619,174 (GRCm39) Q472* probably null Het
Calr3 C T 8: 73,181,023 (GRCm39) G298S probably damaging Het
Chrng A G 1: 87,133,718 (GRCm39) T15A unknown Het
CK137956 T A 4: 127,845,075 (GRCm39) K223* probably null Het
Clca3b A T 3: 144,552,935 (GRCm39) S97T probably benign Het
Cops7b G T 1: 86,514,916 (GRCm39) G102V probably damaging Het
Dennd1a T A 2: 37,748,072 (GRCm39) S382C probably damaging Het
Fdps G A 3: 89,006,693 (GRCm39) Q66* probably null Het
Gemin4 T C 11: 76,103,739 (GRCm39) T341A probably benign Het
Grk3 A G 5: 113,109,355 (GRCm39) S201P unknown Het
Hgf C T 5: 16,807,329 (GRCm39) T407I probably damaging Het
Hip1r C T 5: 124,135,290 (GRCm39) R446C probably damaging Het
Hyal6 A T 6: 24,740,827 (GRCm39) I327L possibly damaging Het
Ifna15 T C 4: 88,475,920 (GRCm39) E188G possibly damaging Het
Igip A G 18: 36,434,266 (GRCm39) S11G probably benign Het
Igkv5-39 A G 6: 69,877,589 (GRCm39) Y56H probably damaging Het
Jph1 G A 1: 17,086,379 (GRCm39) T381I probably damaging Het
Lrrc55 T C 2: 85,022,259 (GRCm39) I311V probably benign Het
Mrps35 T A 6: 146,949,661 (GRCm39) D58E probably benign Het
Ms4a4d C A 19: 11,535,310 (GRCm39) P203T probably benign Het
Naip1 T G 13: 100,573,883 (GRCm39) E225D possibly damaging Het
Ncapg2 T A 12: 116,407,967 (GRCm39) I989N possibly damaging Het
Nek3 A T 8: 22,647,036 (GRCm39) Y166* probably null Het
Nphs1 A G 7: 30,181,478 (GRCm39) E1169G probably benign Het
Nudt15 G A 14: 73,759,099 (GRCm39) P123L probably benign Het
Or10c1 T A 17: 37,522,207 (GRCm39) E179V probably damaging Het
Or10q1b G A 19: 13,682,584 (GRCm39) C131Y probably damaging Het
Or5ac22 T C 16: 59,134,907 (GRCm39) I288V possibly damaging Het
Or6k14 T A 1: 173,927,737 (GRCm39) S238T probably damaging Het
Or8a1b C T 9: 37,623,369 (GRCm39) V69M probably benign Het
Pcdha5 T C 18: 37,093,694 (GRCm39) S68P possibly damaging Het
Plec G T 15: 76,074,773 (GRCm39) A330E unknown Het
Rsf1 CG CGACGGCGGGG 7: 97,229,115 (GRCm39) probably benign Het
Snap25 A T 2: 136,611,748 (GRCm39) K83N probably benign Het
Sos1 T G 17: 80,716,031 (GRCm39) Q977P probably damaging Het
Spag16 A G 1: 70,420,461 (GRCm39) Y483C probably damaging Het
Speg A G 1: 75,399,639 (GRCm39) E2362G probably damaging Het
Swap70 A G 7: 109,855,084 (GRCm39) D128G probably damaging Het
Syngap1 G A 17: 27,177,154 (GRCm39) M545I probably damaging Het
Tdpoz6 G A 3: 93,599,452 (GRCm39) Q306* probably null Het
Tmem147 T C 7: 30,427,872 (GRCm39) E110G probably damaging Het
Tmem156 T A 5: 65,233,098 (GRCm39) I155F probably benign Het
Trim25 C A 11: 88,907,432 (GRCm39) A597E probably damaging Het
Ttc7b T C 12: 100,413,131 (GRCm39) Y229C probably damaging Het
Utrn T A 10: 12,558,154 (GRCm39) Q1435L probably damaging Het
Zbtb41 T C 1: 139,350,955 (GRCm39) S23P probably benign Het
Zeb2 T A 2: 44,879,142 (GRCm39) I1075F probably damaging Het
Other mutations in Rpa3
AlleleSourceChrCoordTypePredicted EffectPPH Score
R1419:Rpa3 UTSW 6 8,257,720 (GRCm39) missense probably benign 0.05
R5592:Rpa3 UTSW 6 8,257,694 (GRCm39) missense probably benign 0.30
R6297:Rpa3 UTSW 6 8,256,767 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TGCTGGGGTCATACTTTCAG -3'
(R):5'- GGAACTCTGAACATCCTCGG -3'

Sequencing Primer
(F):5'- AGTGTTACTATACTGTTCTAGTGTCC -3'
(R):5'- CAGGCCAGCATTTTTGACAACTG -3'
Posted On 2020-06-30